Guide to the Human Genome
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Name: TMEM54 Sequence: fasta or formatted (222aa) NCBI GI: 15723380
Description:

transmembrane protein 54

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         22           2
 C cysteine            4.5         10           1
 D aspartate           2.3          5           1
 E glutamate           3.2          7           1
 F phenylalanine       3.6          8           1
 G glycine             6.3         14           2
 H histidine           2.3          5           2
 I isoleucine          4.1          9           1
 K lysine              1.8          4           1
 L leucine            17.1         38           2
 M methionine          2.3          5           2
 N asparagine          1.4          3           1
 P proline             4.1          9           1
 Q glutamine           2.3          5           1
 R arginine            4.5         10           1
 S serine              9.9         22           3
 T threonine           7.2         16           1
 V valine              9.9         22           2
 W tryptophan          1.8          4           2
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 54 
KRTCAP3               0.248   keratinocyte associated protein 3 
OR5V1                 0.019   olfactory receptor, family 5, subfamily V, member 1 ...
SFT2D2                0.017   SFT2 domain containing 2 
OR6M1                 0.012   olfactory receptor, family 6, subfamily M, member 1 ...
SLC29A3               0.007   solute carrier family 29 (nucleoside transporters),...
GPR137C               0.007   G protein-coupled receptor 137C 
SBK2                  0.007   SH3-binding domain kinase family, member 2 
HSD11B1               0.007   11-beta-hydroxysteroid dehydrogenase 1 
HSD11B1               0.007   11-beta-hydroxysteroid dehydrogenase 1 
LOC100130667          0.007   PREDICTED: hypothetical protein 
LOC100130667          0.007   PREDICTED: hypothetical protein 
LOC100130667          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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