Search of human proteins with 27477081

Search of human proteins with 27477081

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27477081 interleukin 25 isoform 2 [Homo sapiens]
         (161 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27477081 interleukin 25 isoform 2 [Homo sapiens]                   355   1e-98
gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]         350   3e-97
gi|7019435 interleukin 17C [Homo sapiens]                              64   7e-11
gi|7657228 interleukin 17B precursor [Homo sapiens]                    51   5e-07
gi|19923715 interleukin 17D precursor [Homo sapiens]                   47   7e-06
gi|16418375 interleukin 17F precursor [Homo sapiens]                   44   8e-05
gi|4504651 interleukin 17A precursor [Homo sapiens]                    38   0.003
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]           31   0.53 
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]           31   0.53 
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]           31   0.53 
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]         30   1.2  
gi|16306552 semaphorin Y [Homo sapiens]                                29   1.5  
gi|33359221 dyslexia susceptibility 2-like [Homo sapiens]              29   2.0  
gi|239753036 PREDICTED: hypothetical protein [Homo sapiens]            28   2.6  
gi|239747603 PREDICTED: hypothetical protein [Homo sapiens]            28   2.6  
gi|239741468 PREDICTED: hypothetical protein isoform 1 [Homo sap...    28   2.6  
gi|239740972 PREDICTED: hypothetical protein [Homo sapiens]            28   2.6  
gi|45545421 ectonucleotide pyrophosphatase/phosphodiesterase 7 [...    28   2.6  
gi|194097442 protein tyrosine phosphatase, receptor type, N poly...    28   3.4  
gi|194097440 protein tyrosine phosphatase, receptor type, N poly...    28   3.4  
gi|194097438 protein tyrosine phosphatase, receptor type, N poly...    28   3.4  
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]            28   3.4  
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ...    28   3.4  
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ...    28   4.5  
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ...    28   4.5  
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ...    28   4.5  
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]    28   4.5  
gi|18087845 cell division cycle associated 5 [Homo sapiens]            27   5.8  
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    27   7.6  
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    27   7.6  

>gi|27477081 interleukin 25 isoform 2 [Homo sapiens]
          Length = 161

 Score =  355 bits (910), Expect = 1e-98
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MYQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRA 60
           MYQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRA
Sbjct: 1   MYQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRA 60

Query: 61  SEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHN 120
           SEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHN
Sbjct: 61  SEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHN 120

Query: 121 QTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG 161
           QTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG
Sbjct: 121 QTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG 161


>gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]
          Length = 177

 Score =  350 bits (898), Expect = 3e-97
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 3   QVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASE 62
           QVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASE
Sbjct: 19  QVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASE 78

Query: 63  DGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQT 122
           DGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQT
Sbjct: 79  DGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQT 138

Query: 123 VFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG 161
           VFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG
Sbjct: 139 VFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG 177


>gi|7019435 interleukin 17C [Homo sapiens]
          Length = 197

 Score = 63.5 bits (153), Expect = 7e-11
 Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 67  NSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYR 126
           + R+ISPWRY +D D +R PQ L  A CLC  C+  +TG       NS  L  +  V  R
Sbjct: 102 HQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAAL-NSVRLLQSLLVLRR 160

Query: 127 RPCHGEKG---THKGYCLERRLYRVSLACVCVRPR 158
           RPC  +     T   +        V + C CV PR
Sbjct: 161 RPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCVLPR 195


>gi|7657228 interleukin 17B precursor [Homo sapiens]
          Length = 180

 Score = 50.8 bits (120), Expect = 5e-07
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 67  NSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYR 126
           N R++SPW Y ++ D +R+P DL  ARCLC  CV+  T    + R    +   +Q    R
Sbjct: 94  NKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFT--MQEDRSMVSVPVFSQVPVRR 151

Query: 127 RPCHGEKGTHKGYCLERRLYR-VSLACVCV 155
           R C     T  G C +R +   +++ C C+
Sbjct: 152 RLCPPPPRT--GPCRQRAVMETIAVGCTCI 179


>gi|19923715 interleukin 17D precursor [Homo sapiens]
          Length = 202

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 40  TVPVPPLEPARPNRHPESCRASEDG---PLNSRAISPWRYELDRDLNRLPQDLYHARCLC 96
           T+ + P E AR    P   R ++     P N R++SPW Y +  D  R P+ L  A CLC
Sbjct: 57  TLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLC 116

Query: 97  PHCVSLQTGSHMDPRGNSELLYHNQTVFYRRP-CHGEKGTHKGYCLERRLYRVSLACVCV 155
             C++   G   D R  S  +Y    V  R P C G +  +           + + C CV
Sbjct: 117 RGCLTGLFGEE-DVRFRSAPVYMPTVVLRRTPACAGGRSVY-----TEAYVTIPVGCTCV 170


>gi|16418375 interleukin 17F precursor [Homo sapiens]
          Length = 163

 Score = 43.5 bits (101), Expect = 8e-05
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 8/102 (7%)

Query: 56  ESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSE 115
           E+ R S    + SR+ SPW Y +  D NR P ++  A+C    C++ Q     D   NS 
Sbjct: 64  ENQRVSMSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQ--GKEDISMNSV 121

Query: 116 LLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRP 157
            +     V  R+     +G    + LE+ L  V++ C CV P
Sbjct: 122 PIQQETLVVRRK----HQGCSVSFQLEKVL--VTVGCTCVTP 157


>gi|4504651 interleukin 17A precursor [Homo sapiens]
          Length = 155

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 68  SRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYRR 127
           +R+ SPW    + D  R P  ++ A+  C H   +    ++D   NS  +     V  R 
Sbjct: 68  NRSTSPWNLHRNEDPERYPSVIWEAK--CRHLGCINADGNVDYHMNSVPIQQEILVLRRE 125

Query: 128 PCHGEKGTHKGYCLERRLYRVSLACVCVRPRV 159
           P H        + LE+ L  VS+ C CV P V
Sbjct: 126 PPH----CPNSFRLEKIL--VSVGCTCVTPIV 151


>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.8 bits (68), Expect = 0.53
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 21  PSCCPSKGQDTSEELLRWSTVPVPPLE-----PARPNRHPESCR 59
           P C P+     ++ L R    P+PP E       RP +HPE  R
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259


>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.8 bits (68), Expect = 0.53
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 21  PSCCPSKGQDTSEELLRWSTVPVPPLE-----PARPNRHPESCR 59
           P C P+     ++ L R    P+PP E       RP +HPE  R
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259


>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.8 bits (68), Expect = 0.53
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 21  PSCCPSKGQDTSEELLRWSTVPVPPLE-----PARPNRHPESCR 59
           P C P+     ++ L R    P+PP E       RP +HPE  R
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259


>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
          Length = 1445

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 24   CPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP 65
            CP K +   +    W+  P  P+ PA P+ H     ++  GP
Sbjct: 1388 CPVKNRGIRDRDSSWAPPPREPVSPAGPHHHRPRMASTSGGP 1429


>gi|16306552 semaphorin Y [Homo sapiens]
          Length = 930

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 13/55 (23%)

Query: 21  PSCCPSKGQD--TSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISP 73
           P  CP +  +  T EELLR+   P PP + A P             PL SRA+ P
Sbjct: 754 PPGCPGQAVEVTTLEELLRYLHGPQPPRKGAEP-----------PAPLTSRALPP 797


>gi|33359221 dyslexia susceptibility 2-like [Homo sapiens]
          Length = 1049

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 18  SHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYE 77
           S W +CC    QD++  +  W        + +RP    +SCRA      NS  +   +++
Sbjct: 84  SCWAACC----QDSACHVFWWLEGMCIQADCSRP----QSCRAFRTHSSNSMLVFLKKFQ 135

Query: 78  LDRDLNRLPQD 88
              DL  LP+D
Sbjct: 136 TADDLGFLPED 146


>gi|239753036 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 352

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 15  HTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP-LNSRAISP 73
           H    WPS CP+ G     +     T+    L P   NR     R +  GP L S+ + P
Sbjct: 256 HNSLFWPSSCPAHGGQCRPKTSSSQTLQAHLLLPGGMNRPSFDLRTASAGPALASQGLFP 315


>gi|239747603 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 352

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 15  HTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP-LNSRAISP 73
           H    WPS CP+ G     +     T+    L P   NR     R +  GP L S+ + P
Sbjct: 256 HNSLFWPSSCPAHGGQCRPKTSSSQTLQAHLLLPGGMNRPSFDLRTASAGPALASQGLFP 315


>gi|239741468 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 352

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 15  HTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP-LNSRAISP 73
           H    WPS CP+ G     +     T+    L P   NR     R +  GP L S+ + P
Sbjct: 256 HNSLFWPSSCPAHGGQCRPKTSSSQTLQAHLLLPGGMNRPSFDLRTASAGPALASQGLFP 315


>gi|239740972 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 389

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 15  HTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP-LNSRAISP 73
           H    WPS CP+ G     +     T+    L P   NR     R +  GP L S+ + P
Sbjct: 293 HNSLFWPSSCPANGGQCRPKTSSSQTLQAHLLLPGGINRPSFDLRTASAGPALASQGLFP 352


>gi|45545421 ectonucleotide pyrophosphatase/phosphodiesterase 7
           [Homo sapiens]
          Length = 458

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 74  WRYELDRD---LNRLPQDLYHARCLCPHCVS--------LQTGSHMDPRGNSELLYHNQT 122
           W Y+ D D   L+ + +D   AR + P  V+        L TG +++  G    +Y+N T
Sbjct: 43  WNYDQDVDTPNLDAMARDGVKARYMTPAFVTMTSPCHFTLVTGKYIENHGVVHNMYYNTT 102

Query: 123 VFYRRPCHGEKGTHK 137
              + P H   G  +
Sbjct: 103 SKVKLPYHATLGIQR 117


>gi|194097442 protein tyrosine phosphatase, receptor type, N
           polypeptide 2 isoform 3 precursor [Homo sapiens]
          Length = 986

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 21  PSCCPSKGQDTSEELLRW-STVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELD 79
           P   P +G    + LLR  S +P P L PA P + P     SED   +S       + L 
Sbjct: 254 PPAPPGEGSLEPQYLLRAPSRMPRPLLAPAAPQKWPSPLGDSEDP--SSTGDGARIHTLL 311

Query: 80  RDLNRLPQDL 89
           +DL R P ++
Sbjct: 312 KDLQRQPAEV 321


>gi|194097440 protein tyrosine phosphatase, receptor type, N
           polypeptide 2 isoform 1 precursor [Homo sapiens]
          Length = 1015

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 21  PSCCPSKGQDTSEELLRW-STVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELD 79
           P   P +G    + LLR  S +P P L PA P + P     SED   +S       + L 
Sbjct: 254 PPAPPGEGSLEPQYLLRAPSRMPRPLLAPAAPQKWPSPLGDSEDP--SSTGDGARIHTLL 311

Query: 80  RDLNRLPQDL 89
           +DL R P ++
Sbjct: 312 KDLQRQPAEV 321


>gi|194097438 protein tyrosine phosphatase, receptor type, N
           polypeptide 2 isoform 2 precursor [Homo sapiens]
          Length = 998

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 21  PSCCPSKGQDTSEELLRW-STVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELD 79
           P   P +G    + LLR  S +P P L PA P + P     SED   +S       + L 
Sbjct: 237 PPAPPGEGSLEPQYLLRAPSRMPRPLLAPAAPQKWPSPLGDSEDP--SSTGDGARIHTLL 294

Query: 80  RDLNRLPQDL 89
           +DL R P ++
Sbjct: 295 KDLQRQPAEV 304


>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 15/46 (32%), Positives = 17/46 (36%)

Query: 25  PSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRA 70
           P +     E    W+  P  P   A P R   SC A E G   S A
Sbjct: 152 PGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGA 197


>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
           sapiens]
          Length = 303

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 15/46 (32%), Positives = 17/46 (36%)

Query: 25  PSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRA 70
           P +     E    W+  P  P   A P R   SC A E G   S A
Sbjct: 152 PGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGA 197


>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 23  CCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWR 75
           C     Q    ELL W     PP  P RP+  P   R    GP +    SPWR
Sbjct: 122 CGLRTAQPAGFELLAWQHPQKPPGGPQRPS--PGGLR----GPRSLSGSSPWR 168


>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 23  CCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWR 75
           C     Q    ELL W     PP  P RP+  P   R    GP +    SPWR
Sbjct: 122 CGLRTAQPAGFELLAWQHPQKPPGGPQRPS--PGGLR----GPRSLSGSSPWR 168


>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 23  CCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWR 75
           C     Q    ELL W     PP  P RP+  P   R    GP +    SPWR
Sbjct: 122 CGLRTAQPAGFELLAWQHPQKPPGGPQRPS--PGGLR----GPRSLSGSSPWR 168


>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
          Length = 1603

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 14  THTYSHWPSCCPSKGQDTSEE-LLRWSTVPVPP--LEPARPNRHP-------ESCRASED 63
           TH +S  P   P +   T    +L     P+PP    P    R P        S R  ++
Sbjct: 54  THAFSENPRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPVGDGSSSRRCWDN 113

Query: 64  GPLNSRAISPWRYELDRDLNRLPQDLYHA 92
           G +N R +     ++ +DL RL QDL H+
Sbjct: 114 GRVNLRPVVQL-IDIMKDLTRLSQDLQHS 141


>gi|18087845 cell division cycle associated 5 [Homo sapiens]
          Length = 252

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 31  TSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSR 69
           T E+L +  +VP  P     PN  PE+  +S++G L++R
Sbjct: 98  TKEDLFKTHSVPATPTSTPVPN--PEAESSSKEGELDAR 134


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 42   PVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHAR 93
            P+P L   +  RH E  +A  D   N    S    E+   LN L QD+ H +
Sbjct: 1557 PLPILSSKKTRRHTEGMQADADD--NILDYSDGMEEIFGSLNSLKQDIEHMK 1606


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 42   PVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHAR 93
            P+P L   +  RH E  +A  D   N    S    E+   LN L QD+ H +
Sbjct: 1506 PLPILSSKKTRRHTEGMQADADD--NILDYSDGMEEIFGSLNSLKQDIEHMK 1555


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,524,301
Number of Sequences: 37866
Number of extensions: 371276
Number of successful extensions: 1105
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 45
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.