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Search of human proteins with 27477070
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
(1849 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 3669 0.0
gi|4557565 excision repair cross-complementing rodent repair def... 295 4e-79
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 259 2e-68
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 259 2e-68
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 253 1e-66
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 250 8e-66
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 248 3e-65
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 248 3e-65
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 248 3e-65
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 248 3e-65
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 248 4e-65
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 248 4e-65
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 248 5e-65
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 248 5e-65
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 248 5e-65
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 248 5e-65
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 247 7e-65
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 247 9e-65
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 246 1e-64
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 241 4e-63
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 236 2e-61
gi|216548193 RAD54-like protein [Homo sapiens] 234 6e-61
gi|216548186 RAD54-like protein [Homo sapiens] 234 6e-61
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 229 2e-59
gi|6912622 RAD54 homolog B [Homo sapiens] 228 3e-59
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 222 3e-57
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 221 4e-57
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 216 2e-55
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 211 4e-54
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 208 4e-53
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 3669 bits (9514), Expect = 0.0
Identities = 1849/1849 (100%), Positives = 1849/1849 (100%)
Query: 1 MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRI 60
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRI
Sbjct: 1 MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRI 60
Query: 61 AAGQAVEAIVKNVPEWNPVPRTRQEPTSESSMEDSPTTERLNFDRFDICRLLQHGASLLG 120
AAGQAVEAIVKNVPEWNPVPRTRQEPTSESSMEDSPTTERLNFDRFDICRLLQHGASLLG
Sbjct: 61 AAGQAVEAIVKNVPEWNPVPRTRQEPTSESSMEDSPTTERLNFDRFDICRLLQHGASLLG 120
Query: 121 SAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPTS 180
SAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPTS
Sbjct: 121 SAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPTS 180
Query: 181 ASFVNKQPTLQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDG 240
ASFVNKQPTLQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDG
Sbjct: 181 ASFVNKQPTLQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDG 240
Query: 241 EPEEKRRKIANVVINQSANDSKVLIDNIPDSSSLIEETNEWPLESFCEELCNDLFNPSWE 300
EPEEKRRKIANVVINQSANDSKVLIDNIPDSSSLIEETNEWPLESFCEELCNDLFNPSWE
Sbjct: 241 EPEEKRRKIANVVINQSANDSKVLIDNIPDSSSLIEETNEWPLESFCEELCNDLFNPSWE 300
Query: 301 VRHGAGTGLREILKAHGKSGGKMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVS 360
VRHGAGTGLREILKAHGKSGGKMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVS
Sbjct: 301 VRHGAGTGLREILKAHGKSGGKMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVS 360
Query: 361 DEVVAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVR 420
DEVVAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVR
Sbjct: 361 DEVVAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVR 420
Query: 421 QDVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPFIINTLWDAL 480
QDVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPFIINTLWDAL
Sbjct: 421 QDVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPFIINTLWDAL 480
Query: 481 LELDDLTASTNSIMTLLSSLLTYPQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALET 540
LELDDLTASTNSIMTLLSSLLTYPQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALET
Sbjct: 481 LELDDLTASTNSIMTLLSSLLTYPQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALET 540
Query: 541 LFTLLSTQDQNSSSWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVV 600
LFTLLSTQDQNSSSWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVV
Sbjct: 541 LFTLLSTQDQNSSSWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVV 600
Query: 601 AAACPWMGAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQSQNKEVLQEYIAGA 660
AAACPWMGAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQSQNKEVLQEYIAGA
Sbjct: 601 AAACPWMGAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQSQNKEVLQEYIAGA 660
Query: 661 DTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNS 720
DTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNS
Sbjct: 661 DTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNS 720
Query: 721 KSALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQ 780
KSALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQ
Sbjct: 721 KSALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQ 780
Query: 781 LISSLADVHIEVGNRVNNNVLTIDQASDLVTTVFNEATSSFDLNPQVLQQLDSKRQQVQM 840
LISSLADVHIEVGNRVNNNVLTIDQASDLVTTVFNEATSSFDLNPQVLQQLDSKRQQVQM
Sbjct: 781 LISSLADVHIEVGNRVNNNVLTIDQASDLVTTVFNEATSSFDLNPQVLQQLDSKRQQVQM 840
Query: 841 TVTETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQC 900
TVTETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQC
Sbjct: 841 TVTETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQC 900
Query: 901 IAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSTSEKDGM 960
IAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSTSEKDGM
Sbjct: 901 IAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSTSEKDGM 960
Query: 961 HHTVTKHRGIITLYRHQKAAFAITSRRGPTPKAVKAQIADLPAGSSGNILVELDEAQKPY 1020
HHTVTKHRGIITLYRHQKAAFAITSRRGPTPKAVKAQIADLPAGSSGNILVELDEAQKPY
Sbjct: 961 HHTVTKHRGIITLYRHQKAAFAITSRRGPTPKAVKAQIADLPAGSSGNILVELDEAQKPY 1020
Query: 1021 LVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQ 1080
LVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQ
Sbjct: 1021 LVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQ 1080
Query: 1081 ELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATME 1140
ELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATME
Sbjct: 1081 ELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATME 1140
Query: 1141 TMNIFLEKVLPWLGAIDDSVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTD 1200
TMNIFLEKVLPWLGAIDDSVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTD
Sbjct: 1141 TMNIFLEKVLPWLGAIDDSVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTD 1200
Query: 1201 SVRFMATQCFATLIRLMPLEAGIPDPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPV 1260
SVRFMATQCFATLIRLMPLEAGIPDPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPV
Sbjct: 1201 SVRFMATQCFATLIRLMPLEAGIPDPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPV 1260
Query: 1261 PINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSK 1320
PINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSK
Sbjct: 1261 PINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSK 1320
Query: 1321 LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIV 1380
LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIV
Sbjct: 1321 LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIV 1380
Query: 1381 ASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNV 1440
ASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNV
Sbjct: 1381 ASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNV 1440
Query: 1441 LELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFL 1500
LELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFL
Sbjct: 1441 LELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFL 1500
Query: 1501 LRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKP 1560
LRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKP
Sbjct: 1501 LRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKP 1560
Query: 1561 KLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALK 1620
KLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALK
Sbjct: 1561 KLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALK 1620
Query: 1621 QLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGS 1680
QLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGS
Sbjct: 1621 QLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGS 1680
Query: 1681 IPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1740
IPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA
Sbjct: 1681 IPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1740
Query: 1741 HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1800
HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL
Sbjct: 1741 HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1800
Query: 1801 DKDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK 1849
DKDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK
Sbjct: 1801 DKDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK 1849
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 295 bits (754), Expect = 4e-79
Identities = 199/564 (35%), Positives = 290/564 (51%), Gaps = 44/564 (7%)
Query: 1254 ENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRA 1313
E +K+P + +L KYQQ GV WL L+ + GIL D+MGLGKT+Q I LAG +
Sbjct: 495 EGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKI 554
Query: 1314 QEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIR--LQH 1371
+ + E + P+++VCP T+ WV E + + LH TG T + ++
Sbjct: 555 RTRGSNYRFEGLG-PTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRD 613
Query: 1372 QVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIIL 1431
H +++ SY +R D ++Y ILDEGH I+N ++ A KQ +RIIL
Sbjct: 614 VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 673
Query: 1432 SGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDA 1491
SG+P+QNN+ ELWSLFDF+ PG LGT F ++ PI + +S + +
Sbjct: 674 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 733
Query: 1492 LHRQVLPFLLRRMKEDVLQ--DLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS 1549
L + P+LLRRMK DV LP K Q +C L+ Q ++Y++F S+ +
Sbjct: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRI----- 788
Query: 1550 SATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKL-AVQNSSLH 1608
L +F L LRK+CNHP L F + L + + L
Sbjct: 789 ------------LNGEMQIFSGLIALRKICNHPDL--------FSGGPKNLKGLPDDELE 828
Query: 1609 DIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPH 1668
+ Q + K ++++ L R+L+F Q + MLDI+E L
Sbjct: 829 EDQFGYWKRSGKMIVVESLLKIWHKQ---------GQRVLLFSQSRQMLDILEVFL---R 876
Query: 1669 LPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDW 1728
TYL++DG+ R +++R+N D SI V LLTT VGGLG+NLTGA+ VV + DW
Sbjct: 877 AQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDW 936
Query: 1729 NPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQS 1788
NP D QA +RA RIGQK+ V VYRL+T GT+EEKI Q FK + N V+ ++ +
Sbjct: 937 NPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVL-KDPKQRRF 995
Query: 1789 MGTDQLLDLFTLDKDGKAEKADTS 1812
++ L +LFTL ++ +TS
Sbjct: 996 FKSNDLYELFTLTSPDASQSTETS 1019
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 259 bits (662), Expect = 2e-68
Identities = 178/527 (33%), Positives = 269/527 (51%), Gaps = 56/527 (10%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
IN L+ YQ G+ W+ L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 771
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R L Q++ + N++
Sbjct: 772 ---LNGPYLIIVPLSTLSNWTYEFDKWAPS--VVKISYKGTPAMRRSLVPQLRSGKFNVL 826
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A RI+L+GTP+QN
Sbjct: 827 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 886
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P A R E+E +L + LH+ + P
Sbjct: 887 KLPELWALLNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRP 944
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 945 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQ-----------AKGILLTDGSE 993
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQ---HA 1613
K K G + + LRK+CNHP + QH E ++ AE L N ++ + +
Sbjct: 994 KDKKGKGGAKTLMNTIMQLRKICNHPYMF---QHIE-ESFAEHLGYSNGVINGAELYRAS 1049
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N HR+L+FCQ+ S++ I+E +
Sbjct: 1050 GKFELLDRILPKLRATN--------------HRVLLFCQMTSLMTIMEDYFA---FRNFL 1092
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R +++ +FN S + LL+T GGLGLNL ADTVV + DWNP +
Sbjct: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI 1779
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI
Sbjct: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1199
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 259 bits (662), Expect = 2e-68
Identities = 178/527 (33%), Positives = 269/527 (51%), Gaps = 56/527 (10%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
IN L+ YQ G+ W+ L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 771
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R L Q++ + N++
Sbjct: 772 ---LNGPYLIIVPLSTLSNWTYEFDKWAPS--VVKISYKGTPAMRRSLVPQLRSGKFNVL 826
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A RI+L+GTP+QN
Sbjct: 827 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 886
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P A R E+E +L + LH+ + P
Sbjct: 887 KLPELWALLNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRP 944
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 945 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQ-----------AKGILLTDGSE 993
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQ---HA 1613
K K G + + LRK+CNHP + QH E ++ AE L N ++ + +
Sbjct: 994 KDKKGKGGAKTLMNTIMQLRKICNHPYMF---QHIE-ESFAEHLGYSNGVINGAELYRAS 1049
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N HR+L+FCQ+ S++ I+E +
Sbjct: 1050 GKFELLDRILPKLRATN--------------HRVLLFCQMTSLMTIMEDYFA---FRNFL 1092
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R +++ +FN S + LL+T GGLGLNL ADTVV + DWNP +
Sbjct: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI 1779
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI
Sbjct: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1199
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 253 bits (646), Expect = 1e-66
Identities = 180/547 (32%), Positives = 273/547 (49%), Gaps = 75/547 (13%)
Query: 1245 EQLLDGKKLENYKIPVPINAE------LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKT 1298
E L + +K N I ++ LR YQ G+NWL L + ++GIL D+MGLGKT
Sbjct: 156 ELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKT 215
Query: 1299 LQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLH 1358
LQ+I +L +R +P P +V+ P + +W++E ++ L +
Sbjct: 216 LQTIALLGYLKHYRN-----------IPGPHMVLVPKSTLHNWMNEFKRWVPS--LRVIC 262
Query: 1359 YTGPPTER---IRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTK 1415
+ G R IR + ++ V SY++V + F+ + Y ++DE H IKN K+K
Sbjct: 263 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 322
Query: 1416 LSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDA 1475
LS+ V++ + R++L+GTP+QNN+ ELW+L +FL+P + F + + D
Sbjct: 323 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF--------DT 374
Query: 1476 RSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDF 1535
++ +Q+ ++ LH + PFLLRR+K DV + LPPK Y LS +Q + Y
Sbjct: 375 KNCLGDQKL----VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKI 430
Query: 1536 AKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKT 1595
D+D SS + + + L LRK CNHP L + T
Sbjct: 431 LMK----DIDVLNSSGKMDKM----------RLLNILMQLRKCCNHPYLFDGAEPGPPYT 476
Query: 1596 TAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKS 1655
T E H + ++ K+ L +LL E G+ R+LIF Q+
Sbjct: 477 TDE---------HIVSNSGKMVVLDKLL-------AKLKEQGS-------RVLIFSQMTR 513
Query: 1656 MLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSID-VLLLTTHVGGLGLN 1714
+LDI+E + Y RLDG P +R + FN S + +L+T GGLG+N
Sbjct: 514 LLDILEDYCM---WRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGIN 570
Query: 1715 LTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNI 1774
L AD V+ + DWNP DLQAMDRAHRIGQK+ V V+RLIT T+EE+I+ + K+ +
Sbjct: 571 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 630
Query: 1775 ANTVISQ 1781
+ VI Q
Sbjct: 631 DSIVIQQ 637
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 250 bits (639), Expect = 8e-66
Identities = 174/540 (32%), Positives = 270/540 (50%), Gaps = 72/540 (13%)
Query: 1265 ELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAEC 1324
+LR YQ G+NWL L + ++GIL D+MGLGKTLQ+I +L +R
Sbjct: 179 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN----------- 227
Query: 1325 MPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK---RHNLIVA 1381
+P P +V+ P + +W+ E ++ L + G +R V ++ V
Sbjct: 228 IPGPHMVLVPKSTLHNWMSEFKRWVPT--LRSVCLIGDKEQRAAFVRDVLLPGEWDVCVT 285
Query: 1382 SYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVL 1441
SY+++ + F+ + Y ++DE H IKN K+KLS+ V++ R++L+GTP+QNN+
Sbjct: 286 SYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 345
Query: 1442 ELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLL 1501
ELWSL +FL+P + F + + D + +Q+ ++ LH + PFLL
Sbjct: 346 ELWSLLNFLLPDVFNSADDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLL 393
Query: 1502 RRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPK 1561
RR+K DV + LPPK Y LS +Q + Y D+D S+ + +
Sbjct: 394 RRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK----DIDILNSAGKMDKM----- 444
Query: 1562 LKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQ 1621
+ L LRK CNHP L AE + +H + ++ K+ L +
Sbjct: 445 -----RLLNILMQLRKCCNHPYLF---------DGAEPGPPYTTDMHLVTNSGKMVVLDK 490
Query: 1622 LLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 1681
LL E G+ R+LIF Q+ +LDI+E + + Y RLDG
Sbjct: 491 LL-------PKLKEQGS-------RVLIFSQMTRVLDILEDYCM---WRNYEYCRLDGQT 533
Query: 1682 PPGQRHSIVSRFNNDPSID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1740
P +R ++ +N S V +L+T GGLG+NL AD V+ + DWNP DLQAMDRA
Sbjct: 534 PHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRA 593
Query: 1741 HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQ---ENSSLQSMGTDQLLDL 1797
HRIGQ + V V+R IT T+EE+I+ + K+ + + VI Q + +L +G D++L +
Sbjct: 594 HRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQM 653
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 248 bits (634), Expect = 3e-65
Identities = 181/572 (31%), Positives = 284/572 (49%), Gaps = 66/572 (11%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
+N L++YQ G+ WL L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 801
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R Q++ + N++
Sbjct: 802 ---INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A R++L+GTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P + + + E+ +L + LH+ + P
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET--ILIIRRLHKVLRP 974
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQ-----------AKGVLLTDGSE 1023
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDI---QHA 1613
K K G + + LRK+CNHP + QH E ++ +E L + + + +
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMF---QHIE-ESFSEHLGFTGGIVQGLDLYRAS 1079
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N H++L+FCQ+ S++ I+E
Sbjct: 1080 GKFELLDRILPKLRATN--------------HKVLLFCQMTSLMTIMEDYFA---YRGFK 1122
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R ++ FN S + LL+T GGLGLNL ADTV+ + DWNP +
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI-----SQENSSLQ 1787
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI Q++SS +
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1788 SMGTDQLLDLFTLDKDGKAEKADTST-SGKAS 1818
Q + L+ + + E ST SG AS
Sbjct: 1243 RRAFLQAI----LEHEEQDESRHCSTGSGSAS 1270
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 248 bits (634), Expect = 3e-65
Identities = 181/572 (31%), Positives = 284/572 (49%), Gaps = 66/572 (11%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
+N L++YQ G+ WL L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 801
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R Q++ + N++
Sbjct: 802 ---INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A R++L+GTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P + + + E+ +L + LH+ + P
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET--ILIIRRLHKVLRP 974
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQ-----------AKGVLLTDGSE 1023
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDI---QHA 1613
K K G + + LRK+CNHP + QH E ++ +E L + + + +
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMF---QHIE-ESFSEHLGFTGGIVQGLDLYRAS 1079
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N H++L+FCQ+ S++ I+E
Sbjct: 1080 GKFELLDRILPKLRATN--------------HKVLLFCQMTSLMTIMEDYFA---YRGFK 1122
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R ++ FN S + LL+T GGLGLNL ADTV+ + DWNP +
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI-----SQENSSLQ 1787
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI Q++SS +
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1788 SMGTDQLLDLFTLDKDGKAEKADTST-SGKAS 1818
Q + L+ + + E ST SG AS
Sbjct: 1243 RRAFLQAI----LEHEEQDESRHCSTGSGSAS 1270
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 248 bits (634), Expect = 3e-65
Identities = 181/572 (31%), Positives = 284/572 (49%), Gaps = 66/572 (11%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
+N L++YQ G+ WL L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 801
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R Q++ + N++
Sbjct: 802 ---INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A R++L+GTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P + + + E+ +L + LH+ + P
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET--ILIIRRLHKVLRP 974
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQ-----------AKGVLLTDGSE 1023
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDI---QHA 1613
K K G + + LRK+CNHP + QH E ++ +E L + + + +
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMF---QHIE-ESFSEHLGFTGGIVQGLDLYRAS 1079
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N H++L+FCQ+ S++ I+E
Sbjct: 1080 GKFELLDRILPKLRATN--------------HKVLLFCQMTSLMTIMEDYFA---YRGFK 1122
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R ++ FN S + LL+T GGLGLNL ADTV+ + DWNP +
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI-----SQENSSLQ 1787
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI Q++SS +
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1788 SMGTDQLLDLFTLDKDGKAEKADTST-SGKAS 1818
Q + L+ + + E ST SG AS
Sbjct: 1243 RRAFLQAI----LEHEEQDESRHCSTGSGSAS 1270
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 248 bits (634), Expect = 3e-65
Identities = 181/530 (34%), Positives = 264/530 (49%), Gaps = 75/530 (14%)
Query: 1265 ELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAEC 1324
ELR YQ +G+NWLA IL D+MGLGKT+Q+I L H Q Y
Sbjct: 480 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFL-NYLFHEHQLYG------- 531
Query: 1325 MPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQ------HQVKR--H 1376
P L+V P + W E+ + S+ +N + Y G R ++ HQ KR
Sbjct: 532 ---PFLLVVPLSTLTSWQREIQTWASQ--MNAVVYLGDINSRNMIRTHEWTHHQTKRLKF 586
Query: 1377 NLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPI 1436
N+++ +Y+++ D F + + + +DE H +KN + L K + +N+R++++GTP+
Sbjct: 587 NILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 646
Query: 1437 QNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQV 1496
QN++ ELWSL F+MP + F +GK +E G + LH+++
Sbjct: 647 QNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG-------------REYGYAS---LHKEL 690
Query: 1497 LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEE 1556
PFLLRR+K+DV + LP K+ Q +S LQ Q Y+ K
Sbjct: 691 EPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKA-------------- 736
Query: 1557 TEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKL 1616
K +T + L+K CNH L+ P + EF E L H I+ + KL
Sbjct: 737 LSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQ------HLIRSSGKL 790
Query: 1617 SALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLR 1676
L +LL+ E G +R+LIF Q+ MLDI+ L P + R
Sbjct: 791 ILLDKLLI-------RLRERG-------NRVLIFSQMVRMLDILAEYLKYRQFP---FQR 833
Query: 1677 LDGSIPPGQRHSIVSRFNNDPSIDV-LLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1735
LDGSI R + FN + S D LL+T GGLG+NL ADTVV + DWNP DLQ
Sbjct: 834 LDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 893
Query: 1736 AMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSS 1785
A RAHRIGQK+ VN+YRL+T+G++EE I+ K KM + + VI + +++
Sbjct: 894 AQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTT 943
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 248 bits (633), Expect = 4e-65
Identities = 185/564 (32%), Positives = 282/564 (50%), Gaps = 80/564 (14%)
Query: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325
L+ YQ+ G+NWLA ++K+ L+GIL D+MGLGKT+Q+I LA + QE
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG------ 546
Query: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVA 1381
P L+V P + +W+ EV +C L L Y G ER +++ + + +N+IV
Sbjct: 547 --PHLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVT 602
Query: 1382 SYDVV---RNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438
+Y+ +D FR +K NY I DEGH++KN + + + + AN R++L+GTP+QN
Sbjct: 603 TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL- 1497
N+LEL SL +F+MP + R S D +S ++ A +Q++
Sbjct: 663 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIK 716
Query: 1498 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEET 1557
PF+LRR+KE+VL+ LPPK + C +S Q QLY K ++++ + T
Sbjct: 717 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKK-----SINNLVTEKNT 771
Query: 1558 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKL----------------- 1600
E + + LRK+ NHP L H ++ T AEKL
Sbjct: 772 E---------MCNVMMQLRKMANHPLL-----HRQYYT-AEKLKEMSQLMLKEPTHCEAN 816
Query: 1601 ---------AVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESG---TESVVAQHRIL 1648
+ + LH + + QL +D L +G G +E R++
Sbjct: 817 PDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVV 876
Query: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708
+F Q MLDI+E LLK H YLRLDG +R ++ FN D I V LL+T
Sbjct: 877 LFSQFTMMLDILEV-LLKHH--QHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKA 933
Query: 1709 GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQ 1768
GGLG+NLT A+ V+ + D NP D QA DR HR+GQ + V V +LI++GT+EE ++ +
Sbjct: 934 GGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 993
Query: 1769 KFKMNIANTVISQENSSLQSMGTD 1792
+ K+ + + + + SM D
Sbjct: 994 QQKLKLEQDMTTVDEGDEGSMPAD 1017
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 248 bits (633), Expect = 4e-65
Identities = 185/564 (32%), Positives = 282/564 (50%), Gaps = 80/564 (14%)
Query: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325
L+ YQ+ G+NWLA ++K+ L+GIL D+MGLGKT+Q+I LA + QE
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG------ 546
Query: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVA 1381
P L+V P + +W+ EV +C L L Y G ER +++ + + +N+IV
Sbjct: 547 --PHLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVT 602
Query: 1382 SYDVV---RNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438
+Y+ +D FR +K NY I DEGH++KN + + + + AN R++L+GTP+QN
Sbjct: 603 TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL- 1497
N+LEL SL +F+MP + R S D +S ++ A +Q++
Sbjct: 663 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIK 716
Query: 1498 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEET 1557
PF+LRR+KE+VL+ LPPK + C +S Q QLY K ++++ + T
Sbjct: 717 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKK-----SINNLVTEKNT 771
Query: 1558 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKL----------------- 1600
E + + LRK+ NHP L H ++ T AEKL
Sbjct: 772 E---------MCNVMMQLRKMANHPLL-----HRQYYT-AEKLKEMSQLMLKEPTHCEAN 816
Query: 1601 ---------AVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESG---TESVVAQHRIL 1648
+ + LH + + QL +D L +G G +E R++
Sbjct: 817 PDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVV 876
Query: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708
+F Q MLDI+E LLK H YLRLDG +R ++ FN D I V LL+T
Sbjct: 877 LFSQFTMMLDILEV-LLKHH--QHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKA 933
Query: 1709 GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQ 1768
GGLG+NLT A+ V+ + D NP D QA DR HR+GQ + V V +LI++GT+EE ++ +
Sbjct: 934 GGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 993
Query: 1769 KFKMNIANTVISQENSSLQSMGTD 1792
+ K+ + + + + SM D
Sbjct: 994 QQKLKLEQDMTTVDEGDEGSMPAD 1017
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 248 bits (632), Expect = 5e-65
Identities = 169/527 (32%), Positives = 265/527 (50%), Gaps = 56/527 (10%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
+N L++YQ G+ WL L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 801
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R Q++ + N++
Sbjct: 802 ---INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A R++L+GTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P + + + E+ +L + LH+ + P
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET--ILIIRRLHKVLRP 974
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQ-----------AKGVLLTDGSE 1023
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDI---QHA 1613
K K G + + LRK+CNHP + QH E ++ +E L + + + +
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMF---QHIE-ESFSEHLGFTGGIVQGLDLYRAS 1079
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N H++L+FCQ+ S++ I+E
Sbjct: 1080 GKFELLDRILPKLRATN--------------HKVLLFCQMTSLMTIMEDYFA---YRGFK 1122
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R ++ FN S + LL+T GGLGLNL ADTV+ + DWNP +
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI 1779
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 248 bits (632), Expect = 5e-65
Identities = 169/527 (32%), Positives = 265/527 (50%), Gaps = 56/527 (10%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
+N L++YQ G+ WL L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 801
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R Q++ + N++
Sbjct: 802 ---INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A R++L+GTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P + + + E+ +L + LH+ + P
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET--ILIIRRLHKVLRP 974
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQ-----------AKGVLLTDGSE 1023
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDI---QHA 1613
K K G + + LRK+CNHP + QH E ++ +E L + + + +
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMF---QHIE-ESFSEHLGFTGGIVQGLDLYRAS 1079
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N H++L+FCQ+ S++ I+E
Sbjct: 1080 GKFELLDRILPKLRATN--------------HKVLLFCQMTSLMTIMEDYFA---YRGFK 1122
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R ++ FN S + LL+T GGLGLNL ADTV+ + DWNP +
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI 1779
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 248 bits (632), Expect = 5e-65
Identities = 169/527 (32%), Positives = 265/527 (50%), Gaps = 56/527 (10%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
+N L++YQ G+ WL L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 801
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R Q++ + N++
Sbjct: 802 ---INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A R++L+GTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P + + + E+ +L + LH+ + P
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET--ILIIRRLHKVLRP 974
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQ-----------AKGVLLTDGSE 1023
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDI---QHA 1613
K K G + + LRK+CNHP + QH E ++ +E L + + + +
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMF---QHIE-ESFSEHLGFTGGIVQGLDLYRAS 1079
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N H++L+FCQ+ S++ I+E
Sbjct: 1080 GKFELLDRILPKLRATN--------------HKVLLFCQMTSLMTIMEDYFA---YRGFK 1122
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R ++ FN S + LL+T GGLGLNL ADTV+ + DWNP +
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI 1779
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 248 bits (632), Expect = 5e-65
Identities = 169/527 (32%), Positives = 265/527 (50%), Gaps = 56/527 (10%)
Query: 1262 INAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
+N L++YQ G+ WL L L+GIL D+MGLGKT+Q+I ++ E+ R
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALIT-----YLMEHKR--- 801
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK--RHNLI 1379
+ P L++ P + +W E K+ + + Y G P R Q++ + N++
Sbjct: 802 ---INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 1380 VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVK-QLTANYRIILSGTPIQN 1438
+ +Y+ + D I++ Y I+DEGH +KN KL++ + A R++L+GTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
+ ELW+L +FL+P + F + P + + + E+ +L + LH+ + P
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET--ILIIRRLHKVLRP 974
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K++V LP K+ C +S LQ LY L++ +E
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQ-----------AKGVLLTDGSE 1023
Query: 1559 KPKLKATGH--VFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDI---QHA 1613
K K G + + LRK+CNHP + QH E ++ +E L + + + +
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMF---QHIE-ESFSEHLGFTGGIVQGLDLYRAS 1079
Query: 1614 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1673
K L ++L N H++L+FCQ+ S++ I+E
Sbjct: 1080 GKFELLDRILPKLRATN--------------HKVLLFCQMTSLMTIMEDYFA---YRGFK 1122
Query: 1674 YLRLDGSIPPGQRHSIVSRFNNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1732
YLRLDG+ R ++ FN S + LL+T GGLGLNL ADTV+ + DWNP +
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1733 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI 1779
DLQA DRAHRIGQ+ V V RL T ++EEKI+ K+K+N+ VI
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 247 bits (631), Expect = 7e-65
Identities = 187/564 (33%), Positives = 280/564 (49%), Gaps = 82/564 (14%)
Query: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325
L+ YQ+ G+NWLA ++K+ L+GIL D+MGLGKT+Q+I LA + QE
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG------ 546
Query: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVA 1381
P L+V P + +W+ EV +C L L Y G ER +++ + + +N+IV
Sbjct: 547 --PHLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVT 602
Query: 1382 SYDVV---RNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438
+Y+ +D FR +K NY I DEGH++KN + + + + AN R++L+GTP+QN
Sbjct: 603 TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL- 1497
N+LEL SL +F+MP + R S D +S ++ A +Q++
Sbjct: 663 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIK 716
Query: 1498 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEET 1557
PF+LRR+KE+VL+ LPPK + C +S Q QLY K S L + T
Sbjct: 717 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKK-------SINNLEKNT 769
Query: 1558 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKL----------------- 1600
E + + LRK+ NHP L H ++ T AEKL
Sbjct: 770 E---------MCNVMMQLRKMANHPLL-----HRQYYT-AEKLKEMSQLMLKEPTHCEAN 814
Query: 1601 ---------AVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESG---TESVVAQHRIL 1648
+ + LH + + QL +D L +G G +E R++
Sbjct: 815 PDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVV 874
Query: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708
+F Q MLDI+E LLK H YLRLDG +R ++ FN D I V LL+T
Sbjct: 875 LFSQFTMMLDILEV-LLKHH--QHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKA 931
Query: 1709 GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQ 1768
GGLG+NLT A+ V+ + D NP D QA DR HR+GQ + V V +LI++GT+EE ++ +
Sbjct: 932 GGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 991
Query: 1769 KFKMNIANTVISQENSSLQSMGTD 1792
+ K+ + + + + SM D
Sbjct: 992 QQKLKLEQDMTTVDEGDEGSMPAD 1015
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 247 bits (630), Expect = 9e-65
Identities = 175/565 (30%), Positives = 275/565 (48%), Gaps = 83/565 (14%)
Query: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325
+R YQ +G+ WL L + ++GIL D+MGLGKT+Q I +A + +
Sbjct: 223 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA------------LMIQRGV 270
Query: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKR-------HNL 1378
P P LV P + +W+ E +F + + Y G ER +L + + H +
Sbjct: 271 PGPFLVCGPLSTLPNWMAEFKRFTPD--IPTMLYHGTQEERQKLVRNIYKRKGTLQIHPV 328
Query: 1379 IVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438
++ S+++ D + ++ + Y I+DEGH IKN K +L + +K+ A+ +++L+GTP+QN
Sbjct: 329 VITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQN 388
Query: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
N+ ELWSL +FL+P + F + + L+ ++E+E VL M LH+ + P
Sbjct: 389 NLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM--LHQILTP 446
Query: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
FLLRR+K DV ++PPK Y LS Q Y V+ T+++ S E E
Sbjct: 447 FLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAI--------VNRTIANMFGSSEKE 498
Query: 1559 KPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAP---- 1614
+L TG + + RK N+ + +F EKL Q D + A
Sbjct: 499 TIELSPTG---RPKRRTRKSINYSKI------DDFPNELEKLISQIQPEVDRERAVVEVN 549
Query: 1615 ---------KLSALKQLLLDC------------------GLGNGSTSESGTESVVAQ--- 1644
KL + LL C + + SG ++ +
Sbjct: 550 IPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLP 609
Query: 1645 ------HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPS 1698
H++L+F Q+ SMLDI+ + HL + RLDGS+ +R + FN DP
Sbjct: 610 ELKKRGHKVLLFSQMTSMLDIL---MDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPE 666
Query: 1699 IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1758
+ + L++T GGLG+NLT ADTV+ + DWNP DLQA DR HRIGQ + V VYRL+T
Sbjct: 667 VFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTAN 726
Query: 1759 TLEEKIMGLQKFKMNIANTVISQEN 1783
T+++KI+ K + +I + +
Sbjct: 727 TIDQKIVERAAAKRKLEKLIIHKNH 751
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 246 bits (628), Expect = 1e-64
Identities = 181/559 (32%), Positives = 275/559 (49%), Gaps = 87/559 (15%)
Query: 1245 EQLLDGKKLENYKIPVPINAE------LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKT 1298
E L + +K N I ++ LR YQ G+NWL L + ++GIL D+MGLGKT
Sbjct: 156 ELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKT 215
Query: 1299 LQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLH 1358
LQ+I +L +R +P P +V+ P + +W++E ++ L +
Sbjct: 216 LQTIALLGYLKHYRN-----------IPGPHMVLVPKSTLHNWMNEFKRWVPS--LRVIC 262
Query: 1359 YTGPPTER---IRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTK 1415
+ G R IR + ++ V SY++V + F+ + Y ++DE H IKN K+K
Sbjct: 263 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 322
Query: 1416 LSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDA 1475
LS+ V++ + R++L+GTP+QNN+ ELW+L +FL+P + F + + D
Sbjct: 323 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF--------DT 374
Query: 1476 RSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDF 1535
++ +Q+ ++ LH + PFLLRR+K DV + LPPK Y LS +Q + Y
Sbjct: 375 KNCLGDQKL----VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKI 430
Query: 1536 AKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKT 1595
D+D SS + + + L LRK CNHP L + T
Sbjct: 431 LMK----DIDVLNSSGKMDKM----------RLLNILMQLRKCCNHPYLFDGAEPGPPYT 476
Query: 1596 TAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKS 1655
T E H + ++ K+ L +LL E G+ R+LIF Q+
Sbjct: 477 TDE---------HIVSNSGKMVVLDKLL-------AKLKEQGS-------RVLIFSQMTR 513
Query: 1656 MLDIVEHDLLKPHLPSVTYLRLDGSIPP-------------GQRHSIVSRFNNDPSIDVL 1702
+LDI+E + Y RLDG P GQR +I + + S +
Sbjct: 514 LLDILEDYCM---WRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIF 570
Query: 1703 LLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1762
+L+T GGLG+NL AD V+ + DWNP DLQAMDRAHRIGQK+ V V+RLIT T+EE
Sbjct: 571 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 630
Query: 1763 KIMGLQKFKMNIANTVISQ 1781
+I+ + K+ + + VI Q
Sbjct: 631 RIVERAEIKLRLDSIVIQQ 649
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 241 bits (616), Expect = 4e-63
Identities = 181/537 (33%), Positives = 259/537 (48%), Gaps = 85/537 (15%)
Query: 1263 NAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLA 1322
N ELR YQ +G+NWLA IL D+MGLGKT+Q+I L+ H+ Q Y
Sbjct: 481 NLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLF-HQHQLYG----- 534
Query: 1323 ECMPLPSLVVCPPTLTGHWVDE-------------VGKFCSREYLNPLHYTGPPTERIRL 1369
P L+V P + W E +G SR + + T+R++
Sbjct: 535 -----PFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKF 589
Query: 1370 QHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRI 1429
N ++ +Y+++ D +I + + +DE H +KN + L K + +N+R+
Sbjct: 590 -------NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRL 642
Query: 1430 ILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAM 1489
+++GTP+QN++ ELWSL F+MP F +GK RE
Sbjct: 643 LITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-----------GREN-----GY 686
Query: 1490 DALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS 1549
+LH+ + PFLLRR+K+DV + LP K+ Q +S LQ Q Y+ K T
Sbjct: 687 QSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG 746
Query: 1550 SATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHD 1609
S T + L+K CNH L+ P+ E + E L L
Sbjct: 747 S--------------TSGFLNIVMELKKCCNHCYLIKPPEENERENGQEIL------LSL 786
Query: 1610 IQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHL 1669
I+ + KL L +LL E G +R+LIF Q+ MLDI+ L H
Sbjct: 787 IRSSGKLILLDKLLT-------RLRERG-------NRVLIFSQMVRMLDILAEYLTIKHY 832
Query: 1670 PSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDV-LLLTTHVGGLGLNLTGADTVVFVEHDW 1728
P + RLDGSI R + FN D S D LL+T GGLG+NL ADTVV + DW
Sbjct: 833 P---FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 889
Query: 1729 NPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSS 1785
NP DLQA RAHRIGQK+ VN+YRL+T+GT+EE+I+ K KM + + VI + +++
Sbjct: 890 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTT 946
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 236 bits (602), Expect = 2e-61
Identities = 185/572 (32%), Positives = 278/572 (48%), Gaps = 79/572 (13%)
Query: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325
LR YQ +GVNWLA + IL D+MGLGKT Q+I + Y +L +
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFI---------YLAGRLNDEG 96
Query: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK---RHNLIVAS 1382
P L++CP ++ +W +E+ +F L+ + Y G ER LQ +K R ++++ +
Sbjct: 97 PF--LILCPLSVLSNWKEEMQRFAPG--LSCVTYAGDKEERACLQQDLKQESRFHVLLTT 152
Query: 1383 YDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLE 1442
Y++ D F ++ ++ ++DE H +KN + L K + + + + ++L+GTPIQN++ E
Sbjct: 153 YEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 212
Query: 1443 LWSLFDFLMPGFLGTER--QFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFL 1500
L+SL F+ P E F RY + +E E+ LH+ + PFL
Sbjct: 213 LYSLLSFVEPDLFSKEEVGDFIQRY----------QDIEKESESA----SELHKLLQPFL 258
Query: 1501 LRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKP 1560
LRR+K +V +LP K Y +S LQ + Y K+ D+D A +E +K
Sbjct: 259 LRRVKAEVATELPKKTEVVIYHGMSALQKKYY----KAILMKDLD-----AFENETAKKV 309
Query: 1561 KLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALK 1620
KL+ L LRK +HP L PE + L + LH L L
Sbjct: 310 KLQ------NILSQLRKCVDHPYL-FDGVEPEPFEVGDHLTEASGKLH------LLDKLL 356
Query: 1621 QLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGS 1680
L G HR+L+F Q+ MLDI++ + +Y R+DGS
Sbjct: 357 AFLYSGG-----------------HRVLLFSQMTQMLDILQDYM---DYRGYSYERVDGS 396
Query: 1681 IPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1740
+ +RH + F P I V LL+T GG+G+NLT ADTV+FV+ D+NP DLQA RA
Sbjct: 397 VRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARA 455
Query: 1741 HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSL--QSMGTDQLLDLF 1798
HRIGQ + V V RLI R T+EE + K+ + N +I + +L Q D L L
Sbjct: 456 HRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADLQLS 515
Query: 1799 TLDKDG--KAEKADTSTSGKASMKSILENLSD 1828
+ K G K ++ ST + ++SIL D
Sbjct: 516 EILKFGLDKLLASEGSTMDEIDLESILGETKD 547
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 234 bits (597), Expect = 6e-61
Identities = 180/584 (30%), Positives = 288/584 (49%), Gaps = 58/584 (9%)
Query: 1249 DGKKLENYKIPVPINAE------LRKYQQDGVNWL-AFLNKYKLHG----ILCDDMGLGK 1297
D KL+ K+PV + + LR +Q++GV +L + ++ G I+ D+MGLGK
Sbjct: 130 DQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGK 189
Query: 1298 TLQSICILAGDHCHRAQEYARSKLAECMPL--PSLVVCPPTLTGHWVDEVGKFCSREYLN 1355
TLQ I ++ + EC P ++VV P +L +W +EVGK+ +
Sbjct: 190 TLQCITLMWT---------LLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGR-IQ 239
Query: 1356 PLHYTGPPTERI--RLQHQVKRHN------LIVASYDVVRNDIDFFRNIKFNYCILDEGH 1407
PL G + I +L+ + + +++ SY+ R + + I DEGH
Sbjct: 240 PLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGH 299
Query: 1408 VIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGK 1467
+KN + + +A+ L + R+++SGTPIQN++LE +SL F+ G LGT +F +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359
Query: 1468 PILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPL 1527
PIL RDA +S +++ G + L V L+RR + + + LP KI Q C L+PL
Sbjct: 360 PILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPL 419
Query: 1528 QVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLT 1587
Q +LY+ F + A +EE + K+ + ++ L+KLCNHPAL+
Sbjct: 420 QTELYKRFLR------------QAKPAEELLEGKMSVSS--LSSITSLKKLCNHPALIYD 465
Query: 1588 PQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRI 1647
E L + P+LS K L+LD L + S ++
Sbjct: 466 KCVEEEDGFVGALDLFPPGYSSKALEPQLSG-KMLVLDYILAVTRSRSS--------DKV 516
Query: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSID-VLLLTT 1706
++ LD+ E L + Y+RLDG++ +R +V RFN+ S D V +L++
Sbjct: 517 VLVSNYTQTLDLFE-KLCRAR--RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
Query: 1707 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1766
GG GLNL GA+ +V + DWNP D QAM R R GQK+ +YRL++ GT+EEKI
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633
Query: 1767 LQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKAD 1810
Q K +++ V+ +E + +L +LF LD+ ++ D
Sbjct: 634 RQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEASLSDTHD 677
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 234 bits (597), Expect = 6e-61
Identities = 180/584 (30%), Positives = 288/584 (49%), Gaps = 58/584 (9%)
Query: 1249 DGKKLENYKIPVPINAE------LRKYQQDGVNWL-AFLNKYKLHG----ILCDDMGLGK 1297
D KL+ K+PV + + LR +Q++GV +L + ++ G I+ D+MGLGK
Sbjct: 130 DQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGK 189
Query: 1298 TLQSICILAGDHCHRAQEYARSKLAECMPL--PSLVVCPPTLTGHWVDEVGKFCSREYLN 1355
TLQ I ++ + EC P ++VV P +L +W +EVGK+ +
Sbjct: 190 TLQCITLMWT---------LLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGR-IQ 239
Query: 1356 PLHYTGPPTERI--RLQHQVKRHN------LIVASYDVVRNDIDFFRNIKFNYCILDEGH 1407
PL G + I +L+ + + +++ SY+ R + + I DEGH
Sbjct: 240 PLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGH 299
Query: 1408 VIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGK 1467
+KN + + +A+ L + R+++SGTPIQN++LE +SL F+ G LGT +F +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359
Query: 1468 PILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPL 1527
PIL RDA +S +++ G + L V L+RR + + + LP KI Q C L+PL
Sbjct: 360 PILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPL 419
Query: 1528 QVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLT 1587
Q +LY+ F + A +EE + K+ + ++ L+KLCNHPAL+
Sbjct: 420 QTELYKRFLR------------QAKPAEELLEGKMSVSS--LSSITSLKKLCNHPALIYD 465
Query: 1588 PQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRI 1647
E L + P+LS K L+LD L + S ++
Sbjct: 466 KCVEEEDGFVGALDLFPPGYSSKALEPQLSG-KMLVLDYILAVTRSRSS--------DKV 516
Query: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSID-VLLLTT 1706
++ LD+ E L + Y+RLDG++ +R +V RFN+ S D V +L++
Sbjct: 517 VLVSNYTQTLDLFE-KLCRAR--RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
Query: 1707 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1766
GG GLNL GA+ +V + DWNP D QAM R R GQK+ +YRL++ GT+EEKI
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633
Query: 1767 LQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKAD 1810
Q K +++ V+ +E + +L +LF LD+ ++ D
Sbjct: 634 RQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEASLSDTHD 677
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 229 bits (583), Expect = 2e-59
Identities = 172/572 (30%), Positives = 281/572 (49%), Gaps = 70/572 (12%)
Query: 1258 IPVPINAELRKYQQDGVNWLAFLNKYKLHG---ILCDDMGLGKTLQSICILAGD-HCHRA 1313
IP IN LR YQ++G FL + +HG IL DDMGLGKT+Q I LA H
Sbjct: 126 IPYTINRYLRDYQREGTR---FLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGT 182
Query: 1314 QEYARSKLAECM-------PLPS------LVVCPPTLTGHWVDEVGKFCSREYLNPLHYT 1360
+E + + E + PL S L+V P ++ +W DE+ + + LH
Sbjct: 183 REDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGN 241
Query: 1361 GPPTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAV 1420
E IR++ ++ + + +Y+ +R +D +++++ I+DE H IKN K ++++ +
Sbjct: 242 RKDNELIRVKQ--RKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVM 299
Query: 1421 KQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 1480
K L N RI L+GT +QNN+ ELW + D+ +PG LG+ F ++ P+ + ++ R
Sbjct: 300 KALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKR 359
Query: 1481 EQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRA 1540
E G AM L +++ + LRR K + LP K + YC+L+ Q +Y+ ++
Sbjct: 360 ELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETED 419
Query: 1541 KCDVDETVSSATLSEETEKPKL--KATGH-------VFQALQYLRKLCNHPALV------ 1585
+ ++ T ++ K H L L+K+ NH AL+
Sbjct: 420 VTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTS 479
Query: 1586 -------------LTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGS 1632
+ + P+F ++ A + +L D +++ K+ L+QLL C
Sbjct: 480 KQQETLIKRICDQVFSRFPDFVQKSKDAAFE--TLSDPKYSGKMKVLQQLLNHCRKN--- 534
Query: 1633 TSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSR 1692
+ ++L+F +LD+++ + L Y RLDGS +R IV
Sbjct: 535 -----------RDKVLLFSFSTKLLDVLQQYCMASGLD---YRRLDGSTKSEERLKIVKE 580
Query: 1693 FNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1752
FN+ +++ L++T GGLGLN GA+ VV + WNP DLQA+DRA+RIGQ R V V
Sbjct: 581 FNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVL 640
Query: 1753 RLITRGTLEEKIMGLQKFKMNIANTVISQENS 1784
RLI+ GT+EE + Q +K + V+ EN+
Sbjct: 641 RLISLGTVEEIMYLRQIYKQQLHCVVVGSENA 672
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 228 bits (582), Expect = 3e-59
Identities = 172/557 (30%), Positives = 270/557 (48%), Gaps = 59/557 (10%)
Query: 1266 LRKYQQDGVNWL-AFLNKYKLHG----ILCDDMGLGKTLQSICILAGDHCHRAQEYARSK 1320
LR +Q++G+ +L + +++G IL D+MGLGKTLQ I ++ C Y
Sbjct: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGP--YGGKP 353
Query: 1321 LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIV 1380
+ + +L+V P +L +W E K+ E + +T ++ + +++++
Sbjct: 354 VIK----KTLIVTPGSLVNNWKKEFQKWLGSERIKI--FTVDQDHKVEEFIKSIFYSVLI 407
Query: 1381 ASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNV 1440
SY+++ +D +NIKF+ I DEGH +KN K + A+ L+ RIIL+GTPIQN++
Sbjct: 408 ISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDL 467
Query: 1441 LELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFL 1500
E ++L DF+ PG LG+ + Y +PI+ SR+ +S E+E G L F+
Sbjct: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFI 527
Query: 1501 LRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKP 1560
LRR +E + + LPPKI +C LQ++LY S + V P
Sbjct: 528 LRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNS-------QVVRFCLQGLLENSP 580
Query: 1561 KLKATGHVFQALQYLRKLCNHPALVLTP-QHPEFKTTAEK--------------LAVQNS 1605
L G L+KLCNHP L+ + E +T +K A N
Sbjct: 581 HLICIG-------ALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNP 633
Query: 1606 SLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLL 1665
L + + KL L +LL + + ++++ L+I++ ++
Sbjct: 634 LLFTEKESGKLQVLSKLL------------AVIHELRPTEKVVLVSNYTQTLNILQ-EVC 680
Query: 1666 KPHLPSVTYLRLDGSIPPGQRHSIVSRFNND-PSIDVLLLTTHVGGLGLNLTGADTVVFV 1724
K H Y RLDG P QR IV FN+ S + LL++ GG+GLNL G ++
Sbjct: 681 KRH--GYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILY 738
Query: 1725 EHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENS 1784
+ DWNP D+QAM R R GQK V++YRL+T GT+EEKI Q K + V+ +
Sbjct: 739 DIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKT 798
Query: 1785 SLQ-SMGTDQLLDLFTL 1800
S ++L +LFTL
Sbjct: 799 SEHIQFSVEELKNLFTL 815
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 222 bits (565), Expect = 3e-57
Identities = 181/562 (32%), Positives = 271/562 (48%), Gaps = 90/562 (16%)
Query: 1263 NAELRKYQQDGVNWLAFLNKYKLHG-ILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
N +LR+YQ +GVNWL F N Y + IL D+MGLGKT+QSI L + Y +
Sbjct: 965 NNKLREYQLEGVNWLLF-NWYNMRNCILADEMGLGKTIQSITFLY-------EIYLKG-- 1014
Query: 1322 AECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQ----------- 1370
+ P LV+ P + +W E F + LN + Y G R +Q
Sbjct: 1015 ---IHGPFLVIAPLSTIPNWERE---FRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG 1068
Query: 1371 HQVK---RHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANY 1427
+K + + I+ +++++ D RNI + ++DE H +KN KL + +K + +
Sbjct: 1069 RVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEH 1128
Query: 1428 RIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVL 1487
+++L+GTP+QN V EL+SL FL P +E F +G D ++ + Q+
Sbjct: 1129 KVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG-------DLKTEEQVQK---- 1177
Query: 1488 AMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDET 1547
L + P +LRR+KEDV ++L PK L+ +Q + Y RA + + T
Sbjct: 1178 ----LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYY------RAILEKNFT 1227
Query: 1548 VSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHP---EFKTT--AEKLAV 1602
S + P L T + LRK CNHP L+ + EFK T AE
Sbjct: 1228 FLSKG-GGQANVPNLLNT------MMELRKCCNHPYLINGAEEKILEEFKETHNAESPDF 1280
Query: 1603 QNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEH 1662
Q ++ IQ A KL + +LL G HR+LIF Q+ LDI+E
Sbjct: 1281 QLQAM--IQAAGKLVLIDKLLPKLKAGG--------------HRVLIFSQMVRCLDILED 1324
Query: 1663 DLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNN-DPSIDVLLLTTHVGGLGLNLTGADTV 1721
L++ P Y R+DG + R + + RF+ D V LL T GGLG+NLT ADT
Sbjct: 1325 YLIQRRYP---YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTC 1381
Query: 1722 VFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI-- 1779
+ + DWNP DLQA R HRIGQ + V +YRLITR + E ++ K+ + V+
Sbjct: 1382 IIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 1441
Query: 1780 --SQENSS--LQSMGTDQLLDL 1797
+EN++ +Q + ++ DL
Sbjct: 1442 MSGRENATNGVQQLSKKEIEDL 1463
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 221 bits (564), Expect = 4e-57
Identities = 179/576 (31%), Positives = 276/576 (47%), Gaps = 72/576 (12%)
Query: 1262 INAELRKYQQDGVNWLAFLNKY-KLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSK 1320
++ +L ++Q++G+ +L L + + GIL DDMGLGKT+Q I L+G +
Sbjct: 92 LHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHV--- 148
Query: 1321 LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPT-ERIRLQHQVKRHN-L 1378
L++ P L WV E K+ + H GP ER R +++++ N +
Sbjct: 149 ---------LLIMPTNLINTWVKEFIKWTPGMRVKTFH--GPSKDERTRNLNRIQQRNGV 197
Query: 1379 IVASYDVVRND---IDFFRNIKF--NYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSG 1433
I+ +Y ++ N+ + FR +F +Y ILDE H IK TK + + + A+ R++L+G
Sbjct: 198 IITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTG 257
Query: 1434 TPIQNNVLELWSLFDFLMPG-FLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDAL 1492
TPIQNN+ ELWSLFDF G LGT + F Y PI +R+ ++ E+ G + L
Sbjct: 258 TPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENL 317
Query: 1493 HRQVLPFLLRRMKEDV-----------LQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAK 1541
+ P+ LRR KEDV L + P + D C + L + D
Sbjct: 318 MAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDV--DAICEMPSLSRK--NDLIIWIRL 373
Query: 1542 CDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLA 1601
+ E + +S + K L T L L+KLC+HP L+ +A
Sbjct: 374 VPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL----------SARACC 423
Query: 1602 VQNSSLHDIQ------HAPKLSALKQLLLDCGLGNGSTSESGTESVVAQ---------HR 1646
+ N Q +P + + Q+ D + ESG + H+
Sbjct: 424 LLNLGTFSAQDGNEGEDSPDVDHIDQVTDDTLM-----EESGKMIFLMDLLKRLRDEGHQ 478
Query: 1647 ILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPP-GQRHSIVSRFNNDPSIDVLLLT 1705
L+F Q + +L+I+E L H + LR+DG++ +R ++ F + V LLT
Sbjct: 479 TLVFSQSRQILNIIERLLKNRHFKT---LRIDGTVTHLLEREKRINLFQQNKDYSVFLLT 535
Query: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
T VGG+GL LT A VV + WNP D QA+DR +RIGQK V VYRLIT GT+EEKI
Sbjct: 536 TQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 595
Query: 1766 GLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1801
Q FK ++ ++ + + +L +LFT++
Sbjct: 596 RRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIE 631
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 216 bits (549), Expect = 2e-55
Identities = 160/548 (29%), Positives = 257/548 (46%), Gaps = 78/548 (14%)
Query: 1265 ELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAEC 1324
+LR+YQ +G+NWL F + + IL D+MGLGKT+QSI L+ + + R
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS-------EIFLRG----- 507
Query: 1325 MPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQ------------ 1372
+ P L++ P + +W E F + +N + Y G R +Q
Sbjct: 508 IHGPFLIIAPLSTITNWERE---FRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPL 564
Query: 1373 --VKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRII 1430
V + ++++ +++++ D + I ++ I+DE H +KN KL + +K + ++++
Sbjct: 565 SGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVL 624
Query: 1431 LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMD 1490
L+GTP+QN+V EL+SL +FL P +E F +G D ++ + ++
Sbjct: 625 LTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG-------DLKTEEQVKK------- 670
Query: 1491 ALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSS 1550
L + P +LRR+K+DV ++L PK L+ +Q + Y +
Sbjct: 671 -LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYR-------------AILE 716
Query: 1551 ATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHP---EFKTTAEKLAVQNSSL 1607
S T+ ++ + LRK CNHP L+ + +F+ T A
Sbjct: 717 KNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQ 776
Query: 1608 HDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKP 1667
IQ A KL + +LL + + H++LIF Q+ LDI+E L++
Sbjct: 777 AMIQAAGKLVLIDKLL--------------PKLIAGGHKVLIFSQMVRCLDILEDYLIQR 822
Query: 1668 HLPSVTYLRLDGSIPPGQRHSIVSRF-NNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEH 1726
TY R+DG + R + + RF D V LL T GGLG+NLT ADT + +
Sbjct: 823 RY---TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 879
Query: 1727 DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSL 1786
DWNP DLQA R HRIGQ + V VYRLITR + E ++ K+ + V+ N
Sbjct: 880 DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 939
Query: 1787 QSMGTDQL 1794
+ G QL
Sbjct: 940 GTNGVQQL 947
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 211 bits (538), Expect = 4e-54
Identities = 162/533 (30%), Positives = 248/533 (46%), Gaps = 78/533 (14%)
Query: 1265 ELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAEC 1324
+LR+YQ +GVNWL F + + IL D+MGLGKT+QSI L QE +
Sbjct: 531 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFL--------QEVYNVGIHG- 581
Query: 1325 MPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQ------------ 1372
P LV+ P + +W E + +N + Y G R +Q
Sbjct: 582 ---PFLVIAPLSTITNWEREFNTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLI 635
Query: 1373 --VKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRII 1430
+ + ++ +++++ +D R I++ I+DE H +KN KL ++K + ++++
Sbjct: 636 PGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVL 695
Query: 1431 LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMD 1490
L+GTP+QN V EL+SL FL P +E +F +G D ++ + Q+
Sbjct: 696 LTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG-------DLKTEEQVQK------- 741
Query: 1491 ALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSS 1550
L + P +LRR+KEDV ++L PK L+ +Q + Y RA + + + S
Sbjct: 742 -LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYY------RAILEKNFSFLS 794
Query: 1551 ATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLH-- 1608
T P L T + LRK CNHP L+ + E + H
Sbjct: 795 KGAGH-TNMPNLLNT------MMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQ 847
Query: 1609 -DIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKP 1667
++ A KL + +LL G H++LIF Q+ LDI+E L++
Sbjct: 848 AMVRSAGKLVLIDKLLPKLKAGG--------------HKVLIFSQMVRCLDILEDYLIQR 893
Query: 1668 HLPSVTYLRLDGSIPPGQRHSIVSRFNN-DPSIDVLLLTTHVGGLGLNLTGADTVVFVEH 1726
Y R+DG + R + + RF+ D V LL T GGLG+NLT ADT + +
Sbjct: 894 RY---LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 950
Query: 1727 DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVI 1779
DWNP DLQA R HRIGQ + V VYRLITR + E ++ K+ + V+
Sbjct: 951 DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVL 1003
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 208 bits (529), Expect = 4e-53
Identities = 166/549 (30%), Positives = 250/549 (45%), Gaps = 78/549 (14%)
Query: 1265 ELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAEC 1324
+LR+YQ +G+NWL F + + IL D+MGLGKT+QSI L L
Sbjct: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLY------------EILLTG 906
Query: 1325 MPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQ------------ 1372
+ P L++ P + +W E F + +N + Y G R +Q
Sbjct: 907 IRGPFLIIAPLSTIANWERE---FRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGRII 963
Query: 1373 --VKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRII 1430
R I+ +++++ I++ I+DE H +KN KL + +K + ++++
Sbjct: 964 RGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023
Query: 1431 LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMD 1490
L+GTP+QN V EL+SL FL P +E F +G D ++ + Q+
Sbjct: 1024 LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFG-------DLKTEEQVQK------- 1069
Query: 1491 ALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSS 1550
L + P +LRR+KEDV + L PK L+ +Q + Y RA + + + S
Sbjct: 1070 -LQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYY------RAILEKNFSFLS 1122
Query: 1551 ATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHP---EFKTTAEKLAVQNSSL 1607
+ T P L T + LRK CNHP L+ + EF+ T A
Sbjct: 1123 KGAGQ-TNVPNLVNT------MMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQ 1175
Query: 1608 HDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKP 1667
IQ A KL + +LL G H++LIF Q+ LDI+E L+
Sbjct: 1176 AMIQSAGKLVLIDKLLPKMKAGG--------------HKVLIFSQMVRCLDILEDYLIHK 1221
Query: 1668 HLPSVTYLRLDGSIPPGQRHSIVSRFNN-DPSIDVLLLTTHVGGLGLNLTGADTVVFVEH 1726
Y R+DG + R + + RF+ D V LL T GGLG+NLT ADT + +
Sbjct: 1222 RY---LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 1278
Query: 1727 DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSL 1786
DWNP DLQA R HRIGQ + V VYRL+TR + E ++ K+ + V+ +
Sbjct: 1279 DWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRE 1338
Query: 1787 QSMGTDQLL 1795
++G Q L
Sbjct: 1339 SNVGGIQQL 1347
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,228,206
Number of Sequences: 37866
Number of extensions: 2883483
Number of successful extensions: 9027
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 8581
Number of HSP's gapped (non-prelim): 247
length of query: 1849
length of database: 18,247,518
effective HSP length: 117
effective length of query: 1732
effective length of database: 13,817,196
effective search space: 23931383472
effective search space used: 23931383472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.