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Search of human proteins with 27437051
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27437051 colony stimulating factor 3 isoform c [Homo
sapiens]
(200 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens] 402 e-112
gi|27437049 colony stimulating factor 3 isoform b precursor [Hom... 384 e-107
gi|4503079 colony stimulating factor 3 isoform a precursor [Homo... 379 e-105
gi|156231353 Niemann-Pick C1-like protein 1 isoform 2 [Homo sapi... 32 0.36
gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo sapi... 32 0.36
gi|7706702 interleukin 23, alpha subunit p19 precursor [Homo sap... 30 1.0
gi|10834984 interleukin 6 precursor [Homo sapiens] 30 1.0
gi|153267448 enolase 3 [Homo sapiens] 30 1.0
gi|153267427 enolase 3 [Homo sapiens] 30 1.0
gi|39930479 DIX domain containing 1 isoform b [Homo sapiens] 30 1.8
gi|83816971 DIX domain containing 1 isoform a [Homo sapiens] 30 1.8
gi|213417919 protein kinase, interferon-inducible double strande... 29 2.3
gi|213417911 protein kinase, interferon-inducible double strande... 29 2.3
gi|4505581 protein kinase, interferon-inducible double stranded ... 29 2.3
gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Hom... 29 3.0
gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Hom... 29 3.0
gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo... 29 3.0
gi|5031905 MyoD family inhibitor [Homo sapiens] 28 5.2
gi|221316624 dystonin isoform 4 [Homo sapiens] 28 6.8
gi|221316622 dystonin isoform 3 [Homo sapiens] 28 6.8
gi|221316618 dystonin isoform 2 [Homo sapiens] 28 6.8
gi|34577047 dystonin isoform 1 [Homo sapiens] 28 6.8
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 28 6.8
gi|76253680 hypothetical protein LOC256957 [Homo sapiens] 28 6.8
gi|224458288 lipoxygenase homology domains 1 isoform 2 [Homo sap... 27 8.9
gi|4758104 cytochrome P450, family 7, subfamily B, polypeptide 1... 27 8.9
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap... 27 8.9
gi|224458290 lipoxygenase homology domains 1 isoform 3 [Homo sap... 27 8.9
gi|4758178 dynein, cytoplasmic 1, intermediate chain 1 isoform a... 27 8.9
gi|145580592 nesprin-3 [Homo sapiens] 27 8.9
>gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens]
Length = 200
Score = 402 bits (1033), Expect = e-112
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MSPEPALSPALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEK 60
MSPEPALSPALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEK
Sbjct: 1 MSPEPALSPALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEK 60
Query: 61 LCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEG 120
LCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEG
Sbjct: 61 LCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEG 120
Query: 121 ISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVA 180
ISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVA
Sbjct: 121 ISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVA 180
Query: 181 SHLQSFLEVSYRVLRHLAQP 200
SHLQSFLEVSYRVLRHLAQP
Sbjct: 181 SHLQSFLEVSYRVLRHLAQP 200
>gi|27437049 colony stimulating factor 3 isoform b precursor [Homo
sapiens]
Length = 204
Score = 384 bits (986), Expect = e-107
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 10 ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCH 69
ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCH
Sbjct: 14 ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCH 73
Query: 70 PEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTL 129
PEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTL
Sbjct: 74 PEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTL 133
Query: 130 DTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEV 189
DTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEV
Sbjct: 134 DTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEV 193
Query: 190 SYRVLRHLAQP 200
SYRVLRHLAQP
Sbjct: 194 SYRVLRHLAQP 204
>gi|4503079 colony stimulating factor 3 isoform a precursor [Homo
sapiens]
Length = 207
Score = 379 bits (972), Expect = e-105
Identities = 191/194 (98%), Positives = 191/194 (98%), Gaps = 3/194 (1%)
Query: 10 ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKL---CATYK 66
ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKL CATYK
Sbjct: 14 ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLVSECATYK 73
Query: 67 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELG 126
LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELG
Sbjct: 74 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELG 133
Query: 127 PTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSF 186
PTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSF
Sbjct: 134 PTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSF 193
Query: 187 LEVSYRVLRHLAQP 200
LEVSYRVLRHLAQP
Sbjct: 194 LEVSYRVLRHLAQP 207
>gi|156231353 Niemann-Pick C1-like protein 1 isoform 2 [Homo
sapiens]
Length = 1332
Score = 32.0 bits (71), Expect = 0.36
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 41 LKCLEQV--RKIQGDGAALQEKLCA-------TYKLCHPEELVLLGHSLGIPWAPLSSCP 91
+ CL RKI GD L +K+C T C ++LV L SL I A L+ CP
Sbjct: 55 VSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSITKALLTRCP 114
Query: 92 S 92
+
Sbjct: 115 A 115
>gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo
sapiens]
Length = 1359
Score = 32.0 bits (71), Expect = 0.36
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 41 LKCLEQV--RKIQGDGAALQEKLCA-------TYKLCHPEELVLLGHSLGIPWAPLSSCP 91
+ CL RKI GD L +K+C T C ++LV L SL I A L+ CP
Sbjct: 55 VSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSITKALLTRCP 114
Query: 92 S 92
+
Sbjct: 115 A 115
>gi|7706702 interleukin 23, alpha subunit p19 precursor [Homo
sapiens]
Length = 189
Score = 30.4 bits (67), Expect = 1.0
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 31/159 (19%)
Query: 57 LQEKLCATYKLCHPEELVLLGH-----------SLGIPWAPLSS-CPSQALQLAG--CLS 102
L +KLC HP L+GH + +P C Q L+ CL
Sbjct: 36 LSQKLCTLAWSAHP----LVGHMDLREEGDEETTNDVPHIQCGDGCDPQGLRDNSQFCLQ 91
Query: 103 QLHSGLFLYQGLLQA-LEGISPELGPTLDTLQLDVADFATTIWQQME----ELGMAPALQ 157
++H GL Y+ LL + + P L P QL + + Q E E P+L
Sbjct: 92 RIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQPEGHHWETQQIPSLS 151
Query: 158 PTQGAMPAFASAFQRRAGGVLVASHLQSFLEVSYRVLRH 196
P+Q +QR + LQ+F+ V+ RV H
Sbjct: 152 PSQ--------PWQRLLLRFKILRSLQAFVAVAARVFAH 182
>gi|10834984 interleukin 6 precursor [Homo sapiens]
Length = 212
Score = 30.4 bits (67), Expect = 1.0
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Query: 45 EQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIP-WAPLSSCPSQALQLAGCLSQ 103
+Q+R I +AL+++ C +C + L ++L +P A C CL +
Sbjct: 55 KQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVK 114
Query: 104 LHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAM 163
+ +GL ++ L+ L+ +Q+ + ++ + L PT A
Sbjct: 115 IITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNAS 174
Query: 164 PAFASAFQRR----AGGVLVASHLQSFLEVSYRVLRHL 197
Q + L+ + FL+ S R LR +
Sbjct: 175 LLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 212
>gi|153267448 enolase 3 [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 1.0
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 107 GLFLYQGLLQALEGISPELGPTLDTLQLDVAD 138
G +L +G+L+A+E I+ LGP L +L VAD
Sbjct: 55 GRYLGKGVLKAVENINSTLGPALLQKKLSVAD 86
>gi|153267427 enolase 3 [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 1.0
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 107 GLFLYQGLLQALEGISPELGPTLDTLQLDVAD 138
G +L +G+L+A+E I+ LGP L +L VAD
Sbjct: 55 GRYLGKGVLKAVENINSTLGPALLQKKLSVAD 86
>gi|39930479 DIX domain containing 1 isoform b [Homo sapiens]
Length = 472
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 4 EPALSPALQLLLWHSAL-WTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKL 61
EP ++P QL++ S L +++E L + LLKC ++ R +QG ALQ++L
Sbjct: 116 EPGVNPEEQLIIIQSRLDQSMEENQDL-------KKELLKCKQEARNLQGIKDALQQRL 167
>gi|83816971 DIX domain containing 1 isoform a [Homo sapiens]
Length = 683
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 4 EPALSPALQLLLWHSAL-WTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKL 61
EP ++P QL++ S L +++E L + LLKC ++ R +QG ALQ++L
Sbjct: 327 EPGVNPEEQLIIIQSRLDQSMEENQDL-------KKELLKCKQEARNLQGIKDALQQRL 378
>gi|213417919 protein kinase, interferon-inducible double stranded
RNA dependent activator isoform 3 [Homo sapiens]
Length = 288
Score = 29.3 bits (64), Expect = 2.3
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 59 EKLCATYKLCHPEELVLL----GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG- 113
EK A + PE + L GHSLG W L + P + + L L L
Sbjct: 161 EKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINL------LKRSLLSIPNT 214
Query: 114 -LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAP 154
+Q L I+ E G + L +D A +Q + EL +P
Sbjct: 215 DYIQLLSEIAKEQGFNITYLDIDELS-ANGQYQCLAELSTSP 255
>gi|213417911 protein kinase, interferon-inducible double stranded
RNA dependent activator isoform 2 [Homo sapiens]
Length = 302
Score = 29.3 bits (64), Expect = 2.3
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 59 EKLCATYKLCHPEELVLL----GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG- 113
EK A + PE + L GHSLG W L + P + + L L L
Sbjct: 175 EKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINL------LKRSLLSIPNT 228
Query: 114 -LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAP 154
+Q L I+ E G + L +D A +Q + EL +P
Sbjct: 229 DYIQLLSEIAKEQGFNITYLDIDELS-ANGQYQCLAELSTSP 269
>gi|4505581 protein kinase, interferon-inducible double stranded RNA
dependent activator isoform 1 [Homo sapiens]
Length = 313
Score = 29.3 bits (64), Expect = 2.3
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 59 EKLCATYKLCHPEELVLL----GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG- 113
EK A + PE + L GHSLG W L + P + + L L L
Sbjct: 186 EKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINL------LKRSLLSIPNT 239
Query: 114 -LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAP 154
+Q L I+ E G + L +D A +Q + EL +P
Sbjct: 240 DYIQLLSEIAKEQGFNITYLDIDELS-ANGQYQCLAELSTSP 280
>gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Homo
sapiens]
Length = 246
Score = 28.9 bits (63), Expect = 3.0
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 77 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 134
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 71 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 128
>gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Homo
sapiens]
Length = 300
Score = 28.9 bits (63), Expect = 3.0
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 77 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 134
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182
>gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo
sapiens]
Length = 300
Score = 28.9 bits (63), Expect = 3.0
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 77 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 134
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182
>gi|5031905 MyoD family inhibitor [Homo sapiens]
Length = 246
Score = 28.1 bits (61), Expect = 5.2
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 119 EGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVL 178
+G P + LD+ LDV A T Q LG P L P P+ +R G L
Sbjct: 63 QGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLL-PNDSGHPSELGGTRRAGNGAL 121
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 27.7 bits (60), Expect = 6.8
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 7 LSPALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYK 66
L+ A Q L +H L ++A L + F+ K LE+ R + + + A
Sbjct: 4881 LAEAEQTLRFHGVLPDDEDA--LRTLIDQHKEFMKK-LEEKRAELNKATTMGDTVLA--- 4934
Query: 67 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQAL 118
+CHP+ + + H + I A + A Q L+ +GL Q LL+AL
Sbjct: 4935 ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRLASALAGLIAKQELLEAL 4986
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 27.7 bits (60), Expect = 6.8
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 7 LSPALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYK 66
L+ A Q L +H L ++A L + F+ K LE+ R + + + A
Sbjct: 4892 LAEAEQTLRFHGVLPDDEDA--LRTLIDQHKEFMKK-LEEKRAELNKATTMGDTVLA--- 4945
Query: 67 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQAL 118
+CHP+ + + H + I A + A Q L+ +GL Q LL+AL
Sbjct: 4946 ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRLASALAGLIAKQELLEAL 4997
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 27.7 bits (60), Expect = 6.8
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 7 LSPALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYK 66
L+ A Q L +H L ++A L + F+ K LE+ R + + + A
Sbjct: 5030 LAEAEQTLRFHGVLPDDEDA--LRTLIDQHKEFMKK-LEEKRAELNKATTMGDTVLA--- 5083
Query: 67 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQAL 118
+CHP+ + + H + I A + A Q L+ +GL Q LL+AL
Sbjct: 5084 ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRLASALAGLIAKQELLEAL 5135
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 27.7 bits (60), Expect = 6.8
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 7 LSPALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYK 66
L+ A Q L +H L ++A L + F+ K LE+ R + + + A
Sbjct: 4852 LAEAEQTLRFHGVLPDDEDA--LRTLIDQHKEFMKK-LEEKRAELNKATTMGDTVLA--- 4905
Query: 67 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQAL 118
+CHP+ + + H + I A + A Q L+ +GL Q LL+AL
Sbjct: 4906 ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRLASALAGLIAKQELLEAL 4957
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 27.7 bits (60), Expect = 6.8
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 7 LSPALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYK 66
L+ A Q L +H L ++A L + F+ K LE+ R + + + A
Sbjct: 4526 LAEAEQTLRFHGVLPDDEDA--LRTLIDQHKEFMKK-LEEKRAELNKATTMGDTVLA--- 4579
Query: 67 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQAL 118
+CHP+ + + H + I A + A Q L+ +GL Q LL+AL
Sbjct: 4580 ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRLASALAGLIAKQELLEAL 4631
>gi|76253680 hypothetical protein LOC256957 [Homo sapiens]
Length = 570
Score = 27.7 bits (60), Expect = 6.8
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 4 EPALSPALQLLLWHSALWTVQEATP----LGPASSLPQSFLLKCLEQVRKIQ 51
E L P LQ L+ S+ EA L P S++ Q FLL+CL Q K Q
Sbjct: 259 EGKLVPVLQTLIKKSSSEASLEAALCLGFLRPCSNMVQEFLLQCLCQGLKTQ 310
>gi|224458288 lipoxygenase homology domains 1 isoform 2 [Homo
sapiens]
Length = 1114
Score = 27.3 bits (59), Expect = 8.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 16 WHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLC 68
WH + V++ +S ++F +C + K +GDG +++ CA K+C
Sbjct: 854 WHLSYVDVKD-------NSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKIC 899
>gi|4758104 cytochrome P450, family 7, subfamily B, polypeptide 1
[Homo sapiens]
Length = 506
Score = 27.3 bits (59), Expect = 8.9
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 29 LGPASSLPQSFLLKCL--EQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAP 86
LG S+ + ++KC E++ K+QG Q + K E+L + H LG WA
Sbjct: 235 LGNVKSIREK-IIKCFSSEKLAKMQGWSEVFQSRQDVLEKYYVHEDLEIGAHHLGFLWAS 293
Query: 87 LSS 89
+++
Sbjct: 294 VAN 296
>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sapiens]
Length = 2211
Score = 27.3 bits (59), Expect = 8.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 16 WHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLC 68
WH + V++ +S ++F +C + K +GDG +++ CA K+C
Sbjct: 1903 WHLSYVDVKD-------NSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKIC 1948
>gi|224458290 lipoxygenase homology domains 1 isoform 3 [Homo
sapiens]
Length = 512
Score = 27.3 bits (59), Expect = 8.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 16 WHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLC 68
WH + V++ +S ++F +C + K +GDG +++ CA K+C
Sbjct: 204 WHLSYVDVKD-------NSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKIC 249
>gi|4758178 dynein, cytoplasmic 1, intermediate chain 1 isoform a
[Homo sapiens]
Length = 645
Score = 27.3 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 1 MSPEPALSPALQLLLWHSALWTVQEATPLGPAS 33
+SPEP L L L W + + TP+ P+S
Sbjct: 68 ISPEPPLVQPLHFLTWDTCYFHYLVPTPMSPSS 100
>gi|145580592 nesprin-3 [Homo sapiens]
Length = 975
Score = 27.3 bits (59), Expect = 8.9
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 51 QGDGAALQEKLCATYKLC--HPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQL 104
QG AAL+ +L T K+C PE V + L + A L+ CP Q G L++L
Sbjct: 34 QGPRAALEARLWETEKICQLEPEGRVRVDLVLRMAEALLACCPGD--QKPGILARL 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,405,409
Number of Sequences: 37866
Number of extensions: 380991
Number of successful extensions: 993
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 31
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.