Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRKRA Sequence: fasta or formatted (302aa) NCBI GI: 213417911
Description:

protein kinase, interferon-inducible double stranded RNA dependent activator isoform 2

Referenced in:

Interferon
RNases and RNA Stability

Other entries for this name:
alt prot [288aa] protein kinase, interferon-inducible double stranded RNA dependen...
alt prot [313aa] protein kinase, interferon-inducible double stranded RNA dependen...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         24           2
 C cysteine            3.3         10           1
 D aspartate           2.6          8           1
 E glutamate           6.3         19           1
 F phenylalanine       3.0          9           1
 G glycine             7.0         21           2
 H histidine           3.6         11           2
 I isoleucine          7.6         23           2
 K lysine              7.6         23           2
 L leucine             8.9         27           2
 M methionine          1.7          5           1
 N asparagine          5.3         16           1
 P proline             5.6         17           1
 Q glutamine           4.6         14           1
 R arginine            3.3         10           1
 S serine              8.3         25           1
 T threonine           6.6         20           2
 V valine              3.3         10           2
 W tryptophan          0.7          2           1
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase, interferon-inducible double strande... 
PRKRA                 0.959   protein kinase, interferon-inducible double stranded ...
PRKRA                 0.946   protein kinase, interferon-inducible double strande...
TARBP2                0.405   TAR RNA binding protein 2 isoform a 
TARBP2                0.394   TAR RNA binding protein 2 isoform b 
TARBP2                0.394   TAR RNA binding protein 2 isoform b 
STAU2                 0.091   staufen homolog 2 
STAU1                 0.083   staufen isoform a 
STAU1                 0.083   staufen isoform b 
STAU1                 0.083   staufen isoform a 
STAU1                 0.083   staufen isoform a 
STAU1                 0.074   staufen isoform c 
ADAR                  0.051   adenosine deaminase, RNA-specific isoform c 
ADAR                  0.046   adenosine deaminase, RNA-specific isoform d 
ADAR                  0.046   adenosine deaminase, RNA-specific isoform a 
ADAR                  0.044   adenosine deaminase, RNA-specific isoform b 
DGCR8                 0.029   DiGeorge syndrome critical region gene 8 
ADARB1                0.022   RNA-specific adenosine deaminase B1 isoform 7 [Homo...
ADARB1                0.022   RNA-specific adenosine deaminase B1 isoform 3 
ADARB1                0.022   RNA-specific adenosine deaminase B1 isoform 2 
ADARB1                0.022   RNA-specific adenosine deaminase B1 isoform 1 
EIF2AK2               0.020   eukaryotic translation initiation factor 2-alpha ki...
EIF2AK2               0.020   eukaryotic translation initiation factor 2-alpha ki...
EIF2AK2               0.020   eukaryotic translation initiation factor 2-alpha kina...
ADARB2                0.019   adenosine deaminase, RNA-specific, B2 
ILF3                  0.017   interleukin enhancer binding factor 3 isoform c [Hom...
ILF3                  0.017   interleukin enhancer binding factor 3 isoform b [Hom...
ILF3                  0.017   interleukin enhancer binding factor 3 isoform a [Hom...
ILF3                  0.015   interleukin enhancer binding factor 3 isoform e [Ho...
ILF3                  0.015   interleukin enhancer binding factor 3 isoform d [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press