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Search of human proteins with 26051268
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26051268 potassium voltage-gated channel KQT-like protein 2
isoform e [Homo sapiens]
(393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26051268 potassium voltage-gated channel KQT-like protein 2 i... 802 0.0
gi|26051260 potassium voltage-gated channel KQT-like protein 2 i... 761 0.0
gi|26051262 potassium voltage-gated channel KQT-like protein 2 i... 759 0.0
gi|26051264 potassium voltage-gated channel KQT-like protein 2 i... 759 0.0
gi|26051266 potassium voltage-gated channel KQT-like protein 2 i... 759 0.0
gi|26638655 potassium voltage-gated channel KQT-like protein 4 i... 482 e-136
gi|26638653 potassium voltage-gated channel KQT-like protein 4 i... 482 e-136
gi|236462242 potassium voltage-gated channel, KQT-like subfamily... 473 e-133
gi|236462079 potassium voltage-gated channel, KQT-like subfamily... 472 e-133
gi|236461942 potassium voltage-gated channel, KQT-like subfamily... 472 e-133
gi|236461719 potassium voltage-gated channel, KQT-like subfamily... 472 e-133
gi|28373065 potassium voltage-gated channel, KQT-like subfamily,... 472 e-133
gi|4758630 potassium voltage-gated channel KQT-like protein 3 [H... 462 e-130
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,... 345 4e-95
gi|32479525 potassium voltage-gated channel, KQT-like subfamily,... 320 2e-87
gi|21217561 Shaw-related voltage-gated potassium channel protein... 104 1e-22
gi|21217563 Shaw-related voltage-gated potassium channel protein... 104 1e-22
gi|24497458 Shaw-related voltage-gated potassium channel protein... 104 1e-22
gi|119395748 potassium voltage-gated channel subfamily A member ... 95 1e-19
gi|88758565 potassium voltage-gated channel, shaker-related subf... 94 2e-19
gi|4504817 potassium voltage-gated channel, shaker-related subfa... 94 2e-19
gi|4826784 potassium voltage-gated channel, Shab-related subfami... 92 6e-19
gi|27436974 potassium voltage-gated channel, Shab-related subfam... 92 1e-18
gi|4826786 Shaw-related voltage-gated potassium channel protein ... 91 2e-18
gi|163792201 Shaw-related voltage-gated potassium channel protei... 91 2e-18
gi|88758576 Shaw-related voltage-gated potassium channel protein... 90 4e-18
gi|24497462 Shaw-related voltage-gated potassium channel protein... 90 4e-18
gi|24497464 Shaw-related voltage-gated potassium channel protein... 90 4e-18
gi|4504821 potassium voltage-gated channel, shaker-related subfa... 89 7e-18
gi|4826782 potassium voltage-gated channel, shaker-related subfa... 89 7e-18
>gi|26051268 potassium voltage-gated channel KQT-like protein 2
isoform e [Homo sapiens]
Length = 393
Score = 802 bits (2071), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG
Sbjct: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
Query: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK
Sbjct: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
Query: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI
Sbjct: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
Query: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF
Sbjct: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
Query: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI
Sbjct: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
Query: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW
Sbjct: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
Query: 361 QYYERTVTVPMYRYRRRAPATKQLFHFLFSICS 393
QYYERTVTVPMYRYRRRAPATKQLFHFLFSICS
Sbjct: 361 QYYERTVTVPMYRYRRRAPATKQLFHFLFSICS 393
>gi|26051260 potassium voltage-gated channel KQT-like protein 2
isoform c [Homo sapiens]
Length = 844
Score = 761 bits (1964), Expect = 0.0
Identities = 373/373 (100%), Positives = 373/373 (100%)
Query: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG
Sbjct: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
Query: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK
Sbjct: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
Query: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI
Sbjct: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
Query: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF
Sbjct: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
Query: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI
Sbjct: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
Query: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW
Sbjct: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
Query: 361 QYYERTVTVPMYR 373
QYYERTVTVPMYR
Sbjct: 361 QYYERTVTVPMYR 373
>gi|26051262 potassium voltage-gated channel KQT-like protein 2
isoform b [Homo sapiens]
Length = 854
Score = 759 bits (1959), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG
Sbjct: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
Query: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK
Sbjct: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
Query: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI
Sbjct: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
Query: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF
Sbjct: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
Query: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI
Sbjct: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
Query: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW
Sbjct: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
Query: 361 QYYERTVTVPMY 372
QYYERTVTVPMY
Sbjct: 361 QYYERTVTVPMY 372
>gi|26051264 potassium voltage-gated channel KQT-like protein 2
isoform a [Homo sapiens]
Length = 872
Score = 759 bits (1959), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG
Sbjct: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
Query: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK
Sbjct: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
Query: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI
Sbjct: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
Query: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF
Sbjct: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
Query: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI
Sbjct: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
Query: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW
Sbjct: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
Query: 361 QYYERTVTVPMY 372
QYYERTVTVPMY
Sbjct: 361 QYYERTVTVPMY 372
>gi|26051266 potassium voltage-gated channel KQT-like protein 2
isoform d [Homo sapiens]
Length = 841
Score = 759 bits (1959), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG
Sbjct: 1 MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAG 60
Query: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK
Sbjct: 61 GAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEK 120
Query: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI
Sbjct: 121 SSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASI 180
Query: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF
Sbjct: 181 AVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
Query: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI
Sbjct: 241 LCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLI 300
Query: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW
Sbjct: 301 GVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTW 360
Query: 361 QYYERTVTVPMY 372
QYYERTVTVPMY
Sbjct: 361 QYYERTVTVPMY 372
>gi|26638655 potassium voltage-gated channel KQT-like protein 4
isoform b [Homo sapiens]
Length = 641
Score = 482 bits (1240), Expect = e-136
Identities = 231/333 (69%), Positives = 273/333 (81%), Gaps = 12/333 (3%)
Query: 44 GSEAPKRGSILSKPRAGGA-------GAG-----KPPKRNAFYRKLQNFLYNVLERPRGW 91
G +P+R +L P GA G+G + + YR+LQN++YNVLERPRGW
Sbjct: 38 GGGSPRRLGLLGSPLPPGAPLPGPGSGSGSACGQRSSAAHKRYRRLQNWVYNVLERPRGW 97
Query: 92 AFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCC 151
AF+YH ++FLLVFSCLVLSV STI+E+++ + L ILE V IVVFG+EY VR+W+AGCC
Sbjct: 98 AFVYHVFIFLLVFSCLVLSVLSTIQEHQELANECLLILEFVMIVVFGLEYIVRVWSAGCC 157
Query: 152 CRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILRMIRM 211
CRYRGW+GR +FARKPFCVID +V +AS+AV+AAG+QGN+FATSALRS+RFLQILRM+RM
Sbjct: 158 CRYRGWQGRFRFARKPFCVIDFIVFVASVAVIAAGTQGNIFATSALRSMRFLQILRMVRM 217
Query: 212 DRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWG 271
DRRGGTWKLLGSVVYAHSKEL+TAWYIGFL LI ASFLVYLAEK N F +YAD+LWWG
Sbjct: 218 DRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFASFLVYLAEKDANSDFSSYADSLWWG 277
Query: 272 LITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEK 331
ITLTTIGYGDK P TW GR+LAA F L+G+SFFALPAGILGSGFALKVQEQHRQKHFEK
Sbjct: 278 TITLTTIGYGDKTPHTWLGRVLAAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEK 337
Query: 332 RRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYE 364
RR PAA LIQ+AWR Y+T++SR L +TW YY+
Sbjct: 338 RRMPAANLIQAAWRLYSTDMSRAYLTATWYYYD 370
>gi|26638653 potassium voltage-gated channel KQT-like protein 4
isoform a [Homo sapiens]
Length = 695
Score = 482 bits (1240), Expect = e-136
Identities = 231/333 (69%), Positives = 273/333 (81%), Gaps = 12/333 (3%)
Query: 44 GSEAPKRGSILSKPRAGGA-------GAG-----KPPKRNAFYRKLQNFLYNVLERPRGW 91
G +P+R +L P GA G+G + + YR+LQN++YNVLERPRGW
Sbjct: 38 GGGSPRRLGLLGSPLPPGAPLPGPGSGSGSACGQRSSAAHKRYRRLQNWVYNVLERPRGW 97
Query: 92 AFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCC 151
AF+YH ++FLLVFSCLVLSV STI+E+++ + L ILE V IVVFG+EY VR+W+AGCC
Sbjct: 98 AFVYHVFIFLLVFSCLVLSVLSTIQEHQELANECLLILEFVMIVVFGLEYIVRVWSAGCC 157
Query: 152 CRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILRMIRM 211
CRYRGW+GR +FARKPFCVID +V +AS+AV+AAG+QGN+FATSALRS+RFLQILRM+RM
Sbjct: 158 CRYRGWQGRFRFARKPFCVIDFIVFVASVAVIAAGTQGNIFATSALRSMRFLQILRMVRM 217
Query: 212 DRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWG 271
DRRGGTWKLLGSVVYAHSKEL+TAWYIGFL LI ASFLVYLAEK N F +YAD+LWWG
Sbjct: 218 DRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFASFLVYLAEKDANSDFSSYADSLWWG 277
Query: 272 LITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEK 331
ITLTTIGYGDK P TW GR+LAA F L+G+SFFALPAGILGSGFALKVQEQHRQKHFEK
Sbjct: 278 TITLTTIGYGDKTPHTWLGRVLAAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEK 337
Query: 332 RRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYE 364
RR PAA LIQ+AWR Y+T++SR L +TW YY+
Sbjct: 338 RRMPAANLIQAAWRLYSTDMSRAYLTATWYYYD 370
>gi|236462242 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 5 [Homo sapiens]
Length = 822
Score = 473 bits (1216), Expect = e-133
Identities = 240/370 (64%), Positives = 281/370 (75%), Gaps = 17/370 (4%)
Query: 34 STRDGALLIAGSEAPKRGSI---LSKPRAGGAGA-----GKPP--------KRNAFYRKL 77
+ R LL+ G+ A G L + R G GA GKP +RN YR++
Sbjct: 52 AARGDGLLLLGTRAATLGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRV 111
Query: 78 QNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVF 137
QN+LYNVLERPRGWAFIYHA+VFLLVF CL+LSVFSTI E+ K + L ILE V IVVF
Sbjct: 112 QNYLYNVLERPRGWAFIYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVF 171
Query: 138 GVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSAL 197
G+E+ +RIW+AGCCCRYRGW+GRL+FARKPFCVID +VLIASIAV++A +QGN+FATSAL
Sbjct: 172 GLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSAL 231
Query: 198 RSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGE 257
RSLRFLQILRM+RMDRRGGTWKLLGSVVYAHSKEL+TAWYIGFL LI +SFLVYL EK
Sbjct: 232 RSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDA 291
Query: 258 NDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFA 317
N F TYADALWWG ITLTTIGYGDK P TW GRLL+A F L+G+SFFALPAGILGSGFA
Sbjct: 292 NKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFA 351
Query: 318 LKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYERTVTVPMYRYRRR 377
LKVQEQHRQKHFEKRRNPAA LIQ WR YA + + +TW+ + + + + +
Sbjct: 352 LKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSI-ATWKPHLKALHTCSPTKKEQ 410
Query: 378 APATKQLFHF 387
A+ ++ F
Sbjct: 411 GEASSRIMKF 420
>gi|236462079 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 4 [Homo sapiens]
Length = 951
Score = 472 bits (1214), Expect = e-133
Identities = 238/344 (69%), Positives = 271/344 (78%), Gaps = 17/344 (4%)
Query: 34 STRDGALLIAGSEAPKRGSI---LSKPRAGGAGA-----GKPP--------KRNAFYRKL 77
+ R LL+ G+ A G L + R G GA GKP +RN YR++
Sbjct: 52 AARGDGLLLLGTRAATLGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRV 111
Query: 78 QNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVF 137
QN+LYNVLERPRGWAFIYHA+VFLLVF CL+LSVFSTI E+ K + L ILE V IVVF
Sbjct: 112 QNYLYNVLERPRGWAFIYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVF 171
Query: 138 GVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSAL 197
G+E+ +RIW+AGCCCRYRGW+GRL+FARKPFCVID +VLIASIAV++A +QGN+FATSAL
Sbjct: 172 GLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSAL 231
Query: 198 RSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGE 257
RSLRFLQILRM+RMDRRGGTWKLLGSVVYAHSKEL+TAWYIGFL LI +SFLVYL EK
Sbjct: 232 RSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDA 291
Query: 258 NDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFA 317
N F TYADALWWG ITLTTIGYGDK P TW GRLL+A F L+G+SFFALPAGILGSGFA
Sbjct: 292 NKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFA 351
Query: 318 LKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQ 361
LKVQEQHRQKHFEKRRNPAA LIQ WR YA + + +TW+
Sbjct: 352 LKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSI-ATWK 394
>gi|236461942 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 3 [Homo sapiens]
Length = 942
Score = 472 bits (1214), Expect = e-133
Identities = 238/344 (69%), Positives = 271/344 (78%), Gaps = 17/344 (4%)
Query: 34 STRDGALLIAGSEAPKRGSI---LSKPRAGGAGA-----GKPP--------KRNAFYRKL 77
+ R LL+ G+ A G L + R G GA GKP +RN YR++
Sbjct: 52 AARGDGLLLLGTRAATLGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRV 111
Query: 78 QNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVF 137
QN+LYNVLERPRGWAFIYHA+VFLLVF CL+LSVFSTI E+ K + L ILE V IVVF
Sbjct: 112 QNYLYNVLERPRGWAFIYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVF 171
Query: 138 GVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSAL 197
G+E+ +RIW+AGCCCRYRGW+GRL+FARKPFCVID +VLIASIAV++A +QGN+FATSAL
Sbjct: 172 GLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSAL 231
Query: 198 RSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGE 257
RSLRFLQILRM+RMDRRGGTWKLLGSVVYAHSKEL+TAWYIGFL LI +SFLVYL EK
Sbjct: 232 RSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDA 291
Query: 258 NDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFA 317
N F TYADALWWG ITLTTIGYGDK P TW GRLL+A F L+G+SFFALPAGILGSGFA
Sbjct: 292 NKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFA 351
Query: 318 LKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQ 361
LKVQEQHRQKHFEKRRNPAA LIQ WR YA + + +TW+
Sbjct: 352 LKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSI-ATWK 394
>gi|236461719 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 2 [Homo sapiens]
Length = 923
Score = 472 bits (1214), Expect = e-133
Identities = 238/344 (69%), Positives = 271/344 (78%), Gaps = 17/344 (4%)
Query: 34 STRDGALLIAGSEAPKRGSI---LSKPRAGGAGA-----GKPP--------KRNAFYRKL 77
+ R LL+ G+ A G L + R G GA GKP +RN YR++
Sbjct: 52 AARGDGLLLLGTRAATLGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRV 111
Query: 78 QNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVF 137
QN+LYNVLERPRGWAFIYHA+VFLLVF CL+LSVFSTI E+ K + L ILE V IVVF
Sbjct: 112 QNYLYNVLERPRGWAFIYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVF 171
Query: 138 GVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSAL 197
G+E+ +RIW+AGCCCRYRGW+GRL+FARKPFCVID +VLIASIAV++A +QGN+FATSAL
Sbjct: 172 GLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSAL 231
Query: 198 RSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGE 257
RSLRFLQILRM+RMDRRGGTWKLLGSVVYAHSKEL+TAWYIGFL LI +SFLVYL EK
Sbjct: 232 RSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDA 291
Query: 258 NDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFA 317
N F TYADALWWG ITLTTIGYGDK P TW GRLL+A F L+G+SFFALPAGILGSGFA
Sbjct: 292 NKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFA 351
Query: 318 LKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQ 361
LKVQEQHRQKHFEKRRNPAA LIQ WR YA + + +TW+
Sbjct: 352 LKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSI-ATWK 394
>gi|28373065 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 1 [Homo sapiens]
Length = 932
Score = 472 bits (1214), Expect = e-133
Identities = 238/344 (69%), Positives = 271/344 (78%), Gaps = 17/344 (4%)
Query: 34 STRDGALLIAGSEAPKRGSI---LSKPRAGGAGA-----GKPP--------KRNAFYRKL 77
+ R LL+ G+ A G L + R G GA GKP +RN YR++
Sbjct: 52 AARGDGLLLLGTRAATLGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRV 111
Query: 78 QNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVF 137
QN+LYNVLERPRGWAFIYHA+VFLLVF CL+LSVFSTI E+ K + L ILE V IVVF
Sbjct: 112 QNYLYNVLERPRGWAFIYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVF 171
Query: 138 GVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSAL 197
G+E+ +RIW+AGCCCRYRGW+GRL+FARKPFCVID +VLIASIAV++A +QGN+FATSAL
Sbjct: 172 GLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSAL 231
Query: 198 RSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGE 257
RSLRFLQILRM+RMDRRGGTWKLLGSVVYAHSKEL+TAWYIGFL LI +SFLVYL EK
Sbjct: 232 RSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDA 291
Query: 258 NDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFA 317
N F TYADALWWG ITLTTIGYGDK P TW GRLL+A F L+G+SFFALPAGILGSGFA
Sbjct: 292 NKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFA 351
Query: 318 LKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQ 361
LKVQEQHRQKHFEKRRNPAA LIQ WR YA + + +TW+
Sbjct: 352 LKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSI-ATWK 394
>gi|4758630 potassium voltage-gated channel KQT-like protein 3 [Homo
sapiens]
Length = 872
Score = 462 bits (1190), Expect = e-130
Identities = 241/398 (60%), Positives = 289/398 (72%), Gaps = 32/398 (8%)
Query: 4 KSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGS-------EAPKRGSILSK 56
+ R G+ PG + L +G G D +DG LL+ G P+ +L+K
Sbjct: 39 EERKVGLAPGDVEQVTLALG-AGAD-------KDGTLLLEGGGRDEGQRRTPQGIGLLAK 90
Query: 57 PRAGGAGAGKPPKRN-AFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTI 115
+P KRN A YR++Q +Y+ LERPRGWA +YHA VFL+V CL+L+V +T
Sbjct: 91 -----TPLSRPVKRNNAKYRRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTF 145
Query: 116 KEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMV 175
KEYE S L +LE I +FG E+ +RIWAAGCCCRY+GWRGRLKFARKP C++DI V
Sbjct: 146 KEYETVSGDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFV 205
Query: 176 LIASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTA 235
LIAS+ V+A G+QGNV ATS LRSLRFLQILRM+RMDRRGGTWKLLGS + AHSKEL+TA
Sbjct: 206 LIASVPVVAVGNQGNVLATS-LRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITA 264
Query: 236 WYIGFLCLILASFLVYLAEK--------GEN--DHFDTYADALWWGLITLTTIGYGDKYP 285
WYIGFL LIL+SFLVYL EK GE + F+TYADALWWGLITL TIGYGDK P
Sbjct: 265 WYIGFLTLILSSFLVYLVEKDVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTP 324
Query: 286 QTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWR 345
+TW GRL+AATF+LIGVSFFALPAGILGSG ALKVQEQHRQKHFEKRR PAA LIQ+AWR
Sbjct: 325 KTWEGRLIAATFSLIGVSFFALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWR 384
Query: 346 FYATNLSRTDLHSTWQYYERTVTVPMYRYRRRAPATKQ 383
+YATN +R DL +TW++YE V+ P +R + A+ Q
Sbjct: 385 YYATNPNRIDLVATWRFYESVVSFPFFRKEQLEAASSQ 422
>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 1 [Homo sapiens]
Length = 676
Score = 345 bits (885), Expect = 4e-95
Identities = 178/343 (51%), Positives = 232/343 (67%), Gaps = 12/343 (3%)
Query: 29 PGAPDSTRDGALLIAGSEAPKRGSILSKPRAGGAGAGKPPKRNAFYRKLQNFLYNVLERP 88
P P S A S+ R + PR +P +Q +YN LERP
Sbjct: 61 PAPPASPAAPAAPPVASDLGPRPPVSLDPRVSIYSTRRPVLARTH---VQGRVYNFLERP 117
Query: 89 RGW-AFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWA 147
GW F+YH VFL+V CL+ SV STI++Y + G L+ +EIV +V FG EY VR+W+
Sbjct: 118 TGWKCFVYHFAVFLIVLVCLIFSVLSTIEQYAALATGTLFWMEIVLVVFFGTEYVVRLWS 177
Query: 148 AGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILR 207
AGC +Y G GRL+FARKP +ID++V++AS+ VL GS+G VFATSA+R +RFLQILR
Sbjct: 178 AGCRSKYVGLWGRLRFARKPISIIDLIVVVASMVVLCVGSKGQVFATSAIRGIRFLQILR 237
Query: 208 MIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGEND-----HFD 262
M+ +DR+GGTW+LLGSVV+ H +EL+T YIGFL LI +S+ VYLAEK + F
Sbjct: 238 MLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDAVNESGRVEFG 297
Query: 263 TYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQE 322
+YADALWWG++T+TTIGYGDK PQTW G+ +A+ F++ +SFFALPAGILGSGFALKVQ+
Sbjct: 298 SYADALWWGVVTVTTIGYGDKVPQTWVGKTIASCFSVFAISFFALPAGILGSGFALKVQQ 357
Query: 323 QHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYER 365
+ RQKHF ++ AA LIQ+AWR YA + STW+ Y R
Sbjct: 358 KQRQKHFNRQIPAAASLIQTAWRCYA---AENPDSSTWKIYIR 397
>gi|32479525 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 2 [Homo sapiens]
Length = 549
Score = 320 bits (819), Expect = 2e-87
Identities = 156/271 (57%), Positives = 204/271 (75%), Gaps = 8/271 (2%)
Query: 100 FLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRG 159
FL+V CL+ SV STI++Y + G L+ +EIV +V FG EY VR+W+AGC +Y G G
Sbjct: 3 FLIVLVCLIFSVLSTIEQYAALATGTLFWMEIVLVVFFGTEYVVRLWSAGCRSKYVGLWG 62
Query: 160 RLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWK 219
RL+FARKP +ID++V++AS+ VL GS+G VFATSA+R +RFLQILRM+ +DR+GGTW+
Sbjct: 63 RLRFARKPISIIDLIVVVASMVVLCVGSKGQVFATSAIRGIRFLQILRMLHVDRQGGTWR 122
Query: 220 LLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGEND-----HFDTYADALWWGLIT 274
LLGSVV+ H +EL+T YIGFL LI +S+ VYLAEK + F +YADALWWG++T
Sbjct: 123 LLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDAVNESGRVEFGSYADALWWGVVT 182
Query: 275 LTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRN 334
+TTIGYGDK PQTW G+ +A+ F++ +SFFALPAGILGSGFALKVQ++ RQKHF ++
Sbjct: 183 VTTIGYGDKVPQTWVGKTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQKHFNRQIP 242
Query: 335 PAAGLIQSAWRFYATNLSRTDLHSTWQYYER 365
AA LIQ+AWR YA + STW+ Y R
Sbjct: 243 AAASLIQTAWRCYA---AENPDSSTWKIYIR 270
>gi|21217561 Shaw-related voltage-gated potassium channel protein 2
isoform KV3.2a [Homo sapiens]
Length = 613
Score = 104 bits (260), Expect = 1e-22
Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 44/292 (15%)
Query: 62 AGAGKPPKRNAFYRKLQNFLYNVLERP---RGWAFIYHAYVFLLVFS----CL------- 107
AG G P ++ +R+LQ ++ + E P R FI A +F ++ S CL
Sbjct: 196 AGLGGPDGKSGRWRRLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFN 255
Query: 108 --------VLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRG 159
V++ S + +YE ++ AL +E V +V F E+ VRI +
Sbjct: 256 IVKNKTEPVINGTSVVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSP---------N 306
Query: 160 RLKFARKPFCVIDIMVLIA---SIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGG 216
+L+F + +ID + ++ + + S+ LR +RF++ILR+ ++ R
Sbjct: 307 KLEFIKNLLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFV 366
Query: 217 TWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEK----------GENDHFDTYAD 266
++LG + A + E + L +++ + ++Y AE+ E+ F
Sbjct: 367 GLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPI 426
Query: 267 ALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFAL 318
WW ++T+TT+GYGD YPQTW+G L+ A L GV A+P ++ + F +
Sbjct: 427 GFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGM 478
>gi|21217563 Shaw-related voltage-gated potassium channel protein 2
isoform KV3.2b [Homo sapiens]
Length = 638
Score = 104 bits (260), Expect = 1e-22
Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 44/292 (15%)
Query: 62 AGAGKPPKRNAFYRKLQNFLYNVLERP---RGWAFIYHAYVFLLVFS----CL------- 107
AG G P ++ +R+LQ ++ + E P R FI A +F ++ S CL
Sbjct: 196 AGLGGPDGKSGRWRRLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFN 255
Query: 108 --------VLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRG 159
V++ S + +YE ++ AL +E V +V F E+ VRI +
Sbjct: 256 IVKNKTEPVINGTSVVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSP---------N 306
Query: 160 RLKFARKPFCVIDIMVLIA---SIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGG 216
+L+F + +ID + ++ + + S+ LR +RF++ILR+ ++ R
Sbjct: 307 KLEFIKNLLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFV 366
Query: 217 TWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEK----------GENDHFDTYAD 266
++LG + A + E + L +++ + ++Y AE+ E+ F
Sbjct: 367 GLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPI 426
Query: 267 ALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFAL 318
WW ++T+TT+GYGD YPQTW+G L+ A L GV A+P ++ + F +
Sbjct: 427 GFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGM 478
>gi|24497458 Shaw-related voltage-gated potassium channel protein 2
isoform KV3.2c [Homo sapiens]
Length = 558
Score = 104 bits (260), Expect = 1e-22
Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 44/292 (15%)
Query: 62 AGAGKPPKRNAFYRKLQNFLYNVLERP---RGWAFIYHAYVFLLVFS----CL------- 107
AG G P ++ +R+LQ ++ + E P R FI A +F ++ S CL
Sbjct: 196 AGLGGPDGKSGRWRRLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFN 255
Query: 108 --------VLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRG 159
V++ S + +YE ++ AL +E V +V F E+ VRI +
Sbjct: 256 IVKNKTEPVINGTSVVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSP---------N 306
Query: 160 RLKFARKPFCVIDIMVLIA---SIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGG 216
+L+F + +ID + ++ + + S+ LR +RF++ILR+ ++ R
Sbjct: 307 KLEFIKNLLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFV 366
Query: 217 TWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEK----------GENDHFDTYAD 266
++LG + A + E + L +++ + ++Y AE+ E+ F
Sbjct: 367 GLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPI 426
Query: 267 ALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFAL 318
WW ++T+TT+GYGD YPQTW+G L+ A L GV A+P ++ + F +
Sbjct: 427 GFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGM 478
>gi|119395748 potassium voltage-gated channel subfamily A member 1
[Homo sapiens]
Length = 495
Score = 94.7 bits (234), Expect = 1e-19
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 18/199 (9%)
Query: 127 YILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAA- 185
+I+E + I+ F E VR +A + F + IDI+ +I L
Sbjct: 222 FIVETLCIIWFSFELVVRFFACP---------SKTDFFKNIMNFIDIVAIIPYFITLGTE 272
Query: 186 -----GSQGNVFATSA--LRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYI 238
G+Q ATS LR +R +++ R+ ++ R ++LG + A +EL +
Sbjct: 273 IAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFF 332
Query: 239 GFLCLILASFLVYLAEKGEND-HFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATF 297
F+ +IL S VY AE E + HF + DA WW ++++TT+GYGD YP T G+++ +
Sbjct: 333 LFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLC 392
Query: 298 TLIGVSFFALPAGILGSGF 316
+ GV ALP ++ S F
Sbjct: 393 AIAGVLTIALPVPVIVSNF 411
>gi|88758565 potassium voltage-gated channel, shaker-related
subfamily, member 3 [Homo sapiens]
Length = 575
Score = 94.0 bits (232), Expect = 2e-19
Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 16/197 (8%)
Query: 127 YILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLA-- 184
+++E + I+ F E VR +A + F+R +IDI+ +I L
Sbjct: 296 FVVETLCIIWFSFELLVRFFACP---------SKATFSRNIMNLIDIVAIIPYFITLGTE 346
Query: 185 -AGSQGN---VFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGF 240
A QGN + + LR +R +++ R+ ++ R ++LG + A +EL + F
Sbjct: 347 LAERQGNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLF 406
Query: 241 LCLILASFLVYLAEKGE-NDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTL 299
+ +IL S VY AE + F + DA WW ++T+TT+GYGD +P T G+++ + +
Sbjct: 407 IGVILFSSAVYFAEADDPTSGFSSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAI 466
Query: 300 IGVSFFALPAGILGSGF 316
GV ALP ++ S F
Sbjct: 467 AGVLTIALPVPVIVSNF 483
>gi|4504817 potassium voltage-gated channel, shaker-related
subfamily, member 4 [Homo sapiens]
Length = 653
Score = 94.0 bits (232), Expect = 2e-19
Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 20/201 (9%)
Query: 127 YILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAA- 185
+I+E V IV F E+ VR +A + F + +IDI+ ++ L
Sbjct: 372 FIVETVCIVWFSFEFVVRCFACP---------SQALFFKNIMNIIDIVSILPYFITLGTD 422
Query: 186 ---------GSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAW 236
G Q + + LR +R +++ R+ ++ R ++LG + A +EL
Sbjct: 423 LAQQQGGGNGQQQQAMSFAILRIIRLVRVFRIFKLSRHSKGLQILGHTLRASMRELGLLI 482
Query: 237 YIGFLCLILASFLVYLAEKGE-NDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAA 295
+ F+ +IL S VY AE E HF + DA WW ++T+TT+GYGD P T G+++ +
Sbjct: 483 FFLFIGVILFSSAVYFAEADEPTTHFQSIPDAFWWAVVTMTTVGYGDMKPITVGGKIVGS 542
Query: 296 TFTLIGVSFFALPAGILGSGF 316
+ GV ALP ++ S F
Sbjct: 543 LCAIAGVLTIALPVPVIVSNF 563
>gi|4826784 potassium voltage-gated channel, Shab-related subfamily,
member 1 [Homo sapiens]
Length = 858
Score = 92.4 bits (228), Expect = 6e-19
Identities = 73/268 (27%), Positives = 132/268 (49%), Gaps = 24/268 (8%)
Query: 81 LYNVLERPRGWA---FIYHAYVFLLVFSCLVLSV-----FSTIKEYEKSSEGA-LYILEI 131
L+++LE+P + + +V S + LS+ ++ E+ +S++ L +E
Sbjct: 175 LWDLLEKPNSSVAAKILAIISIMFIVLSTIALSLNTLPELQSLDEFGQSTDNPQLAHVEA 234
Query: 132 VTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIAS-IAVLAAGSQGN 190
V I F +EY +R ++ + W KF + P ID++ ++ + + S +
Sbjct: 235 VCIAWFTMEYLLRFLSSP-----KKW----KFFKGPLNAIDLLAILPYYVTIFLTESNKS 285
Query: 191 VFATSALRSL----RFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILA 246
V +R + R ++ILR++++ R + LG + EL + +++
Sbjct: 286 VLQFQNVRRVVQIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIF 345
Query: 247 SFLVYLAEKGEND-HFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFF 305
S LV+ AEK E+D F + + WW IT+TT+GYGD YP+T G+++ + GV
Sbjct: 346 SSLVFFAEKDEDDTKFKSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVI 405
Query: 306 ALPAGILGSGFALKVQEQHRQKHFEKRR 333
ALP I+ + F+ +EQ RQ+ KRR
Sbjct: 406 ALPIPIIVNNFSEFYKEQKRQEKAIKRR 433
>gi|27436974 potassium voltage-gated channel, Shab-related
subfamily, member 2 [Homo sapiens]
Length = 911
Score = 91.7 bits (226), Expect = 1e-18
Identities = 73/269 (27%), Positives = 131/269 (48%), Gaps = 26/269 (9%)
Query: 81 LYNVLERPRGWA---FIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGA-------LYILE 130
L+++LE+P + + +V S + LS+ +T+ E +++ E L +E
Sbjct: 179 LWDLLEKPNSSVAAKILAIVSILFIVLSTIALSL-NTLPELQETDEFGQLNDNRQLAHVE 237
Query: 131 IVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIAS-IAVLAAGSQG 189
V I F +EY +R ++ + KF + P VID++ ++ + + S
Sbjct: 238 AVCIAWFTMEYLLRFLSSP---------NKWKFFKGPLNVIDLLAILPYYVTIFLTESNK 288
Query: 190 NVFATSALRSL----RFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLIL 245
+V +R + R ++ILR++++ R + LG + EL + +++
Sbjct: 289 SVLQFQNVRRVVQIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMI 348
Query: 246 ASFLVYLAEKGEN-DHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSF 304
S LV+ AEK E+ F + + WW IT+TT+GYGD YP+T G+++ + GV
Sbjct: 349 FSSLVFFAEKDEDATKFTSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLV 408
Query: 305 FALPAGILGSGFALKVQEQHRQKHFEKRR 333
ALP I+ + F+ +EQ RQ+ KRR
Sbjct: 409 IALPIPIIVNNFSEFYKEQKRQEKAIKRR 437
>gi|4826786 Shaw-related voltage-gated potassium channel protein 1
isoform B [Homo sapiens]
Length = 511
Score = 90.9 bits (224), Expect = 2e-18
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 22/213 (10%)
Query: 119 EKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIA 178
E +E L +E V +V F E+ +R+ +++F + +ID + ++
Sbjct: 238 EAETEAFLTYIEGVCVVWFTFEFLMRVIFCP---------NKVEFIKNSLNIIDFVAILP 288
Query: 179 ---SIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTA 235
+ + S+ LR +RF++ILR+ ++ R ++LG + A + E +
Sbjct: 289 FYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLL 348
Query: 236 WYIGFLCLILASFLVYLAEK----------GENDHFDTYADALWWGLITLTTIGYGDKYP 285
L +++ + ++Y AE+ E+ HF WW ++T+TT+GYGD YP
Sbjct: 349 IIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYP 408
Query: 286 QTWNGRLLAATFTLIGVSFFALPAGILGSGFAL 318
QTW+G L+ A L GV A+P ++ + F +
Sbjct: 409 QTWSGMLVGALCALAGVLTIAMPVPVIVNNFGM 441
>gi|163792201 Shaw-related voltage-gated potassium channel protein 1
isoform A [Homo sapiens]
Length = 585
Score = 90.9 bits (224), Expect = 2e-18
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 22/213 (10%)
Query: 119 EKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIA 178
E +E L +E V +V F E+ +R+ +++F + +ID + ++
Sbjct: 238 EAETEAFLTYIEGVCVVWFTFEFLMRVIFCP---------NKVEFIKNSLNIIDFVAILP 288
Query: 179 ---SIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTA 235
+ + S+ LR +RF++ILR+ ++ R ++LG + A + E +
Sbjct: 289 FYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLL 348
Query: 236 WYIGFLCLILASFLVYLAEK----------GENDHFDTYADALWWGLITLTTIGYGDKYP 285
L +++ + ++Y AE+ E+ HF WW ++T+TT+GYGD YP
Sbjct: 349 IIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYP 408
Query: 286 QTWNGRLLAATFTLIGVSFFALPAGILGSGFAL 318
QTW+G L+ A L GV A+P ++ + F +
Sbjct: 409 QTWSGMLVGALCALAGVLTIAMPVPVIVNNFGM 441
>gi|88758576 Shaw-related voltage-gated potassium channel protein 4
isoform c [Homo sapiens]
Length = 626
Score = 89.7 bits (221), Expect = 4e-18
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 119 EKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIA 178
E +E L +E V ++ F +E+ VRI CC L F + +ID + ++
Sbjct: 274 EVETEPILTYIEGVCVLWFTLEFLVRI----VCCP-----DTLDFVKNLLNIIDFVAILP 324
Query: 179 ---SIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTA 235
+ + S+ LR +RF++ILR+ ++ R ++LG + A + E +
Sbjct: 325 FYLEVGLSGLSSKAARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLL 384
Query: 236 WYIGFLCLILASFLVYLAEK--------GENDH--FDTYADALWWGLITLTTIGYGDKYP 285
L +++ + ++Y AE+ NDH F WW ++T+TT+GYGD YP
Sbjct: 385 IIFLALGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYP 444
Query: 286 QTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRR 333
+TW+G L+ A L GV A+P ++ + F + ++ K+R
Sbjct: 445 KTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKR 492
>gi|24497462 Shaw-related voltage-gated potassium channel protein 4
isoform a [Homo sapiens]
Length = 635
Score = 89.7 bits (221), Expect = 4e-18
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 119 EKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIA 178
E +E L +E V ++ F +E+ VRI CC L F + +ID + ++
Sbjct: 274 EVETEPILTYIEGVCVLWFTLEFLVRI----VCCP-----DTLDFVKNLLNIIDFVAILP 324
Query: 179 ---SIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTA 235
+ + S+ LR +RF++ILR+ ++ R ++LG + A + E +
Sbjct: 325 FYLEVGLSGLSSKAARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLL 384
Query: 236 WYIGFLCLILASFLVYLAEK--------GENDH--FDTYADALWWGLITLTTIGYGDKYP 285
L +++ + ++Y AE+ NDH F WW ++T+TT+GYGD YP
Sbjct: 385 IIFLALGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYP 444
Query: 286 QTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRR 333
+TW+G L+ A L GV A+P ++ + F + ++ K+R
Sbjct: 445 KTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKR 492
>gi|24497464 Shaw-related voltage-gated potassium channel protein 4
isoform b [Homo sapiens]
Length = 582
Score = 89.7 bits (221), Expect = 4e-18
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 119 EKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIA 178
E +E L +E V ++ F +E+ VRI CC L F + +ID + ++
Sbjct: 274 EVETEPILTYIEGVCVLWFTLEFLVRI----VCCP-----DTLDFVKNLLNIIDFVAILP 324
Query: 179 ---SIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTA 235
+ + S+ LR +RF++ILR+ ++ R ++LG + A + E +
Sbjct: 325 FYLEVGLSGLSSKAARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLL 384
Query: 236 WYIGFLCLILASFLVYLAEK--------GENDH--FDTYADALWWGLITLTTIGYGDKYP 285
L +++ + ++Y AE+ NDH F WW ++T+TT+GYGD YP
Sbjct: 385 IIFLALGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYP 444
Query: 286 QTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRR 333
+TW+G L+ A L GV A+P ++ + F + ++ K+R
Sbjct: 445 KTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKR 492
>gi|4504821 potassium voltage-gated channel, shaker-related
subfamily, member 6 [Homo sapiens]
Length = 529
Score = 89.0 bits (219), Expect = 7e-18
Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 127 YILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVL--- 183
+++E + IV F E VR A + F R +ID++ + L
Sbjct: 264 FLVETLCIVWFTFELLVRFSACP---------SKPAFFRNIMNIIDLVAIFPYFITLGTE 314
Query: 184 ---------AAGSQGN----VFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSK 230
A+G G + + LR +R +++ R+ ++ R ++LG + A +
Sbjct: 315 LVQQQEQQPASGGGGQNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASMR 374
Query: 231 ELVTAWYIGFLCLILASFLVYLAEKGENDH-FDTYADALWWGLITLTTIGYGDKYPQTWN 289
EL + F+ +IL S VY AE ++D F + DA WW ++T+TT+GYGD YP T
Sbjct: 375 ELGLLIFFLFIGVILFSSAVYFAEADDDDSLFPSIPDAFWWAVVTMTTVGYGDMYPMTVG 434
Query: 290 GRLLAATFTLIGVSFFALPAGILGSGF 316
G+++ + + GV ALP ++ S F
Sbjct: 435 GKIVGSLCAIAGVLTIALPVPVIVSNF 461
>gi|4826782 potassium voltage-gated channel, shaker-related
subfamily, member 2 [Homo sapiens]
Length = 499
Score = 89.0 bits (219), Expect = 7e-18
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 19/200 (9%)
Query: 127 YILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAA- 185
+I+E + I+ F E+ VR +A + F +IDI+ +I L
Sbjct: 223 FIVETLCIIWFSFEFLVRFFACP---------SKAGFFTNIMNIIDIVAIIPYFITLGTE 273
Query: 186 -------GSQGN-VFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWY 237
QG + + LR +R +++ R+ ++ R ++LG + A +EL +
Sbjct: 274 LAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIF 333
Query: 238 IGFLCLILASFLVYLAEKGEND-HFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAAT 296
F+ +IL S VY AE E + F + DA WW ++++TT+GYGD P T G+++ +
Sbjct: 334 FLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSL 393
Query: 297 FTLIGVSFFALPAGILGSGF 316
+ GV ALP ++ S F
Sbjct: 394 CAIAGVLTIALPVPVIVSNF 413
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,279,053
Number of Sequences: 37866
Number of extensions: 680949
Number of successful extensions: 2407
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2206
Number of HSP's gapped (non-prelim): 175
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.