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Search of human proteins with 254039592
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|254039592 nuclear RNA export factor 5 [Homo sapiens]
(365 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|254039592 nuclear RNA export factor 5 [Homo sapiens] 744 0.0
gi|153791282 nuclear RNA export factor 2B [Homo sapiens] 610 e-175
gi|14277694 nuclear RNA export factor 2 [Homo sapiens] 610 e-175
gi|13430854 nuclear RNA export factor 2 [Homo sapiens] 610 e-175
gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens] 405 e-113
gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens] 302 4e-82
gi|11545757 nuclear RNA export factor 3 [Homo sapiens] 292 3e-79
gi|4826651 hypothetical protein LOC755 [Homo sapiens] 40 0.003
gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isofo... 37 0.028
gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isofor... 37 0.028
gi|56118210 neurotrophic tyrosine kinase, receptor, type 1 isofo... 37 0.028
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 36 0.062
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 36 0.062
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 36 0.062
gi|24308207 leucine rich repeat containing 47 [Homo sapiens] 35 0.14
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso... 35 0.14
gi|55956902 mitogen-activated protein kinase kinase kinase 4 iso... 35 0.14
gi|7019381 fibronectin leucine rich transmembrane protein 2 [Hom... 34 0.24
gi|4826876 osteomodulin [Homo sapiens] 34 0.24
gi|164607156 axonemal dynein light chain 1 [Homo sapiens] 33 0.53
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 33 0.53
gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens] 32 0.69
gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens] 32 0.69
gi|66472382 nischarin [Homo sapiens] 32 0.69
gi|20302168 toll-like receptor 8 [Homo sapiens] 32 0.90
gi|4507531 toll-like receptor 3 [Homo sapiens] 32 0.90
gi|11321571 slit homolog 3 [Homo sapiens] 32 0.90
gi|5901992 keratocan [Homo sapiens] 32 0.90
gi|42544233 leucine rich repeat neuronal 2 [Homo sapiens] 32 0.90
gi|42544231 leucine rich repeat neuronal 2 [Homo sapiens] 32 0.90
>gi|254039592 nuclear RNA export factor 5 [Homo sapiens]
Length = 365
Score = 744 bits (1920), Expect = 0.0
Identities = 365/365 (100%), Positives = 365/365 (100%)
Query: 1 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60
MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA
Sbjct: 1 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60
Query: 61 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120
SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA
Sbjct: 61 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120
Query: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180
LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI
Sbjct: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180
Query: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240
TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP
Sbjct: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240
Query: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQSNLCKYFKDSRNI 300
KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQSNLCKYFKDSRNI
Sbjct: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQSNLCKYFKDSRNI 300
Query: 301 KILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVDMWYQTVNTCFLPRAGPESQ 360
KILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVDMWYQTVNTCFLPRAGPESQ
Sbjct: 301 KILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVDMWYQTVNTCFLPRAGPESQ 360
Query: 361 SLRPL 365
SLRPL
Sbjct: 361 SLRPL 365
>gi|153791282 nuclear RNA export factor 2B [Homo sapiens]
Length = 626
Score = 610 bits (1574), Expect = e-175
Identities = 314/382 (82%), Positives = 327/382 (85%), Gaps = 37/382 (9%)
Query: 1 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60
M +NTQD R WFKVTIPYGIKYDKAWLMNSIQS+CS FTPVDFHY+RNRACFFVQ A
Sbjct: 112 MSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDA 171
Query: 61 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120
SAASALKDVSYKIYDDENQKICIFV+H TAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA
Sbjct: 172 SAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 231
Query: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180
LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI ERNFPELLSLNLCNNKLYQLDGLSDI
Sbjct: 232 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI 291
Query: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240
TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP
Sbjct: 292 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 351
Query: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ------------- 287
KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ
Sbjct: 352 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGL 411
Query: 288 -----------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDS 324
S+LCKYF+DSRN+K LKDPYL+ +LL+ TK VDS
Sbjct: 412 LGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTK-RDIVDS 470
Query: 325 LSALPETQHDFTSILVDMWYQT 346
LSALP+TQHD +SILVD+W QT
Sbjct: 471 LSALPKTQHDLSSILVDVWCQT 492
>gi|14277694 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 610 bits (1574), Expect = e-175
Identities = 314/382 (82%), Positives = 327/382 (85%), Gaps = 37/382 (9%)
Query: 1 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60
M +NTQD R WFKVTIPYGIKYDKAWLMNSIQS+CS FTPVDFHY+RNRACFFVQ A
Sbjct: 112 MSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDA 171
Query: 61 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120
SAASALKDVSYKIYDDENQKICIFV+H TAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA
Sbjct: 172 SAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 231
Query: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180
LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI ERNFPELLSLNLCNNKLYQLDGLSDI
Sbjct: 232 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI 291
Query: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240
TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP
Sbjct: 292 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 351
Query: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ------------- 287
KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ
Sbjct: 352 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGL 411
Query: 288 -----------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDS 324
S+LCKYF+DSRN+K LKDPYL+ +LL+ TK VDS
Sbjct: 412 LGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTK-RDIVDS 470
Query: 325 LSALPETQHDFTSILVDMWYQT 346
LSALP+TQHD +SILVD+W QT
Sbjct: 471 LSALPKTQHDLSSILVDVWCQT 492
>gi|13430854 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 610 bits (1574), Expect = e-175
Identities = 314/382 (82%), Positives = 327/382 (85%), Gaps = 37/382 (9%)
Query: 1 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60
M +NTQD R WFKVTIPYGIKYDKAWLMNSIQS+CS FTPVDFHY+RNRACFFVQ A
Sbjct: 112 MSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDA 171
Query: 61 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120
SAASALKDVSYKIYDDENQKICIFV+H TAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA
Sbjct: 172 SAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 231
Query: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180
LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI ERNFPELLSLNLCNNKLYQLDGLSDI
Sbjct: 232 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI 291
Query: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240
TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP
Sbjct: 292 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 351
Query: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ------------- 287
KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ
Sbjct: 352 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGL 411
Query: 288 -----------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDS 324
S+LCKYF+DSRN+K LKDPYL+ +LL+ TK VDS
Sbjct: 412 LGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTK-RDIVDS 470
Query: 325 LSALPETQHDFTSILVDMWYQT 346
LSALP+TQHD +SILVD+W QT
Sbjct: 471 LSALPKTQHDLSSILVDVWCQT 492
>gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]
Length = 619
Score = 405 bits (1040), Expect = e-113
Identities = 215/402 (53%), Positives = 272/402 (67%), Gaps = 44/402 (10%)
Query: 5 TQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVASAAS 64
+QD + WFK+TIPYG KYDKAWL++ IQS CSVPFTP++FHY RA FFV+ AS AS
Sbjct: 111 SQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTAS 170
Query: 65 ALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQ 124
ALK V+YKI D EN++I I ++ P+++ N+LKP Q+E LKL M+KRY+ SQQALDL+
Sbjct: 171 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLK 230
Query: 125 NLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKA 184
LR DPDL+ ++ID++LNRR+CMAATL+I E N PELLSLNL NN+LY+LD +S I +KA
Sbjct: 231 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 290
Query: 185 PKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLR 244
P +K LNLS N+L+S EL K+KGLKLEELWL+GN LC TF DQS Y+SAIR+ FPKLLR
Sbjct: 291 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLR 350
Query: 245 LDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ----------------- 287
LDG EL P+ D+++ T+ PCK ++ G+E LK LVL FLQQ
Sbjct: 351 LDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAY 410
Query: 288 -------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDSLSAL 328
S+L +YFKDSRN+K LKDP L+ +LLKHT+ V L+ L
Sbjct: 411 HDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRL-NVVAFLNEL 469
Query: 329 PETQHDFTSILVDMWYQT-------VNTCFLPRAGPESQSLR 363
P+TQHD S +VD+ QT VN F G SLR
Sbjct: 470 PKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLR 511
>gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]
Length = 356
Score = 302 bits (773), Expect = 4e-82
Identities = 144/234 (61%), Positives = 184/234 (78%)
Query: 5 TQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVASAAS 64
+QD + WFK+TIPYG KYDKAWL++ IQS CSVPFTP++FHY RA FFV+ AS AS
Sbjct: 111 SQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTAS 170
Query: 65 ALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQ 124
ALK V+YKI D EN++I I ++ P+++ N+LKP Q+E LKL M+KRY+ SQQALDL+
Sbjct: 171 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLK 230
Query: 125 NLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKA 184
LR DPDL+ ++ID++LNRR+CMAATL+I E N PELLSLNL NN+LY+LD +S I +KA
Sbjct: 231 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 290
Query: 185 PKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDC 238
P +K LNLS N+L+S EL K+KGLKLEELWL+GN LC TF DQS Y+ ++ C
Sbjct: 291 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVAC 344
>gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
Length = 531
Score = 292 bits (748), Expect = 3e-79
Identities = 164/382 (42%), Positives = 224/382 (58%), Gaps = 73/382 (19%)
Query: 1 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60
M N D + WFK+T+P+GIKY++ WL+N IQ+ CSVPF PV+FHY A FFV+ A
Sbjct: 101 MEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA 160
Query: 61 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120
S A ALK+VS KI+D++N+KI IFV+ P+ V +LK ++E +KL MN++ +VSQ+A
Sbjct: 161 SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQEA 220
Query: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180
LD+Q L F PD++ RD + N R CMAA+L + E N P ++
Sbjct: 221 LDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVM------------------ 262
Query: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240
SA E+ K KG++ E + +P+C+TFSD S+ +++I + FP
Sbjct: 263 ------------------SAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFP 304
Query: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ------------- 287
KLL LDG++ + ++ + + CK +F GSE LK+LVLQFLQQ
Sbjct: 305 KLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGL 364
Query: 288 -----------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDS 324
S+ CK+FKDSRNIKILKDPYL+ +LLKHTK VDS
Sbjct: 365 LSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLD-IVDS 423
Query: 325 LSALPETQHDFTSILVDMWYQT 346
LSALP+TQHD +S LVDMWYQT
Sbjct: 424 LSALPKTQHDLSSFLVDMWYQT 445
>gi|4826651 hypothetical protein LOC755 [Homo sapiens]
Length = 256
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 141 LNRRNCMAATLKITE--RNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE 198
+ + NC + L + P L + L N + L+ +S + ++ L L +N++
Sbjct: 20 VRKLNCWGSRLTDISICQEMPSLEVITLSVNSISTLEPVS----RCQRLSELYLRRNRIP 75
Query: 199 SAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELS 251
S EL +KGL +L LWL NP C T Y + P+L +LD + ++
Sbjct: 76 SLAELFYLKGLPRLRVLWLAENPCCGT--SPHRYRMTVLRTLPRLQKLDNQAVT 127
>gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isoform
1 [Homo sapiens]
Length = 790
Score = 37.0 bits (84), Expect = 0.028
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 185 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 223
P++ LNLS N LES +W+ V+GL L+EL L GNPL CS
Sbjct: 115 PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 153
>gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isoform 2
[Homo sapiens]
Length = 796
Score = 37.0 bits (84), Expect = 0.028
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 185 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 223
P++ LNLS N LES +W+ V+GL L+EL L GNPL CS
Sbjct: 115 PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 153
>gi|56118210 neurotrophic tyrosine kinase, receptor, type 1 isoform
3 [Homo sapiens]
Length = 760
Score = 37.0 bits (84), Expect = 0.028
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 185 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 223
P++ LNLS N LES +W+ V+GL L+EL L GNPL CS
Sbjct: 85 PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 123
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 35.8 bits (81), Expect = 0.062
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 159 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLK-LEELWLE 217
P+L L L N+++ GL + EK P + LNLS NKL+ L +K L+ L+ L L
Sbjct: 64 PKLKKLELSENRIF--GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 121
Query: 218 GNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDS 260
C ++ + Y ++ P+L LDG + D D+
Sbjct: 122 N---CEV-TNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDA 160
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 35.8 bits (81), Expect = 0.062
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 143 RRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI-------------------TEK 183
R N + +TL I N P+L +L L N L +++GL D+ + +
Sbjct: 187 RGNQLESTLGI---NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSRE 243
Query: 184 APKVKTLNLSKNKLESAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKL 242
++ LNL N + + EL K++ L KL L L NP +D+++Y P L
Sbjct: 244 MKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPC----TDETSYRQEALVQMPYL 299
Query: 243 LRLD 246
RLD
Sbjct: 300 ERLD 303
Score = 29.6 bits (65), Expect = 4.4
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 159 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEG 218
P L + N++ +G+S P+++TLNL N + L K + L + L G
Sbjct: 134 PYLQIASFAYNQITDTEGISH-----PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRG 188
Query: 219 NPLCST 224
N L ST
Sbjct: 189 NQLEST 194
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 35.8 bits (81), Expect = 0.062
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 143 RRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI-------------------TEK 183
R N + +TL I N P+L +L L N L +++GL D+ + +
Sbjct: 187 RGNQLESTLGI---NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSRE 243
Query: 184 APKVKTLNLSKNKLESAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKL 242
++ LNL N + + EL K++ L KL L L NP +D+++Y P L
Sbjct: 244 MKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPC----TDETSYRQEALVQMPYL 299
Query: 243 LRLD 246
RLD
Sbjct: 300 ERLD 303
Score = 29.6 bits (65), Expect = 4.4
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 159 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEG 218
P L + N++ +G+S P+++TLNL N + L K + L + L G
Sbjct: 134 PYLQIASFAYNQITDTEGISH-----PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRG 188
Query: 219 NPLCST 224
N L ST
Sbjct: 189 NQLEST 194
>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
Length = 583
Score = 34.7 bits (78), Expect = 0.14
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 159 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLES 199
P+L SLNL N+L +L +D+ AP++++LNL+ N L+S
Sbjct: 129 PQLQSLNLSGNRLRELP--ADLARCAPRLQSLNLTGNCLDS 167
>gi|55956904 mitogen-activated protein kinase kinase kinase 4
isoform a [Homo sapiens]
Length = 1608
Score = 34.7 bits (78), Expect = 0.14
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 232 VSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQSNLC 291
++ I +C LRL+ R P ++ I + ++ CKE G +K QF+ Q L
Sbjct: 624 LNVIHECLK--LRLEQRPAGEPSLLSI--KQLVRECKEVLKGGLLMKQYY-QFMLQEVLE 678
Query: 292 KYFKDSRNIKILKDPYLQRKLLKHTKCPRN-VDSLSALPETQHDFTSILVDMWYQTVNTC 350
K NI ++ L + L+ + R+ + L LP+ H ++L + W T
Sbjct: 679 DLEKPDCNIDAFEED-LHKMLMVYFDYMRSWIQMLQQLPQASHSLKNLLEEEWNFTKEIT 737
Query: 351 FLPRAG 356
R G
Sbjct: 738 HYIRGG 743
>gi|55956902 mitogen-activated protein kinase kinase kinase 4
isoform b [Homo sapiens]
Length = 1558
Score = 34.7 bits (78), Expect = 0.14
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 232 VSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQSNLC 291
++ I +C LRL+ R P ++ I + ++ CKE G +K QF+ Q L
Sbjct: 624 LNVIHECLK--LRLEQRPAGEPSLLSI--KQLVRECKEVLKGGLLMKQYY-QFMLQEVLE 678
Query: 292 KYFKDSRNIKILKDPYLQRKLLKHTKCPRN-VDSLSALPETQHDFTSILVDMWYQTVNTC 350
K NI ++ L + L+ + R+ + L LP+ H ++L + W T
Sbjct: 679 DLEKPDCNIDAFEED-LHKMLMVYFDYMRSWIQMLQQLPQASHSLKNLLEEEWNFTKEIT 737
Query: 351 FLPRAG 356
R G
Sbjct: 738 HYIRGG 743
>gi|7019381 fibronectin leucine rich transmembrane protein 2 [Homo
sapiens]
Length = 660
Score = 33.9 bits (76), Expect = 0.24
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 152 KITERNFP-ELLSLNLCNNKLYQLDGLSDITEKAPK-VKTLNLSKNKLESAWELGKVKGL 209
+I FP EL ++ + + L + PK V+ L+L +N +++ + L
Sbjct: 74 QINNAGFPAELHNVQSVHTVYLYGNQLDEFPMNLPKNVRVLHLQENNIQTISRAALAQLL 133
Query: 210 KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSA-PVIVDIDSSE 262
KLEEL L+ N + + + A+ AI KLL L LS+ PV + +D E
Sbjct: 134 KLEELHLDDNSISTVGVEDGAFREAIS---LKLLFLSKNHLSSVPVGLPVDLQE 184
>gi|4826876 osteomodulin [Homo sapiens]
Length = 421
Score = 33.9 bits (76), Expect = 0.24
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 115 NVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQL 174
N+ Q L+ NL P + + ++ +L N ++ L L+LC N L+
Sbjct: 142 NLLQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDS 201
Query: 175 DGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGL--KLEELWLEGNPLCS---TFSDQS 229
I K K+ LNL N+LES GL L L LE N + S + D+
Sbjct: 202 LLKDKIFAKMEKLMQLNLCSNRLES-----MPPGLPSSLMYLSLENNSISSIPEKYFDKL 256
Query: 230 AYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQ 283
+ +R KL + + P IV++ S K+ F L+HL LQ
Sbjct: 257 PKLHTLRMSHNKLQDIPYNIFNLPNIVEL--SVGHNKLKQAFYIPRNLEHLYLQ 308
>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
Length = 190
Score = 32.7 bits (73), Expect = 0.53
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 186 KVKTLNLSKNKLESAWELGKVKGLK-LEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLR 244
K+K L +S N ++ E K+ L LE+L GNPL S ++ ++ PKL +
Sbjct: 116 KLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKK 175
Query: 245 LDG 247
LDG
Sbjct: 176 LDG 178
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 32.7 bits (73), Expect = 0.53
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 118 QQALDLQNLRFDPDLMGR--DIDIILNRRNCMAATLKITE----RNFPELLSLNLCNNKL 171
++ + L+ L +L+G+ +D +L R + KI++ N L LNL N++
Sbjct: 122 EKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEI 181
Query: 172 YQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLK-LEELWLEGNPL 221
+ + +K ++ LNL NK+ S ++ K+K L+ L L L NP+
Sbjct: 182 EHIPVW--LGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPV 230
>gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens]
Length = 1227
Score = 32.3 bits (72), Expect = 0.69
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 114 YNVSQQALDLQNLRFDPDLMGRDIDIILNRR--NCMAATLKITERNFPELL 162
Y VS A D+Q L+ D+ +D+ ++++ N +A TLK+ R PE L
Sbjct: 1045 YRVSGVATDIQALKAAFDVNNKDVSVMMSEMDVNAIAGTLKLYFRELPEPL 1095
>gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens]
Length = 1271
Score = 32.3 bits (72), Expect = 0.69
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 114 YNVSQQALDLQNLRFDPDLMGRDIDIILNRR--NCMAATLKITERNFPELL 162
Y VS A D+Q L+ D+ +D+ ++++ N +A TLK+ R PE L
Sbjct: 1089 YRVSGVATDIQALKAAFDVNNKDVSVMMSEMDVNAIAGTLKLYFRELPEPL 1139
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 32.3 bits (72), Expect = 0.69
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 161 LLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGL 209
L+ L+L NKL L+GL K +KTLNL+ N LES L K+ L
Sbjct: 334 LVHLDLSYNKLSSLEGLHT---KLGNIKTLNLAGNLLESLSGLHKLYSL 379
>gi|20302168 toll-like receptor 8 [Homo sapiens]
Length = 1041
Score = 32.0 bits (71), Expect = 0.90
Identities = 61/244 (25%), Positives = 99/244 (40%), Gaps = 31/244 (12%)
Query: 100 PGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFP 159
P Q E L + + A L F + +D+ NR + A+ +TE +
Sbjct: 498 PNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASA-LTELSDL 556
Query: 160 ELLSLNLCNNKLYQLDGLS---DITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWL 216
E+L L+ N+ +++ G++ + + +K LNLS N + + + ++ L EL
Sbjct: 557 EVLDLSY-NSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVF 615
Query: 217 EGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSET 276
GN L ++D +I L RLD LS + I + + N S T
Sbjct: 616 SGNRLDILWNDDDNRYISIFKGLKNLTRLD---LSLNRLKHIPNEAFL-----NLPASLT 667
Query: 277 LKHLVLQFLQQSNLCKYFKDSRNIKILKD-PYLQRKLLKHTKCPRNVDSLSALPETQHDF 335
H+ N+ K+F N +L+ P L+ L+ K DSLS DF
Sbjct: 668 ELHI------NDNMLKFF----NWTLLQQFPRLELLDLRGNKLLFLTDSLS-------DF 710
Query: 336 TSIL 339
TS L
Sbjct: 711 TSSL 714
>gi|4507531 toll-like receptor 3 [Homo sapiens]
Length = 904
Score = 32.0 bits (71), Expect = 0.90
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 105 MLKLTMNKRYNVSQQALDLQNLRFD--PDLMGRDIDIILNRRNCMAATLKITERNFPELL 162
ML + + VS + D +L+ PD + +I ++ N + + +L
Sbjct: 19 MLCASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLT 78
Query: 163 SLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPL 221
SL++ N + +L+ ++ +K P +K LNL N+L + L EL L N +
Sbjct: 79 SLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 135
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 32.0 bits (71), Expect = 0.90
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 145 NCMAATLKITERNFPELLS-LNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWEL 203
+C L + PE ++ L L +N++ L+ + I +K P ++ +NLS NK++ E
Sbjct: 517 DCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEA-TGIFKKLPNLRKINLSNNKIKEVREG 575
Query: 204 GKVKGLKLEELWLEGNPL 221
++EL L GN L
Sbjct: 576 AFDGAASVQELMLTGNQL 593
>gi|5901992 keratocan [Homo sapiens]
Length = 352
Score = 32.0 bits (71), Expect = 0.90
Identities = 53/200 (26%), Positives = 74/200 (37%), Gaps = 49/200 (24%)
Query: 100 PGQMEMLKLTMNKRYNVSQQA---------LDLQNLRFDPDLMGRDIDIILNRRNCMAAT 150
P +E L+L NK + Q LDLQN + + RD +N M
Sbjct: 141 PRSLEQLQLARNKVSRIPQGTFSNLENLTLLDLQNNKLVDNAFQRDT--FKGLKNLMQLN 198
Query: 151 L-KITERNFPELLSLN-----LCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE------ 198
+ K RN P L N L NN + + + PKV L L+ NKL
Sbjct: 199 MAKNALRNMPPRLPANTMQLFLDNNSIEGIP--ENYFNVIPKVAFLRLNHNKLSDEGLPS 256
Query: 199 -------------SAWELGKVKGLK--LEELWLEGNPL----CSTFSDQSAYVSAIRDCF 239
S +L KV + L+ L L+ N + S + + A RD F
Sbjct: 257 RGFDVSSILDLQLSHNQLTKVPRISAHLQHLHLDHNKIKSVNVSVICPSPSMLPAERDSF 316
Query: 240 P-----KLLRLDGRELSAPV 254
+ LRLDG E+ P+
Sbjct: 317 SYGPHLRYLRLDGNEIKPPI 336
>gi|42544233 leucine rich repeat neuronal 2 [Homo sapiens]
Length = 713
Score = 32.0 bits (71), Expect = 0.90
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 141 LNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKA----PKVKTLNLSKNK 196
LN + + K N PEL L++ NN LS I +A P+++TL L+ N
Sbjct: 292 LNNMEELVSIDKFALVNLPELTKLDITNN-----PRLSFIHPRAFHHLPQMETLMLNNNA 346
Query: 197 LESAWELGKVKGL-KLEELWLEGNPL 221
L SA V+ L L+E+ L GNP+
Sbjct: 347 L-SALHQQTVESLPNLQEVGLHGNPI 371
>gi|42544231 leucine rich repeat neuronal 2 [Homo sapiens]
Length = 713
Score = 32.0 bits (71), Expect = 0.90
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 141 LNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKA----PKVKTLNLSKNK 196
LN + + K N PEL L++ NN LS I +A P+++TL L+ N
Sbjct: 292 LNNMEELVSIDKFALVNLPELTKLDITNN-----PRLSFIHPRAFHHLPQMETLMLNNNA 346
Query: 197 LESAWELGKVKGL-KLEELWLEGNPL 221
L SA V+ L L+E+ L GNP+
Sbjct: 347 L-SALHQQTVESLPNLQEVGLHGNPI 371
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,363,836
Number of Sequences: 37866
Number of extensions: 550312
Number of successful extensions: 1313
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 82
length of query: 365
length of database: 18,247,518
effective HSP length: 104
effective length of query: 261
effective length of database: 14,309,454
effective search space: 3734767494
effective search space used: 3734767494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.