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Search of human proteins with 24497612
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497612 ubiquitin associated and SH3 domain containing, B
[Homo sapiens]
(649 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497612 ubiquitin associated and SH3 domain containing, B [H... 1343 0.0
gi|49640014 ubiquitin associated and SH3 domain containing, A sh... 574 e-163
gi|9507221 ubiquitin associated and SH3 domain containing, A lon... 556 e-158
gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3 ... 130 4e-30
gi|21361517 UBX domain protein 1 [Homo sapiens] 65 3e-10
gi|5453758 nebulette sarcomeric isoform [Homo sapiens] 49 1e-05
gi|47087157 nebulette non-muscle isoform [Homo sapiens] 49 1e-05
gi|78000171 sorbin and SH3 domain containing 1 isoform 7 [Homo s... 49 2e-05
gi|78000169 sorbin and SH3 domain containing 1 isoform 6 [Homo s... 49 2e-05
gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo s... 49 2e-05
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 49 2e-05
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 49 2e-05
gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo sa... 49 2e-05
gi|78000160 sorbin and SH3 domain containing 1 isoform 1 [Homo s... 49 2e-05
gi|224586855 sorbin and SH3 domain containing 2 isoform 8 [Homo ... 48 3e-05
gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo ... 48 3e-05
gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo ... 48 3e-05
gi|224586849 sorbin and SH3 domain containing 2 isoform 5 [Homo ... 48 3e-05
gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo ... 48 3e-05
gi|224586844 sorbin and SH3 domain containing 2 isoform 3 [Homo ... 48 3e-05
gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo s... 48 3e-05
gi|194733749 sorbin and SH3 domain containing 2 isoform 1 [Homo ... 48 3e-05
gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens] 48 3e-05
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 47 5e-05
gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens] 44 4e-04
gi|5453710 LIM and SH3 protein 1 [Homo sapiens] 43 0.001
gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo ... 42 0.001
gi|65301112 sorbin and SH3 domain containing 3 isoform 2 [Homo s... 42 0.001
gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo sapi... 42 0.001
gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo sapi... 42 0.001
>gi|24497612 ubiquitin associated and SH3 domain containing, B [Homo
sapiens]
Length = 649
Score = 1343 bits (3475), Expect = 0.0
Identities = 649/649 (100%), Positives = 649/649 (100%)
Query: 1 MAQYGHPSPLGMAAREELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALAS 60
MAQYGHPSPLGMAAREELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALAS
Sbjct: 1 MAQYGHPSPLGMAAREELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALAS 60
Query: 61 TGGRSVQAACDWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKA 120
TGGRSVQAACDWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKA
Sbjct: 61 TGGRSVQAACDWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKA 120
Query: 121 HNIFPHITLCQFFMCEDSKVDALGEALQTTVSRWKCKFSAPLPLELYTSSNFIGLFVKED 180
HNIFPHITLCQFFMCEDSKVDALGEALQTTVSRWKCKFSAPLPLELYTSSNFIGLFVKED
Sbjct: 121 HNIFPHITLCQFFMCEDSKVDALGEALQTTVSRWKCKFSAPLPLELYTSSNFIGLFVKED 180
Query: 181 SAEVLKKFAADFAAEAASKTEVHVEPHKKQLHVTLAYHFQASHLPTLEKLAQNIDVKLGC 240
SAEVLKKFAADFAAEAASKTEVHVEPHKKQLHVTLAYHFQASHLPTLEKLAQNIDVKLGC
Sbjct: 181 SAEVLKKFAADFAAEAASKTEVHVEPHKKQLHVTLAYHFQASHLPTLEKLAQNIDVKLGC 240
Query: 241 DWVATIFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTS 300
DWVATIFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTS
Sbjct: 241 DWVATIFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTS 300
Query: 301 LTTGCSGLLPENYITKADECSTWIFHGSYSILNTSSSNSLTFGDGVLERRPYEDQGLGET 360
LTTGCSGLLPENYITKADECSTWIFHGSYSILNTSSSNSLTFGDGVLERRPYEDQGLGET
Sbjct: 301 LTTGCSGLLPENYITKADECSTWIFHGSYSILNTSSSNSLTFGDGVLERRPYEDQGLGET 360
Query: 361 TPLTIICQPMQPLRVNSQPGPQKRCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLN 420
TPLTIICQPMQPLRVNSQPGPQKRCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLN
Sbjct: 361 TPLTIICQPMQPLRVNSQPGPQKRCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLN 420
Query: 421 MPHSLPQRSGGFRDYEKDAPITVFGCMQARLVGEALLESNTIIDHVYCSPSLRCVQTAHN 480
MPHSLPQRSGGFRDYEKDAPITVFGCMQARLVGEALLESNTIIDHVYCSPSLRCVQTAHN
Sbjct: 421 MPHSLPQRSGGFRDYEKDAPITVFGCMQARLVGEALLESNTIIDHVYCSPSLRCVQTAHN 480
Query: 481 ILKGLQQENHLKIRVEPGLFEWTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPISKL 540
ILKGLQQENHLKIRVEPGLFEWTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPISKL
Sbjct: 481 ILKGLQQENHLKIRVEPGLFEWTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPISKL 540
Query: 541 VVSESYDTYISRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQ 600
VVSESYDTYISRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQ
Sbjct: 541 VVSESYDTYISRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQ 600
Query: 601 MVRKIPYLGFCSCEELGETGIWQLTDPPILPLTHGPTGGFNWRETLLQE 649
MVRKIPYLGFCSCEELGETGIWQLTDPPILPLTHGPTGGFNWRETLLQE
Sbjct: 601 MVRKIPYLGFCSCEELGETGIWQLTDPPILPLTHGPTGGFNWRETLLQE 649
>gi|49640014 ubiquitin associated and SH3 domain containing, A short
form [Homo sapiens]
Length = 623
Score = 574 bits (1479), Expect = e-163
Identities = 291/633 (45%), Positives = 396/633 (62%), Gaps = 17/633 (2%)
Query: 12 MAARE-ELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQAAC 70
MAA E +LY+KV+ + + P S L+ LL+MGFP A KALA+TG ++ + A
Sbjct: 1 MAAGETQLYAKVSNKLKSRSSP------SLLEPLLAMGFPVHTALKALAATGRKTAEEAL 54
Query: 71 DWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKAHNIFPHITLC 130
WL H DP LDDP+P+EY L+L PTGPL +KL +FW++SK+ C KN+AH +FPH+TLC
Sbjct: 55 AWLHDHCNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLC 114
Query: 131 QFFMCEDSKVDALGEALQTTVSRWKCKFSAPLPLELYTSSNFIGLFVKEDSAEVLKKFAA 190
FF CED KV+ L EAL+ R F +PL L++S +++G FV A+V+++FA
Sbjct: 115 DFFTCEDQKVECLYEALKRAGDRLLGSFPTAVPLALHSSISYLGFFVSGSPADVIREFAM 174
Query: 191 DFAAEAASKTEVHVEPHKKQLHVTLAYHFQASHLPTLEKLAQNIDVKLGCDWVATIFSRD 250
FA EA+ + V+P KQLH+TLA+ F H TLE+LA+ I + C W A ++SRD
Sbjct: 175 TFATEASLLADCSVKPCTKQLHLTLAHKFYPHHQRTLEQLARAIPLGHSCQWTAALYSRD 234
Query: 251 IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 310
+RF +++TL+ ++ Y PQN DEL L PGD+IF+ P +Q SEGW+ G S TGC G LP
Sbjct: 235 MRFVHYQTLRALFQYKPQNVDELTLSPGDYIFVDPTQQDEASEGWVIGISQRTGCRGFLP 294
Query: 311 ENYITKADECSTWIFHGSYSILNTSSSNSLTFGDGVLERRPYEDQGLGETTPLTIICQPM 370
ENY +A E TW+ H Y+ + NS G+ + GE P T + +
Sbjct: 295 ENYTDRASESDTWVKHRMYTFSLATDLNSRKDGEA-------SSRCSGEFLPQT--ARSL 345
Query: 371 QPLRVNSQPGPQKRCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSG 430
L+ Q ++ + V RHGER+D +FGK WL QC G+Y R +LN P SLP+RS
Sbjct: 346 SSLQA-LQATVARKSVLVVRHGERVDQIFGKAWLQQCSTPDGKYYRPDLNFPCSLPRRSR 404
Query: 431 GFRDYEKDAPITVFGCMQARLVGEALLESNTIIDHVYCSPSLRCVQTAHNILKGLQQENH 490
G +D+E D P++ G Q+R+ G+ALL+S I V+ SP+LRCVQTA IL+ L+ E
Sbjct: 405 GIKDFENDPPLSSCGIFQSRIAGDALLDSGIRISSVFASPALRCVQTAKLILEELKLEKK 464
Query: 491 LKIRVEPGLFEWTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPISKLVVSESYDTYI 550
+KIRVEPG+FEWTKW AG T P + EL AN ++DT YRP P+S L+ +ESY Y+
Sbjct: 465 IKIRVEPGIFEWTKWEAGKTTPTLMSLEELKEANFNIDTDYRPAFPLSALMPAESYQEYM 524
Query: 551 SRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQMVRKIPYLGF 610
R +I++ C ILIV+H S+L++CT L GL P+ DF Q+VRKIP LG
Sbjct: 525 DRCTASMVQIVNTCPQDTGVILIVSHGSTLDSCTRPLLGLPPRECGDFAQLVRKIPSLGM 584
Query: 611 CSCEELGETGIWQLTDPPILPLTHGPTGGFNWR 643
C CEE E G W+L +PP+ LTHG FNWR
Sbjct: 585 CFCEENKEEGKWELVNPPVKTLTHGANAAFNWR 617
>gi|9507221 ubiquitin associated and SH3 domain containing, A long
form [Homo sapiens]
Length = 661
Score = 556 bits (1432), Expect = e-158
Identities = 293/671 (43%), Positives = 398/671 (59%), Gaps = 55/671 (8%)
Query: 12 MAARE-ELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQAAC 70
MAA E +LY+KV+ + + P S L+ LL+MGFP A KALA+TG ++ + A
Sbjct: 1 MAAGETQLYAKVSNKLKSRSSP------SLLEPLLAMGFPVHTALKALAATGRKTAEEAL 54
Query: 71 DWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKAHNIFPHITLC 130
WL H DP LDDP+P+EY L+L PTGPL +KL +FW++SK+ C KN+AH +FPH+TLC
Sbjct: 55 AWLHDHCNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLC 114
Query: 131 QFFMCEDSKVDALGEALQTTVSRWKCKFSAPLPLELYTSSNFIGLFVKEDSAEVLKKFAA 190
FF CED KV+ L EAL+ R F +PL L++S +++G FV A+V+++FA
Sbjct: 115 DFFTCEDQKVECLYEALKRAGDRLLGSFPTAVPLALHSSISYLGFFVSGSPADVIREFAM 174
Query: 191 DFAAEAA-------------SKTEVH-------------------------VEPHKKQLH 212
FA EA+ S+ H V+P KQLH
Sbjct: 175 TFATEASLLAGTSVSRFWIFSQVPGHGPNLRLSNLTRASFVSHYILQKYCSVKPCTKQLH 234
Query: 213 VTLAYHFQASHLPTLEKLAQNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYTPQNDDE 272
+TLA+ F H TLE+LA+ I + C W A ++SRD+RF +++TL+ ++ Y PQN DE
Sbjct: 235 LTLAHKFYPHHQRTLEQLARAIPLGHSCQWTAALYSRDMRFVHYQTLRALFQYKPQNVDE 294
Query: 273 LELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSIL 332
L L PGD+IF+ P +Q SEGW+ G S TGC G LPENY +A E TW+ H Y+
Sbjct: 295 LTLSPGDYIFVDPTQQDEASEGWVIGISQRTGCRGFLPENYTDRASESDTWVKHRMYTFS 354
Query: 333 NTSSSNSLTFGDGVLERRPYEDQGLGETTPLTIICQPMQPLRVNSQPGPQKRCLFVCRHG 392
+ NS G+ + GE P T + + L+ Q ++ + V RHG
Sbjct: 355 LATDLNSRKDGEA-------SSRCSGEFLPQT--ARSLSSLQA-LQATVARKSVLVVRHG 404
Query: 393 ERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKDAPITVFGCMQARLV 452
ER+D +FGK WL QC G+Y R +LN P SLP+RS G +D+E D P++ G Q+R+
Sbjct: 405 ERVDQIFGKAWLQQCSTPDGKYYRPDLNFPCSLPRRSRGIKDFENDPPLSSCGIFQSRIA 464
Query: 453 GEALLESNTIIDHVYCSPSLRCVQTAHNILKGLQQENHLKIRVEPGLFEWTKWVAGSTLP 512
G+ALL+S I V+ SP+LRCVQTA IL+ L+ E +KIRVEPG+FEWTKW AG T P
Sbjct: 465 GDALLDSGIRISSVFASPALRCVQTAKLILEELKLEKKIKIRVEPGIFEWTKWEAGKTTP 524
Query: 513 AWIPPSELAAANLSVDTTYRPHIPISKLVVSESYDTYISRSFQVTKEIISECKSKGNNIL 572
+ EL AN ++DT YRP P+S L+ +ESY Y+ R +I++ C IL
Sbjct: 525 TLMSLEELKEANFNIDTDYRPAFPLSALMPAESYQEYMDRCTASMVQIVNTCPQDTGVIL 584
Query: 573 IVAHASSLEACTCQLQGLSPQNSKDFVQMVRKIPYLGFCSCEELGETGIWQLTDPPILPL 632
IV+H S+L++CT L GL P+ DF Q+VRKIP LG C CEE E G W+L +PP+ L
Sbjct: 585 IVSHGSTLDSCTRPLLGLPPRECGDFAQLVRKIPSLGMCFCEENKEEGKWELVNPPVKTL 644
Query: 633 THGPTGGFNWR 643
THG FNWR
Sbjct: 645 THGANAAFNWR 655
>gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3
domain containing, A [Homo sapiens]
Length = 122
Score = 130 bits (327), Expect = 4e-30
Identities = 63/123 (51%), Positives = 85/123 (69%), Gaps = 7/123 (5%)
Query: 12 MAARE-ELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQAAC 70
MAA E +LY+KV+ + + P S L+ LL+MGFP A KALA+TG ++ + A
Sbjct: 1 MAAGETQLYAKVSNKLKSRSSP------SLLEPLLAMGFPVHTALKALAATGRKTAEEAL 54
Query: 71 DWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKAHNIFPHITLC 130
WL H DP LDDP+P+EY L+L PTGPL +KL +FW++SK+ C KN+AH +FPH+TLC
Sbjct: 55 AWLHDHCNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLC 114
Query: 131 QFF 133
FF
Sbjct: 115 DFF 117
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 64.7 bits (156), Expect = 3e-10
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 39 SALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPL--PREYVLYLRP 96
+AL+ L+ MGFPR RA+KALA TG + ++AA DWL H DP +D+PL P ++L P
Sbjct: 5 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLGHILGREP 64
Query: 97 T 97
T
Sbjct: 65 T 65
>gi|5453758 nebulette sarcomeric isoform [Homo sapiens]
Length = 1014
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 255 NHETLQVIYPYTPQNDDELELVPGDFIF-MSPMEQTSTSEGWIYGTSLTTGCSGLLPENY 313
N T + +Y Y+ Q++DE+ GD+I + P++ +GW+YGT TG +G+LP NY
Sbjct: 955 NLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPID-----DGWMYGTVQRTGRTGMLPANY 1009
Query: 314 I 314
I
Sbjct: 1010 I 1010
>gi|47087157 nebulette non-muscle isoform [Homo sapiens]
Length = 270
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 255 NHETLQVIYPYTPQNDDELELVPGDFIF-MSPMEQTSTSEGWIYGTSLTTGCSGLLPENY 313
N T + +Y Y+ Q++DE+ GD+I + P++ +GW+YGT TG +G+LP NY
Sbjct: 211 NLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPID-----DGWMYGTVQRTGRTGMLPANY 265
Query: 314 I 314
I
Sbjct: 266 I 266
>gi|78000171 sorbin and SH3 domain containing 1 isoform 7 [Homo
sapiens]
Length = 740
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
Q +Y Y PQNDDELEL GD + ME+ +GW GTS T G P NY+
Sbjct: 685 QALYSYIPQNDDELELRDGDIV--DVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 735
>gi|78000169 sorbin and SH3 domain containing 1 isoform 6 [Homo
sapiens]
Length = 781
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
Q +Y Y PQNDDELEL GD + ME+ +GW GTS T G P NY+
Sbjct: 726 QALYSYIPQNDDELELRDGDIV--DVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 776
>gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo
sapiens]
Length = 905
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
Q +Y Y PQNDDELEL GD + ME+ +GW GTS T G P NY+
Sbjct: 850 QALYSYIPQNDDELELRDGDIV--DVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 900
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
Q +Y Y PQNDDELEL GD + ME+ +GW GTS T G P NY+
Sbjct: 1096 QALYSYIPQNDDELELRDGDIV--DVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 1146
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
Q +Y Y PQNDDELEL GD + ME+ +GW GTS T G P NY+
Sbjct: 1237 QALYSYIPQNDDELELRDGDIV--DVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 1287
>gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo
sapiens]
Length = 816
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
Q +Y Y PQNDDELEL GD + ME+ +GW GTS T G P NY+
Sbjct: 761 QALYSYIPQNDDELELRDGDIV--DVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 811
>gi|78000160 sorbin and SH3 domain containing 1 isoform 1 [Homo
sapiens]
Length = 684
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
Q +Y Y PQNDDELEL GD + ME+ +GW GTS T G P NY+
Sbjct: 629 QALYSYIPQNDDELELRDGDIV--DVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 679
>gi|224586855 sorbin and SH3 domain containing 2 isoform 8 [Homo
sapiens]
Length = 492
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 246 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 305
+F+ + E Q +Y YTP+N+DELEL D I ME+ +GW GTS T
Sbjct: 425 VFTHENIQGGGEPFQALYNYTPRNEDELELRESDVI--DVMEK--CDDGWFVGTSRRTKF 480
Query: 306 SGLLPENYITK 316
G P NY+ +
Sbjct: 481 FGTFPGNYVKR 491
>gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo
sapiens]
Length = 1004
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 246 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 305
+F+ + E Q +Y YTP+N+DELEL D I ME+ +GW GTS T
Sbjct: 937 VFTHENIQGGGEPFQALYNYTPRNEDELELRESDVI--DVMEK--CDDGWFVGTSRRTKF 992
Query: 306 SGLLPENYITK 316
G P NY+ +
Sbjct: 993 FGTFPGNYVKR 1003
>gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo
sapiens]
Length = 824
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 246 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 305
+F+ + E Q +Y YTP+N+DELEL D I ME+ +GW GTS T
Sbjct: 757 VFTHENIQGGGEPFQALYNYTPRNEDELELRESDVI--DVMEK--CDDGWFVGTSRRTKF 812
Query: 306 SGLLPENYITK 316
G P NY+ +
Sbjct: 813 FGTFPGNYVKR 823
>gi|224586849 sorbin and SH3 domain containing 2 isoform 5 [Homo
sapiens]
Length = 661
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 246 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 305
+F+ + E Q +Y YTP+N+DELEL D I ME+ +GW GTS T
Sbjct: 594 VFTHENIQGGGEPFQALYNYTPRNEDELELRESDVI--DVMEK--CDDGWFVGTSRRTKF 649
Query: 306 SGLLPENYITK 316
G P NY+ +
Sbjct: 650 FGTFPGNYVKR 660
>gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo
sapiens]
Length = 731
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 246 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 305
+F+ + E Q +Y YTP+N+DELEL D I ME+ +GW GTS T
Sbjct: 664 VFTHENIQGGGEPFQALYNYTPRNEDELELRESDVI--DVMEK--CDDGWFVGTSRRTKF 719
Query: 306 SGLLPENYITK 316
G P NY+ +
Sbjct: 720 FGTFPGNYVKR 730
>gi|224586844 sorbin and SH3 domain containing 2 isoform 3 [Homo
sapiens]
Length = 644
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 246 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 305
+F+ + E Q +Y YTP+N+DELEL D I ME+ +GW GTS T
Sbjct: 577 VFTHENIQGGGEPFQALYNYTPRNEDELELRESDVI--DVMEK--CDDGWFVGTSRRTKF 632
Query: 306 SGLLPENYITK 316
G P NY+ +
Sbjct: 633 FGTFPGNYVKR 643
>gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1100
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 246 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 305
+F+ + E Q +Y YTP+N+DELEL D I ME+ +GW GTS T
Sbjct: 1033 VFTHENIQGGGEPFQALYNYTPRNEDELELRESDVI--DVMEK--CDDGWFVGTSRRTKF 1088
Query: 306 SGLLPENYITK 316
G P NY+ +
Sbjct: 1089 FGTFPGNYVKR 1099
>gi|194733749 sorbin and SH3 domain containing 2 isoform 1 [Homo
sapiens]
Length = 666
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 246 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 305
+F+ + E Q +Y YTP+N+DELEL D I ME+ +GW GTS T
Sbjct: 599 VFTHENIQGGGEPFQALYNYTPRNEDELELRESDVI--DVMEK--CDDGWFVGTSRRTKF 654
Query: 306 SGLLPENYITK 316
G P NY+ +
Sbjct: 655 FGTFPGNYVKR 665
>gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]
Length = 888
Score = 47.8 bits (112), Expect = 3e-05
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 262 IYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECS 321
IYPYTP+ +DELEL G+ + Q +GW GTS+ T G+ P NY+
Sbjct: 453 IYPYTPRKEDELELRKGEMFLVFERCQ----DGWFKGTSMHTSKIGVFPGNYVAPVTRAV 508
Query: 322 T 322
T
Sbjct: 509 T 509
Score = 42.7 bits (99), Expect = 0.001
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 216 AYHFQASHLPTLEKLAQNIDVKLGCDWVATIF--SRDIRFANHETLQVIYPYTPQNDDEL 273
A+H +AS L + +A + C + + SR + H +V+ Y PQ++ EL
Sbjct: 794 AFHRKASSLDSAVPIAP--PPRQACSSLGPVLNESRPVVCERH---RVVVSYPPQSEAEL 848
Query: 274 ELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
EL GD +F+ + +GW GT G +GL P +++
Sbjct: 849 ELKEGDIVFVHKKRE----DGWFKGTLQRNGKTGLFPGSFV 885
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 47.0 bits (110), Expect = 5e-05
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 262 IYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT 315
+Y Y PQ DELEL G+ + Q +GW G SL TG SG+ P NY+T
Sbjct: 472 LYAYKPQKSDELELHKGEMYRVLEKCQ----DGWFKGASLRTGVSGVFPGNYVT 521
Score = 41.2 bits (95), Expect = 0.003
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 257 ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
E +V+ Y PQ++ E+EL GD +F+ + +GW GT G +GL P +++
Sbjct: 826 ERYRVVVSYPPQSEAEIELKEGDIVFVHKKRE----DGWYKGTLQRNGRTGLFPGSFV 879
>gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]
Length = 405
Score = 44.3 bits (103), Expect = 4e-04
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 39 SALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPLP 87
+AL L MGFP RA KAL SV A +WL H DP +D PLP
Sbjct: 195 AALRQLTEMGFPENRATKAL-QLNHMSVPQAMEWLIEHAEDPTIDTPLP 242
>gi|5453710 LIM and SH3 protein 1 [Homo sapiens]
Length = 261
Score = 42.7 bits (99), Expect = 0.001
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
+ +Y Y+ ++DE+ GD I + +GW+YGT TG +G+LP NY+
Sbjct: 208 RAVYDYSAADEDEVSFQDGDTI----VNVQQIDDGWMYGTVERTGDTGMLPANYV 258
>gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo
sapiens]
Length = 671
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
+ +Y Y PQN+DELEL GD + M+Q +GW G S T G P NY+
Sbjct: 618 RAMYQYRPQNEDELELREGDRV--DVMQQ--CDDGWFVGVSRRTQKFGTFPGNYV 668
>gi|65301112 sorbin and SH3 domain containing 3 isoform 2 [Homo
sapiens]
Length = 329
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 260 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 314
+ +Y Y PQN+DELEL GD + M+Q +GW G S T G P NY+
Sbjct: 276 RAMYQYRPQNEDELELREGDRV--DVMQQ--CDDGWFVGVSRRTQKFGTFPGNYV 326
>gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo
sapiens]
Length = 835
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 16 EELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFS 75
EEL P + + S + L+ MGFP +KA+ TG +AA +W+ S
Sbjct: 612 EELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS 671
Query: 76 HVGDPFLDDPL 86
H+ DP +PL
Sbjct: 672 HMDDPDFANPL 682
Score = 38.9 bits (89), Expect = 0.015
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 44 LLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGD 79
++SMGF R +A KAL +T S++ A DW+FSH+ D
Sbjct: 708 IVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDD 742
>gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo
sapiens]
Length = 858
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 10 LGMAAREELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQAA 69
LG E+ S +P + P + S + L+ MGFP +KA+ TG +AA
Sbjct: 631 LGFYGNEDEDSFCSPHFSSPTSP--MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAA 688
Query: 70 CDWLFSHVGDPFLDDPL 86
+W+ SH+ DP +PL
Sbjct: 689 MNWVMSHMDDPDFANPL 705
Score = 38.9 bits (89), Expect = 0.015
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 44 LLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGD 79
++SMGF R +A KAL +T S++ A DW+FSH+ D
Sbjct: 731 IVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDD 765
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,780,728
Number of Sequences: 37866
Number of extensions: 1238006
Number of successful extensions: 2658
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 2538
Number of HSP's gapped (non-prelim): 171
length of query: 649
length of database: 18,247,518
effective HSP length: 109
effective length of query: 540
effective length of database: 14,120,124
effective search space: 7624866960
effective search space used: 7624866960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.