Search of human proteins with 24497536

Search of human proteins with 24497536

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24497536 homeobox C13 [Homo sapiens]
         (330 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24497536 homeobox C13 [Homo sapiens]                               695   0.0  
gi|24497554 homeobox A13 [Homo sapiens]                               280   1e-75
gi|116734702 homeobox D13 [Homo sapiens]                              264   7e-71
gi|62865866 homeobox B13 [Homo sapiens]                               238   5e-63
gi|182765442 homeobox A10 isoform a [Homo sapiens]                     97   2e-20
gi|23510368 homeobox D11 [Homo sapiens]                                93   3e-19
gi|194363768 homeobox D9 [Homo sapiens]                                89   5e-18
gi|5031759 homeobox A11 [Homo sapiens]                                 83   4e-16
gi|194353946 homeobox D12 [Homo sapiens]                               82   9e-16
gi|7657166 homeobox C11 [Homo sapiens]                                 80   3e-15
gi|27804315 homeobox C12 [Homo sapiens]                                79   4e-15
gi|24497533 homeobox C10 [Homo sapiens]                                78   1e-14
gi|148613882 homeobox A4 [Homo sapiens]                                77   2e-14
gi|23510366 homeobox D10 [Homo sapiens]                                77   3e-14
gi|15029508 homeobox B9 [Homo sapiens]                                 75   8e-14
gi|24497551 homeobox A10 isoform b [Homo sapiens]                      74   1e-13
gi|23097236 homeobox A9 [Homo sapiens]                                 73   4e-13
gi|24497547 homeobox C9 [Homo sapiens]                                 73   4e-13
gi|4885127 caudal type homeobox 4 [Homo sapiens]                       71   1e-12
gi|7710121 engrailed homeobox 2 [Homo sapiens]                         70   2e-12
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]           69   8e-12
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]             69   8e-12
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]              69   8e-12
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]             68   1e-11
gi|169636435 caudal type homeobox 2 [Homo sapiens]                     68   1e-11
gi|23397672 homeobox D4 [Homo sapiens]                                 67   2e-11
gi|24497517 homeobox A5 [Homo sapiens]                                 67   2e-11
gi|12056969 homeobox C8 [Homo sapiens]                                 67   2e-11
gi|11321638 homeobox C5 [Homo sapiens]                                 66   5e-11
gi|121114296 caudal type homeobox 1 [Homo sapiens]                     66   5e-11

>gi|24497536 homeobox C13 [Homo sapiens]
          Length = 330

 Score =  695 bits (1794), Expect = 0.0
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MTTSLLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGL 60
           MTTSLLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGL
Sbjct: 1   MTTSLLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGL 60

Query: 61  GSSCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLG 120
           GSSCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLG
Sbjct: 61  GSSCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLG 120

Query: 121 YGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFAS 180
           YGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFAS
Sbjct: 121 YGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFAS 180

Query: 181 SYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLW 240
           SYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLW
Sbjct: 181 SYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLW 240

Query: 241 KSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLS 300
           KSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLS
Sbjct: 241 KSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLS 300

Query: 301 ERQVTIWFQNRRVKEKKVVSKSKAPHLHST 330
           ERQVTIWFQNRRVKEKKVVSKSKAPHLHST
Sbjct: 301 ERQVTIWFQNRRVKEKKVVSKSKAPHLHST 330


>gi|24497554 homeobox A13 [Homo sapiens]
          Length = 388

 Score =  280 bits (717), Expect = 1e-75
 Identities = 183/394 (46%), Positives = 223/394 (56%), Gaps = 80/394 (20%)

Query: 1   MTTSLLLHPRWPE-SLMYVYED-------------------SAAESGIGGGGGGGGG--- 37
           MT S+LLHPRW E ++M++Y++                   +AA +     G GGGG   
Sbjct: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 60

Query: 38  -GTGGAGGGCSGASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRP-------PAPLGAPQ 89
                AGG  S A+   A       ++  A+ CR+L+ HP    P        AP  AP 
Sbjct: 61  PAAAAAGGNFSVAAAAAA------AAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPP 114

Query: 90  GAVYTDI-----------------PAP------EAARQCAPPPAPPTSSS--ATLGYGYP 124
            A                      P P      EAA+QC+P  A   SSS  A L YGY 
Sbjct: 115 SAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGY- 173

Query: 125 FGGSYYGC-RLSHNVNLQQKPCAYHPG--------DKYPEPSGALPGDDLSSRAKEFAFY 175
           FG  YY C R+  + N   K CA            DKY + +G    ++ SSRAKEFAFY
Sbjct: 174 FGSGYYPCARMGPHPNAI-KSCAQPASAAAAAAFADKYMDTAGPA-AEEFSSRAKEFAFY 231

Query: 176 -PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQVYC 229
              +A+     +Q MPGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+YC
Sbjct: 232 HQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYC 291

Query: 230 SKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEK 289
            KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK+K
Sbjct: 292 PKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDK 351

Query: 290 RRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 323
           RRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 352 RRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 385


>gi|116734702 homeobox D13 [Homo sapiens]
          Length = 343

 Score =  264 bits (675), Expect = 7e-71
 Identities = 149/308 (48%), Positives = 182/308 (59%), Gaps = 37/308 (12%)

Query: 30  GGGGGGGGGTGGAGGGCSG-ASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAP 88
           G           A    SG A PG +       SS  ++         V  RP AP    
Sbjct: 55  GRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSA--------VVAARPEAPPAK- 105

Query: 89  QGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYH 148
                 + PAP  A   A PP+ P      LGYGY FG  YY CR+SH V LQQ      
Sbjct: 106 ------ECPAPTPAAAAAAPPSAPA-----LGYGYHFGNGYYSCRMSHGVGLQQNALKSS 154

Query: 149 PG--------DKYPEPSG----ALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPG 196
           P         +KY + SG    ++P +++ +RAKE +FY  + S YQ +PGY+D+     
Sbjct: 155 PHASLGGFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMV---S 211

Query: 197 ISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFP-DVVPLQPEVS 255
             G  EPRH+A I +EGYQ W L+NGW+SQVYC+K+Q Q +H WKS FP DV   QP++ 
Sbjct: 212 TFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMC 271

Query: 256 SYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKE 315
            YRRGRKKRVPYTK+QLKELE EYA +KFI K+KRRRISA TNLSERQVTIWFQNRRVK+
Sbjct: 272 VYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKD 331

Query: 316 KKVVSKSK 323
           KK+VSK K
Sbjct: 332 KKIVSKLK 339


>gi|62865866 homeobox B13 [Homo sapiens]
          Length = 284

 Score =  238 bits (607), Expect = 5e-63
 Identities = 134/281 (47%), Positives = 174/281 (61%), Gaps = 12/281 (4%)

Query: 51  PGKAPSMDG---LGSSCPASHCRDLLPH-PVLGRPPAPLGAPQ-GAVYTDIP-APEAARQ 104
           PG   ++DG   +     A   R+L+ H P+   P AP   P       D+P + E  +Q
Sbjct: 3   PGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPPKQ 62

Query: 105 CAPPPAPPTSSS-ATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGD 163
           C P P  P  +S A + YGY FGG YY CR+S +     KPCA               G+
Sbjct: 63  CHPCPGVPQGTSPAPVPYGY-FGGGYYSCRVSRS---SLKPCAQAATLAAYPAETPTAGE 118

Query: 164 DLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSNGW 223
           +  SR  EFAFYP +  +YQ M  YLDVSVV  +    EPRHD+L+PV+ YQ WAL+ GW
Sbjct: 119 EYPSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGW 178

Query: 224 DSQVYCSKEQSQSAHLWKSPFPDVVPLQP-EVSSYRRGRKKRVPYTKVQLKELEKEYAAS 282
           +SQ+ C  EQ+     WK+ F D     P +  ++RRGRKKR+PY+K QL+ELE+EYAA+
Sbjct: 179 NSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAAN 238

Query: 283 KFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 323
           KFITK+KRR+ISA T+LSERQ+TIWFQNRRVKEKKV++K K
Sbjct: 239 KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVK 279


>gi|182765442 homeobox A10 isoform a [Homo sapiens]
          Length = 410

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 107/405 (26%), Positives = 146/405 (36%), Gaps = 131/405 (32%)

Query: 21  DSAAESGIGGGGGGGGGGTGGAGGGC--------------------------------SG 48
           DS   SG G  GGGGGG  GG GGG                                   
Sbjct: 32  DSLISSGRGEAGGGGGGAGGGGGGGYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEA 91

Query: 49  ASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAP----LGAPQGAVYT--DIPAPEAA 102
           ASPG      GLG   P +H          G  P+P    L AP+       D P P   
Sbjct: 92  ASPGSGGGGGGLG---PGAH----------GYGPSPIDLWLDAPRSCRMEPPDGPPPPPQ 138

Query: 103 RQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPG 162
           +Q  PPP PP  +                C  + N+  +   C Y   DK P+       
Sbjct: 139 QQPPPPPQPPQPAPQATS-----------CSFAQNIKEESSYCLYDSADKCPK------- 180

Query: 163 DDLSSRAKEFAFYPSF---------ASSYQAMPGYLDVSVVPGIS--------------- 198
             +S+ A E A +P            SS   +PGY  +S   G +               
Sbjct: 181 --VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGA 238

Query: 199 ----GHPEPRHDALIPV-------EGYQHWALSNGWDSQVYCSK----EQSQSAHLWKSP 243
                 P  R   L P           +  AL +     + C      +  + AH   S 
Sbjct: 239 GPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSA 298

Query: 244 FPDVVPLQPEVS---------------------SYRRGRKKRVPYTKVQLKELEKEYAAS 282
             ++ P   E S                     + + GRKKR PYTK Q  ELEKE+  +
Sbjct: 299 AEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFN 358

Query: 283 KFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPHL 327
            ++T+E+R  IS + +L++RQV IWFQNRR+K KK+  +++   L
Sbjct: 359 MYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIREL 403


>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 92/305 (30%), Positives = 120/305 (39%), Gaps = 74/305 (24%)

Query: 27  GIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHC---RDLLPHPVLGRPPA 83
           G   GGG  GGG GG GGG  G +P  A +     ++  A      R+LLP P   RP  
Sbjct: 81  GGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLP-PAGRRPDV 139

Query: 84  PLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGS---------YYGCRL 134
              AP+               CA P  P   + A   +    G +         +Y    
Sbjct: 140 LFKAPEPV-------------CAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAP 186

Query: 135 SHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVV 194
                  Q P    P    P+P GA    D  + A      P      +A PG       
Sbjct: 187 GPPFAGPQPP----PPPAPPQPEGAADKGDPRTGAGGGGGSPCT----KATPGSEPKGAA 238

Query: 195 PGISGHPE-PRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPE 253
            G  G  E P  +A                        E+S SA         V P    
Sbjct: 239 EGSGGDGEGPPGEA----------------------GAEKSSSA---------VAP---- 263

Query: 254 VSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRV 313
               +R RKKR PYTK Q++ELE+E+  + +I KEKR ++S   NL++RQV IWFQNRR+
Sbjct: 264 ----QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 319

Query: 314 KEKKV 318
           KEKK+
Sbjct: 320 KEKKL 324



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 43/131 (32%), Positives = 49/131 (37%), Gaps = 40/131 (30%)

Query: 27  GIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHC-------RDLL------ 73
           G GGGG  GGG +GG  GG  G + G AP      ++  A+         R+LL      
Sbjct: 77  GGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRR 136

Query: 74  -------PHPVL---GRPPAPLGA--------------PQG--AVYTDIPAPE-AARQCA 106
                  P PV    G P  P GA              PQG    Y   P P  A  Q  
Sbjct: 137 PDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPP 196

Query: 107 PPPAPPTSSSA 117
           PPPAPP    A
Sbjct: 197 PPPAPPQPEGA 207



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 21  DSAAESGIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGS 62
           + AA+ G    G GGGGG+      C+ A+PG  P     GS
Sbjct: 205 EGAADKGDPRTGAGGGGGSP-----CTKATPGSEPKGAAEGS 241


>gi|194363768 homeobox D9 [Homo sapiens]
          Length = 352

 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 88/299 (29%), Positives = 115/299 (38%), Gaps = 79/299 (26%)

Query: 29  GGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAP 88
           GG GGGGGGG GG         PG+ PS                         P P G  
Sbjct: 128 GGAGGGGGGGGGG---------PGRGPS-------------------------PGPSGPA 153

Query: 89  QGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYH 148
            G  Y   P   AA      PAP T++S T         S      S     Q       
Sbjct: 154 NGRHYGIKPETRAA------PAPATAASTTSSSSTSLSSSSKRTECSVARESQ------- 200

Query: 149 PGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDAL 208
            G   PE S              F    + A++    PG   +    G  G  EP   + 
Sbjct: 201 -GSSGPEFS-----------CNSFLQEKAAAATGGTGPG-AGIGAATGTGGSSEPSACSD 247

Query: 209 IPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVS--SYRRGRKKRVP 266
            P+ G               CS ++ +  H  +     + P  P  +    R  RKKR P
Sbjct: 248 HPIPG---------------CSLKEEEKQHS-QPQQQQLDPNNPAANWIHARSTRKKRCP 291

Query: 267 YTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAP 325
           YTK Q  ELEKE+  + ++T+++R  ++   NL+ERQV IWFQNRR+K KK +SK K P
Sbjct: 292 YTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK-MSKEKCP 349


>gi|5031759 homeobox A11 [Homo sapiens]
          Length = 313

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 39/64 (60%), Positives = 51/64 (79%)

Query: 255 SSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVK 314
           SS +R RKKR PYTK Q++ELE+E+  S +I KEKR ++S   NL++RQV IWFQNRR+K
Sbjct: 236 SSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMK 295

Query: 315 EKKV 318
           EKK+
Sbjct: 296 EKKI 299


>gi|194353946 homeobox D12 [Homo sapiens]
          Length = 270

 Score = 81.6 bits (200), Expect = 9e-16
 Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 43/259 (16%)

Query: 84  PLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQK 143
           P+  P+GA+      P AA   +  PA P  ++A  G+  P+         S  + LQ  
Sbjct: 41  PISYPRGAL------PWAATPASCAPAQPAGATAFGGFSQPYLAG------SGPLGLQPP 88

Query: 144 PCAYHPGDK---YPEPSGALP---GDDLSSRAKEFAFYPSFASSYQAMPGYLDV------ 191
                P ++   Y   + A P   G    S A E +  P+ A+   A   Y  V      
Sbjct: 89  TAKDGPEEQAKFYAPEAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGVGRATPG 148

Query: 192 --SVVPGISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVP 249
             +++ G    P  + D   P+               +  + + +  A   +   PD +P
Sbjct: 149 STTLLQGAPCAPGFKDDTKGPLN--------------LNMTVQAAGVASCLRPSLPDGLP 194

Query: 250 LQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQ 309
                ++  R RKKR PYTK Q+ ELE E+  ++FI ++KR+ +S   NLS++QV IWFQ
Sbjct: 195 WG---AAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQ 251

Query: 310 NRRVKEKKVVSKSKAPHLH 328
           NRR+K+K+VV + +A  L+
Sbjct: 252 NRRMKKKRVVLREQALALY 270


>gi|7657166 homeobox C11 [Homo sapiens]
          Length = 304

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 150 GDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQ-AMPGYLDVSVVPGISGHPEPRHDAL 208
           G  +P    A P    SS  K      +F   +  A  G  D    P  SG  E + +  
Sbjct: 123 GHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPE 182

Query: 209 IPVEGYQHWALSNGWDSQVY---CSKEQSQSAH-LWKSPFPDVVPLQPEVSSYRRGRKKR 264
            P           G +++      +   S SAH + K P     P  P      R RKKR
Sbjct: 183 APPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAP------RTRKKR 236

Query: 265 VPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKV 318
            PY+K Q++ELE+E+  + +I KEKR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 237 CPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290


>gi|27804315 homeobox C12 [Homo sapiens]
          Length = 282

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 35/66 (53%), Positives = 53/66 (80%)

Query: 259 RGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKV 318
           R RKKR PY+K+QL ELE E+  ++FIT+++RR +S   NLS++QV IWFQNRR+K+K++
Sbjct: 213 RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272

Query: 319 VSKSKA 324
           + + +A
Sbjct: 273 LLREQA 278



 Score = 33.1 bits (74), Expect = 0.35
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 5   LLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGGAGG--GCSGASPGKAPSM----- 57
           L L P  P +L + Y+ +A     GGGGG GGGG G       C       + S+     
Sbjct: 125 LPLEPSGPPALGFKYDYAA-----GGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGN 179

Query: 58  DGLGSSCPASHCRDLLPHPVLGRPPAP 84
            G G+  P S    L P   L    AP
Sbjct: 180 KGAGAGDPGSLVSPLNPGGGLSASGAP 206


>gi|24497533 homeobox C10 [Homo sapiens]
          Length = 342

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 38/72 (52%), Positives = 52/72 (72%)

Query: 258 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317
           + GRKKR PYTK Q  ELEKE+  + ++T+E+R  IS T NL++RQV IWFQNRR+K KK
Sbjct: 266 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325

Query: 318 VVSKSKAPHLHS 329
           +  +++   L S
Sbjct: 326 MNRENRIRELTS 337


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 88/318 (27%), Positives = 122/318 (38%), Gaps = 52/318 (16%)

Query: 3   TSLLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGS 62
           +S L++  + E     +E+ A  SG GG  GG GGG G             AP    L  
Sbjct: 4   SSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPG--------YQQPPAPPTQHLPL 55

Query: 63  SCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYG 122
             P       LPH   GR P               AP  AR+ A P A    +       
Sbjct: 56  QQPQ------LPHAGGGREPT----------ASYYAPRTAREPAYPAAALYPAHGAADTA 99

Query: 123 YPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSY 182
           YP+G  Y G          ++P A   G  +   +  +    L    +  A  P+     
Sbjct: 100 YPYG--YRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRC 157

Query: 183 QAMPGYLDVSVVPGI-SGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWK 241
           +A P        PG+ +G   P    L+              D      K +    + W 
Sbjct: 158 EAAPA------TPGVPAGGSAPACPLLLA-------------DKSPLGLKGKEPVVYPWM 198

Query: 242 SPFPDVVPLQPEVSSYRRGRKKR--VPYTKVQLKELEKEYAASKFITKEKRRRISATTNL 299
                V  + P   SY  G  KR    YT+ Q+ ELEKE+  ++++T+ +R  I+ T  L
Sbjct: 199 KKI-HVSAVNP---SYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCL 254

Query: 300 SERQVTIWFQNRRVKEKK 317
           SERQV IWFQNRR+K KK
Sbjct: 255 SERQVKIWFQNRRMKWKK 272


>gi|23510366 homeobox D10 [Homo sapiens]
          Length = 340

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query: 258 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317
           + GRKKR PYTK Q  ELEKE+  + ++T+E+R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 264 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323

Query: 318 VVSKSKAPHL 327
           +  +++   L
Sbjct: 324 MSRENRIREL 333


>gi|15029508 homeobox B9 [Homo sapiens]
          Length = 250

 Score = 75.1 bits (183), Expect = 8e-14
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 258 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317
           R  RKKR PYTK Q  ELEKE+  + ++T+++R  ++   NLSERQV IWFQNRR+K KK
Sbjct: 183 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242

Query: 318 V 318
           +
Sbjct: 243 M 243


>gi|24497551 homeobox A10 isoform b [Homo sapiens]
          Length = 94

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 35/70 (50%), Positives = 51/70 (72%)

Query: 258 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317
           + GRKKR PYTK Q  ELEKE+  + ++T+E+R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 18  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 77

Query: 318 VVSKSKAPHL 327
           +  +++   L
Sbjct: 78  MNRENRIREL 87


>gi|23097236 homeobox A9 [Homo sapiens]
          Length = 272

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 245 PDVVPLQPEVS--SYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSER 302
           P + P  P  +    R  RKKR PYTK Q  ELEKE+  + ++T+++R  ++   NL+ER
Sbjct: 189 PPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTER 248

Query: 303 QVTIWFQNRRVKEKKV 318
           QV IWFQNRR+K KK+
Sbjct: 249 QVKIWFQNRRMKMKKI 264


>gi|24497547 homeobox C9 [Homo sapiens]
          Length = 260

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 33/61 (54%), Positives = 45/61 (73%)

Query: 258 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317
           R  RKKR PYTK Q  ELEKE+  + ++T+++R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 190 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 249

Query: 318 V 318
           +
Sbjct: 250 M 250


>gi|4885127 caudal type homeobox 4 [Homo sapiens]
          Length = 284

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 30/220 (13%)

Query: 109 PAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDK----YPEPS---GALP 161
           P P ++ +A   + +  G  +      H  +L      Y P  +    YP PS   G +P
Sbjct: 38  PMPASNFAAAPAFSHYMGYPHMPSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVP 97

Query: 162 GDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSN 221
            +D++S     AF  +  S+   + G    S +PG +G       +L+P           
Sbjct: 98  VNDVTSSPA--AFCSTDYSNLGPVGGGTSGSSLPGQAG------GSLVPT---------- 139

Query: 222 GWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAA 281
             D+    +   S+S H   SP+  +          R   K RV YT  Q  ELEKE+  
Sbjct: 140 --DAGAAKASSPSRSRH---SPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHC 194

Query: 282 SKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSK 321
           +++IT +++  ++    LSERQV IWFQNRR KE+K++ K
Sbjct: 195 NRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKK 234



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 29  GGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHCRDLLPH-PVLGRPPAPLGA 87
           GG G  G GGTGG G     ++   AP+           H   + PH P LG   +P   
Sbjct: 22  GGDGTAGTGGTGGGGSPMPASNFAAAPA---FSHYMGYPHMPSMDPHWPSLGVWGSPYSP 78

Query: 88  PQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGY----PFGGSYYGCRL 134
           P+   ++  P P +     P     +S +A     Y    P GG   G  L
Sbjct: 79  PR-EDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSL 128


>gi|7710121 engrailed homeobox 2 [Homo sapiens]
          Length = 333

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 72/303 (23%), Positives = 112/303 (36%), Gaps = 80/303 (26%)

Query: 26  SGIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAPL 85
           +G GGG GGG GG GGA G   G   G +  + G GS  P  +            PP   
Sbjct: 90  AGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREPRQN------------PP--- 134

Query: 86  GAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPC 145
                              CAP    P  ++ +   G   GGS              K  
Sbjct: 135 -------------------CAPGAGGPLPAAGSDSPGDGEGGS--------------KTL 161

Query: 146 AYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRH 205
           + H G K     G  PG  L    K                G  D+SV            
Sbjct: 162 SLHGGAK----KGGDPGGPLDGSLKARGL------------GGGDLSV----------SS 195

Query: 206 DALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRV 265
           D+     G    A    W + VYC++   + +   +S  P       + +  +  ++ R 
Sbjct: 196 DSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPRSRKPK------KKNPNKEDKRPRT 249

Query: 266 PYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAP 325
            +T  QL+ L+ E+  ++++T+++R+ ++   +L+E Q+ IWFQN+R K KK        
Sbjct: 250 AFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIKKATGNKNTL 309

Query: 326 HLH 328
            +H
Sbjct: 310 AVH 312


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 24/188 (12%)

Query: 141 QQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPG 196
           Q  P   HP   +P   GAL    P D         A  P+ A  +  +P  L    +P 
Sbjct: 41  QPPPPPPHP---FPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQL---ALPH 94

Query: 197 ISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPD-VVPLQPEVS 255
               P P        EG +   L      Q+     +S  AH WK  +       +PE  
Sbjct: 95  PPAGPFP--------EGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPE-- 144

Query: 256 SYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKE 315
                ++ R  YT+ QL ELEKE+  +K+I++ +R  ++   NL+ER + IWFQNRR+K 
Sbjct: 145 ---ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKW 201

Query: 316 KKVVSKSK 323
           KK   K +
Sbjct: 202 KKEEDKKR 209


>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
          Length = 139

 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 251 QPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQN 310
           +PE SS  + RK+R  +TK QL+ELE E+A   ++T+ +R  I+   +LSERQV +WFQN
Sbjct: 49  KPEGSS--KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQN 106

Query: 311 RRVKEKKV 318
           RR+K K+V
Sbjct: 107 RRMKWKRV 114


>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
          Length = 254

 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 251 QPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQN 310
           +PE SS  + RK+R  +TK QL+ELE E+A   ++T+ +R  I+   +LSERQV +WFQN
Sbjct: 164 KPEGSS--KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQN 221

Query: 311 RRVKEKKV 318
           RR+K K+V
Sbjct: 222 RRMKWKRV 229


>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
          Length = 363

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 88/332 (26%), Positives = 128/332 (38%), Gaps = 61/332 (18%)

Query: 31  GGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAPQG 90
           GGG   GG GG GGG     PG A S+D L    P      L     +  P  PL  PQ 
Sbjct: 5   GGGSAPGGNGGGGGG----GPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA 60

Query: 91  AVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFG-GSYYGCRLSHNVNLQ---QKPCA 146
                +PA        PP AP  S +  L   +  G G      ++    L    + P A
Sbjct: 61  LAPAPLPAG------LPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDA 114

Query: 147 YH----------------------PGDKYPEPSGALPGDDLSSRAKEFAFYPS-----FA 179
           ++                      PG + PE  G L  D+L    ++ A  P      F+
Sbjct: 115 FYGPQELAAAAAAAAATAARNNPEPGGRRPE--GGLEADELLPAREKVAEPPPPPPPHFS 172

Query: 180 SSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSNGWDSQ---VYCSKEQSQS 236
            ++ ++P    V      S   E    +     G +     +G DS+      S      
Sbjct: 173 ETFPSLPAEGKV-----YSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPG 227

Query: 237 AHLWKSP---------FPDVVPLQPEVSSYR-RGRKKRVPYTKVQLKELEKEYAASKFIT 286
           A L   P           +  P+   V++   + R++R  +T  QL ELEKE+   K+++
Sbjct: 228 ALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLS 287

Query: 287 KEKRRRISATTNLSERQVTIWFQNRRVKEKKV 318
             +R +I+    LSE QV IWFQNRR K K++
Sbjct: 288 LTERSQIAHALKLSEVQVKIWFQNRRAKWKRI 319


>gi|169636435 caudal type homeobox 2 [Homo sapiens]
          Length = 313

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 249 PLQPEVSSYRRGRKK---RVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVT 305
           P Q  + S  + R K   RV YT  Q  ELEKE+  S++IT  ++  ++AT  LSERQV 
Sbjct: 172 PAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVK 231

Query: 306 IWFQNRRVKEKKVVSK 321
           IWFQNRR KE+K+  K
Sbjct: 232 IWFQNRRAKERKINKK 247


>gi|23397672 homeobox D4 [Homo sapiens]
          Length = 255

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 60/219 (27%), Positives = 88/219 (40%), Gaps = 31/219 (14%)

Query: 108 PPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPS-------GAL 160
           P  PP       GY    G  YYG           +   + P   YP P        G+ 
Sbjct: 15  PKFPPCEEYLQGGYLGEQGADYYGGGA--------QGADFQPPGLYPRPDFGEQPFGGSG 66

Query: 161 PGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALS 220
           PG   +  A+     P     + A PG             P P      P+ G + ++ S
Sbjct: 67  PGPGSALPARGHGQEPGGPGGHYAAPG----------EPCPAPPAPPPAPLPGARAYSQS 116

Query: 221 NGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKR--VPYTKVQLKELEKE 278
           +        + +Q    + W       V +     +Y  G  KR    YT+ Q+ ELEKE
Sbjct: 117 DPKQPPSGTALKQPAVVYPWMKK----VHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKE 172

Query: 279 YAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317
           +  ++++T+ +R  I+ T  LSERQ+ IWFQNRR+K KK
Sbjct: 173 FHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 19/115 (16%)

Query: 1   MTTSLLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGGAGGGCSGASPGKAP---SM 57
           M  S  + P++P    Y+      E G    GGG  G      G       G+ P   S 
Sbjct: 7   MVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSG 66

Query: 58  DGLGSSCPA-SHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAP 111
            G GS+ PA  H          G+ P   G    A     PAP      APPPAP
Sbjct: 67  PGPGSALPARGH----------GQEPGGPGGHYAAPGEPCPAPP-----APPPAP 106


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 17/111 (15%)

Query: 220 SNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRR-------------GRKKRVP 266
           ++G +     S EQ+ SA    SP P   P QP++  + R             G++ R  
Sbjct: 146 ASGAEEDAPASSEQA-SAQSEPSPAP---PAQPQIYPWMRKLHISHDNIGGPEGKRARTA 201

Query: 267 YTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317
           YT+ Q  ELEKE+  ++++T+ +R  I+    LSERQ+ IWFQNRR+K KK
Sbjct: 202 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 252


>gi|12056969 homeobox C8 [Homo sapiens]
          Length = 242

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 35/213 (16%)

Query: 128 SYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFA----SSYQ 183
           +YY CR   +V  +     Y PG       G+ PG   +S   +  F+   +    S YQ
Sbjct: 22  AYYDCRFPQSVG-RSHALVYGPG-------GSAPGFQHASHHVQDFFHHGTSGISNSGYQ 73

Query: 184 AMPGYL----DVSVVPGISGHPEP------RHDALIPVEGYQHWALSNGWDSQVYCSKEQ 233
             P  L    D S   G    P        +  +++     +  A +N  + Q + ++  
Sbjct: 74  QNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQNS 133

Query: 234 SQSAHL-WKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRR 292
           S S    W         ++P     R GR+    Y++ Q  ELEKE+  + ++T+++R  
Sbjct: 134 SPSLMFPW---------MRPHAPGRRSGRQT---YSRYQTLELEKEFLFNPYLTRKRRIE 181

Query: 293 ISATTNLSERQVTIWFQNRRVKEKKVVSKSKAP 325
           +S    L+ERQV IWFQNRR+K KK  +K K P
Sbjct: 182 VSHALGLTERQVKIWFQNRRMKWKKENNKDKLP 214


>gi|11321638 homeobox C5 [Homo sapiens]
          Length = 222

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 15/170 (8%)

Query: 154 PEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEG 213
           P PS +L G D+++  +     P  A S  A PG+      PG      P +  +   + 
Sbjct: 52  PAPSNSLHGVDMAANPRAHPDRP--ACSAAAAPGH-----APG-RDEAAPLNPGMYSQKA 103

Query: 214 YQHWALSNGWDSQVYCSKEQSQS---AHLWKSPFP-DVVPLQPEV--SSYRRGRKKRVPY 267
            +  AL     S     +EQ+Q+   A L + P P  + P   ++  S    G++ R  Y
Sbjct: 104 ARP-ALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSY 162

Query: 268 TKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317
           T+ Q  ELEKE+  ++++T+ +R  I+    L+ERQ+ IWFQNRR+K KK
Sbjct: 163 TRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 212


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 73/226 (32%), Positives = 93/226 (41%), Gaps = 36/226 (15%)

Query: 99  PEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSG 158
           P+A    APPPAPP          YP   SY     SH       P A+  G  +P P  
Sbjct: 27  PQAYGPPAPPPAPPQ---------YPDFSSY-----SHVEPAPAPPTAW--GAPFPAPK- 69

Query: 159 ALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWA 218
               DD ++     A+ P  A+   A P  L     P  S  P P      P  G    A
Sbjct: 70  ----DDWAA-----AYGPGPAAP-AASPASLAFGPPPDFSPVPAP------PGPGPGLLA 113

Query: 219 LSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKK-RVPYTKVQLKELEK 277
              G          Q  + + W      V       S   R + K RV YT  Q  ELEK
Sbjct: 114 QPLGGPGTPSSPGAQRPTPYEWMRR--SVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEK 171

Query: 278 EYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 323
           E+  S++IT  ++  ++A   L+ERQV IWFQNRR KE+KV  K +
Sbjct: 172 EFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQ 217



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 81  PPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYP 124
           PP   GAP  A     P  + A    P PA P +S A+L +G P
Sbjct: 57  PPTAWGAPFPA-----PKDDWAAAYGPGPAAPAASPASLAFGPP 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,076,729
Number of Sequences: 37866
Number of extensions: 1113954
Number of successful extensions: 21472
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 490
Number of HSP's that attempted gapping in prelim test: 8656
Number of HSP's gapped (non-prelim): 6784
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.