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Search of human proteins with 24497533
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497533 homeobox C10 [Homo sapiens]
(342 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497533 homeobox C10 [Homo sapiens] 704 0.0
gi|23510366 homeobox D10 [Homo sapiens] 285 5e-77
gi|182765442 homeobox A10 isoform a [Homo sapiens] 218 8e-57
gi|24497551 homeobox A10 isoform b [Homo sapiens] 164 8e-41
gi|24497547 homeobox C9 [Homo sapiens] 137 1e-32
gi|23097236 homeobox A9 [Homo sapiens] 133 3e-31
gi|15029508 homeobox B9 [Homo sapiens] 130 2e-30
gi|194363768 homeobox D9 [Homo sapiens] 127 1e-29
gi|5031759 homeobox A11 [Homo sapiens] 112 6e-25
gi|23510368 homeobox D11 [Homo sapiens] 105 6e-23
gi|7657166 homeobox C11 [Homo sapiens] 105 8e-23
gi|24497517 homeobox A5 [Homo sapiens] 94 1e-19
gi|13273317 homeobox B8 [Homo sapiens] 94 2e-19
gi|12056969 homeobox C8 [Homo sapiens] 93 4e-19
gi|11321638 homeobox C5 [Homo sapiens] 91 1e-18
gi|4504469 homeobox B5 [Homo sapiens] 91 1e-18
gi|13489077 homeobox A6 [Homo sapiens] 89 7e-18
gi|23503237 homeobox B6 [Homo sapiens] 89 7e-18
gi|4504465 homeobox B2 [Homo sapiens] 89 7e-18
gi|15029506 homeobox D8 [Homo sapiens] 88 1e-17
gi|85068580 homeobox B7 [Homo sapiens] 86 4e-17
gi|19923391 homeobox D3 [Homo sapiens] 85 8e-17
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 85 1e-16
gi|148613882 homeobox A4 [Homo sapiens] 84 1e-16
gi|24497513 homeobox A3 isoform a [Homo sapiens] 84 2e-16
gi|13562112 homeobox A3 isoform a [Homo sapiens] 84 2e-16
gi|24497556 homeobox A7 [Homo sapiens] 84 2e-16
gi|24497538 homeobox C4 [Homo sapiens] 82 5e-16
gi|24497540 homeobox C4 [Homo sapiens] 82 5e-16
gi|23397672 homeobox D4 [Homo sapiens] 82 9e-16
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 704 bits (1817), Expect = 0.0
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MTCPRNVTPNSYAEPLAAPGGGERYSRSAGMYMQSGSDFNCGVMRGCGLAPSLSKRDEGS 60
MTCPRNVTPNSYAEPLAAPGGGERYSRSAGMYMQSGSDFNCGVMRGCGLAPSLSKRDEGS
Sbjct: 1 MTCPRNVTPNSYAEPLAAPGGGERYSRSAGMYMQSGSDFNCGVMRGCGLAPSLSKRDEGS 60
Query: 61 SPSLALNTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRA 120
SPSLALNTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRA
Sbjct: 61 SPSLALNTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRA 120
Query: 121 KSGPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASL 180
KSGPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASL
Sbjct: 121 KSGPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASL 180
Query: 181 NPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADS 240
NPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADS
Sbjct: 181 NPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADS 240
Query: 241 SPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLE 300
SPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLE
Sbjct: 241 SPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLE 300
Query: 301 ISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT 342
ISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT
Sbjct: 301 ISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT 342
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 285 bits (728), Expect = 5e-77
Identities = 163/323 (50%), Positives = 210/323 (65%), Gaps = 15/323 (4%)
Query: 25 YSRSAGMYMQSGS-DFNCGVMRGCGLAPSLSKRDEGSSPSLALNTYPSYLSQLDSWGDPK 83
YS SA MYM S D M+ CGL PSL+KR E + ++ +N +P Y+ Q+DSW DP
Sbjct: 28 YSSSASMYMPPPSADMGTYGMQTCGLLPSLAKR-EVNHQNMGMNVHP-YIPQVDSWTDPN 85
Query: 84 AAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGEH-E 142
+ R+EQPV + + +CS+ ++KEE+ CCMYS ++ E Y +PESC E+ E
Sbjct: 86 RSCRIEQPVTQQVPTCSFTTNIKEESNCCMYSDKRNKLISAEVPSYQRLVPESCPVENPE 145
Query: 143 VPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAE---HLESPQLGGKVSFP 199
VPVP Y+R S +Y A KT + N E LNPR L + QL +
Sbjct: 146 VPVPGYFRLSQTY-ATGKTQEYN--NSPEGSSTVMLQLNPRGAAKPQLSAAQLQMEKKMN 202
Query: 200 ETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTT 259
E P S + +++++ ++ KG E A+ + SSP+ + E+KEEIK++ T
Sbjct: 203 E-PVSGQEPTKVSQVESPEA----KGGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPT 257
Query: 260 GNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNR 319
NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISK++NLTDRQVKIWFQNR
Sbjct: 258 SNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNR 317
Query: 320 RMKLKKMNRENRIRELTSNFNFT 342
RMKLKKM+RENRIRELT+N F+
Sbjct: 318 RMKLKKMSRENRIRELTANLTFS 340
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 218 bits (554), Expect = 8e-57
Identities = 154/368 (41%), Positives = 196/368 (53%), Gaps = 48/368 (13%)
Query: 17 AAPGGGERYSRSAGMYMQSGSDFNCGVMRGCGLAPSLS-KRDEGSSPS-------LALNT 68
A GGG Y G+Y+ +D G ++ CGL P+L KR+E +SP L
Sbjct: 49 AGGGGGGGYYAHGGVYLPPAADLPYG-LQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGA 107
Query: 69 YPSYLSQLDSWGDPKAAYRLEQPVGRP-------------------LSSCSYPPSVKEEN 109
+ S +D W D + R+E P G P +SCS+ ++KEE+
Sbjct: 108 HGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEES 167
Query: 110 VCCMY-SAEKRAKSGPEAALYSH----PLPESC-LGEHE-VPVPSYYRASPSY-SALDKT 161
C+Y SA+K K AA + P P+ C LG VPVP Y+R S +Y +A
Sbjct: 168 SYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYG 227
Query: 162 PHCSGANDFEA-PFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSL 220
GA A PF + P + P S K + P S
Sbjct: 228 SGGGGAQQLGAGPFPAQ----PPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSG 283
Query: 221 AGPKG------SPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCP 274
G +G S S +E+ ++SS + + ++ K EN NWLTAKSGRKKRCP
Sbjct: 284 GGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAA-NWLTAKSGRKKRCP 342
Query: 275 YTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRE 334
YTKHQTLELEKEFLFNMYLTRERRLEIS++++LTDRQVKIWFQNRRMKLKKMNRENRIRE
Sbjct: 343 YTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRE 402
Query: 335 LTSNFNFT 342
LT+NFNF+
Sbjct: 403 LTANFNFS 410
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 164 bits (416), Expect = 8e-41
Identities = 79/89 (88%), Positives = 85/89 (95%), Gaps = 1/89 (1%)
Query: 254 KAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVK 313
K EN NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS++++LTDRQVK
Sbjct: 7 KGENAA-NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVK 65
Query: 314 IWFQNRRMKLKKMNRENRIRELTSNFNFT 342
IWFQNRRMKLKKMNRENRIRELT+NFNF+
Sbjct: 66 IWFQNRRMKLKKMNRENRIRELTANFNFS 94
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 137 bits (346), Expect = 1e-32
Identities = 87/208 (41%), Positives = 111/208 (53%), Gaps = 34/208 (16%)
Query: 144 PVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPK 203
PVPS ++S Y PH + R L P L G VSFP P
Sbjct: 68 PVPS--QSSVVYHPYGPQPHLGADTRY-----MRTWLEP---------LSGAVSFPSFPA 111
Query: 204 SDSQTP-SPNEIKTEQSLAGPK----------GSPSESEKERAKAADSSPD------TSD 246
P+ ++ GP GSP E ++RA SP+ +
Sbjct: 112 GGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGEL-RDRAPQTLPSPEADALAGSKH 170
Query: 247 NEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTIN 306
E K ++ N NW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E+++ +N
Sbjct: 171 KEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLN 230
Query: 307 LTDRQVKIWFQNRRMKLKKMNRENRIRE 334
LT+RQVKIWFQNRRMK+KKMN+E +E
Sbjct: 231 LTERQVKIWFQNRRMKMKKMNKEKTDKE 258
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 133 bits (334), Expect = 3e-31
Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 3/108 (2%)
Query: 225 GSPSESEKERAKAADSSPDTSDNEA---KEEIKAENTTGNWLTAKSGRKKRCPYTKHQTL 281
GSP +++ S + ++NE+ K I N NWL A+S RKKRCPYTKHQTL
Sbjct: 160 GSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTL 219
Query: 282 ELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRE 329
ELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KK+N++
Sbjct: 220 ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 130 bits (326), Expect = 2e-30
Identities = 68/133 (51%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 203 KSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDN------EAKEEIKAE 256
K++ +P E+ + + P+ S S A ++ P DN E KE
Sbjct: 117 KAEPLLGAPGELLKQGT---PEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQT 173
Query: 257 NTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWF 316
N + NWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E+++ +NL++RQVKIWF
Sbjct: 174 NPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWF 233
Query: 317 QNRRMKLKKMNRE 329
QNRRMK+KKMN+E
Sbjct: 234 QNRRMKMKKMNKE 246
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 127 bits (320), Expect = 1e-29
Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 12/179 (6%)
Query: 151 ASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPS 210
+S S S+ K CS A + + S N + + GG P + +
Sbjct: 180 SSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGT-----GPGAGIGAAT 234
Query: 211 PNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRK 270
+E S P S KE K S P ++++ N NW+ A+S RK
Sbjct: 235 GTGGSSEPSACSDHPIPGCSLKEEEKQ-HSQPQ------QQQLDPNNPAANWIHARSTRK 287
Query: 271 KRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRE 329
KRCPYTK+QTLELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KKM++E
Sbjct: 288 KRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKE 346
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 112 bits (279), Expect = 6e-25
Identities = 96/296 (32%), Positives = 145/296 (48%), Gaps = 37/296 (12%)
Query: 67 NTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSY-----PPSVK---EENVCCMYSAEK 118
++ PS+L Q S +Y P +P+ ++ P+ K N+ YSAE+
Sbjct: 28 SSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEE 87
Query: 119 RAK----SGPEAA-LYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAP 173
P AA + L +S + P P+ +S YS + + A D
Sbjct: 88 LVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTPAV--SSNFYSTVGRNGVLPQAFD---Q 142
Query: 174 FEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIK------TEQSLAGPKGSP 227
F + A P E+L S G S + P + + T + T S +G G
Sbjct: 143 FFETAYGTP--ENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGC 200
Query: 228 SES-----EKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLE 282
E+ EKER + +SS + E KA ++G + RKKRCPYTK+Q E
Sbjct: 201 RETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSG-----QRTRKKRCPYTKYQIRE 255
Query: 283 LEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSN 338
LE+EF F++Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK KK+NR+ R++ ++N
Sbjct: 256 LEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 105 bits (262), Expect = 6e-23
Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 6/115 (5%)
Query: 224 KGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLEL 283
K +P K A+ + + EA E + + + + RKKRCPYTK+Q EL
Sbjct: 227 KATPGSEPKGAAEGSGGDGEGPPGEAGAE-----KSSSAVAPQRSRKKRCPYTKYQIREL 281
Query: 284 EKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSN 338
E+EF FN+Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK KK+NR+ R++ T N
Sbjct: 282 EREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRD-RLQYFTGN 335
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 105 bits (261), Expect = 8e-23
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 202 PKSDSQTPSPNEIKTEQSLAGPKGSPSESEK-ERAKAADSSPDTSDNEAKEEIKAENTTG 260
P ++ E K E G S +E A+A + + + S + + + E G
Sbjct: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKG 224
Query: 261 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRR 320
A RKKRCPY+K Q ELE+EF FN+Y+ +E+RL++S+ +NLTDRQVKIWFQNRR
Sbjct: 225 AAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRR 284
Query: 321 MKLKKMNRENRIRELTSN 338
MK KK++R+ R++ + N
Sbjct: 285 MKEKKLSRD-RLQYFSGN 301
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 94.4 bits (233), Expect = 1e-19
Identities = 76/252 (30%), Positives = 110/252 (43%), Gaps = 50/252 (19%)
Query: 119 RAKSGPEAALYSHPLPESCLGEHEVPVPSYYRASPS---------YSALDKTPHCSGAND 169
R +GP+ L+++ G+H V +R S S Y+ +D + SG+
Sbjct: 12 RYPNGPDYQLHNY-------GDHS-SVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGH 63
Query: 170 F--------------EAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIK 215
F AP E R S + H P + +P SDS N +
Sbjct: 64 FGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLS 123
Query: 216 TEQSLAGPKGSPSESEKE---RAKAADSSPDTSDNEAKEEIK------AENTTGNWLT-- 264
+ GS S +E A A+ S +A + + A+ W+
Sbjct: 124 NSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKL 183
Query: 265 --------AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWF 316
G++ R YT++QTLELEKEF FN YLTR RR+EI+ + L++RQ+KIWF
Sbjct: 184 HISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWF 243
Query: 317 QNRRMKLKKMNR 328
QNRRMK KK N+
Sbjct: 244 QNRRMKWKKDNK 255
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 93.6 bits (231), Expect = 2e-19
Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 4/117 (3%)
Query: 218 QSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLT--AKSGRKK-RCP 274
QSL G + P + K A +S + E E+ + W+ A +GR++ R
Sbjct: 94 QSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQT 152
Query: 275 YTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENR 331
Y+++QTLELEKEFLFN YLTR+RR+E+S + LT+RQVKIWFQNRRMK KK N +++
Sbjct: 153 YSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 92.8 bits (229), Expect = 4e-19
Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 5/113 (4%)
Query: 225 GSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTG---NWLT--AKSGRKKRCPYTKHQ 279
G+ E+ + SS +T+ +E + + ++ W+ A R R Y+++Q
Sbjct: 101 GAQQEASVVQYPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQ 160
Query: 280 TLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRI 332
TLELEKEFLFN YLTR+RR+E+S + LT+RQVKIWFQNRRMK KK N ++++
Sbjct: 161 TLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKL 213
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 90.9 bits (224), Expect = 1e-18
Identities = 68/209 (32%), Positives = 90/209 (43%), Gaps = 34/209 (16%)
Query: 147 SYYRASP--------------SYSALDKTPHCSGANDFEAPFEQRA----------SLNP 182
S+Y+ SP S S + + +C G D F A + NP
Sbjct: 8 SFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANP 67
Query: 183 RAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSP 242
RA H + P + P D P N Q A P + E K + +
Sbjct: 68 RA-HPDRPACSAAAAPGHAPGRDEAAPL-NPGMYSQKAARP--ALEERAKSSGEIKEEQA 123
Query: 243 DTSDNEAKEEIKAENTTGNWLTA------KSGRKKRCPYTKHQTLELEKEFLFNMYLTRE 296
T + A W+T G++ R YT++QTLELEKEF FN YLTR
Sbjct: 124 QTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRR 183
Query: 297 RRLEISKTINLTDRQVKIWFQNRRMKLKK 325
RR+EI+ + L +RQ+KIWFQNRRMK KK
Sbjct: 184 RRIEIANNLCLNERQIKIWFQNRRMKWKK 212
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 90.9 bits (224), Expect = 1e-18
Identities = 75/246 (30%), Positives = 111/246 (45%), Gaps = 39/246 (15%)
Query: 119 RAKSGPEAALYSHPLPESCLGEHEVPVPSYYRA-SPSYSALDKTPHCSGAND-------- 169
R +GP+ L ++ S G + P + + +Y+ +D + + S A+
Sbjct: 12 RYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSSASSSHFGAVGE 71
Query: 170 ----FEAP-----FEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSL 220
F AP F Q AS + P G S P + S + + +
Sbjct: 72 SSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGD-SHGAKPSASSPSDQATSASSSANF 130
Query: 221 AGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGN---------WL-------- 263
+ + SE E A + SSP + A+ E A +T W+
Sbjct: 131 TEIDEASASSEPEEAASQLSSPSLA--RAQPEPMATSTAAPEGQTPQIFPWMRKLHISHD 188
Query: 264 -TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMK 322
T G++ R YT++QTLELEKEF FN YLTR RR+EI+ + L++RQ+KIWFQNRRMK
Sbjct: 189 MTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 248
Query: 323 LKKMNR 328
KK N+
Sbjct: 249 WKKDNK 254
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 88.6 bits (218), Expect = 7e-18
Identities = 42/72 (58%), Positives = 53/72 (73%)
Query: 257 NTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWF 316
N+ + GR+ R YT++QTLELEKEF FN YLTR RR+EI+ + LT+RQ+KIWF
Sbjct: 144 NSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF 203
Query: 317 QNRRMKLKKMNR 328
QNRRMK KK N+
Sbjct: 204 QNRRMKWKKENK 215
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 88.6 bits (218), Expect = 7e-18
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 209 PSPNEIKTEQSLAGPKGSPSESE-KERAKAADSSPDTSDNEAKEEIKAENTTGNWLT--- 264
P+P + ++S G+ + + +D + D S EE K W+
Sbjct: 76 PAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN 135
Query: 265 -------AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQ 317
SGR+ R YT++QTLELEKEF +N YLTR RR+EI+ + LT+RQ+KIWFQ
Sbjct: 136 SCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQ 195
Query: 318 NRRMKLKKMNR 328
NRRMK KK ++
Sbjct: 196 NRRMKWKKESK 206
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 88.6 bits (218), Expect = 7e-18
Identities = 67/206 (32%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 130 SHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQR-ASLNPRAEHLE 188
S P CL + ++ +S S L P PFEQ SL P A L+
Sbjct: 14 SQPSLAECLTSFPAVLETFQTSSIKESTLIPPP---------PPFEQTFPSLQPGASTLQ 64
Query: 189 SPQL------GGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSP 242
P+ G + P P + P+P ++ + K PS+S + AA + P
Sbjct: 65 RPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKK--PSQSATSPSPAASAVP 122
Query: 243 DTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 302
+ + + G R+ R YT Q LELEKEF FN YL R RR+EI+
Sbjct: 123 ASGVGSPADGLGLPEAGGG-----GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
Query: 303 KTINLTDRQVKIWFQNRRMKLKKMNR 328
++LT+RQVK+WFQNRRMK K+ +
Sbjct: 178 ALLDLTERQVKVWFQNRRMKHKRQTQ 203
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 88.2 bits (217), Expect = 1e-17
Identities = 42/67 (62%), Positives = 53/67 (79%)
Query: 265 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLK 324
A R+ R Y++ QTLELEKEFLFN YLTR+RR+E+S + LT+RQVKIWFQNRRMK K
Sbjct: 194 APGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWK 253
Query: 325 KMNRENR 331
K N +++
Sbjct: 254 KENNKDK 260
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 86.3 bits (212), Expect = 4e-17
Identities = 53/114 (46%), Positives = 71/114 (62%), Gaps = 11/114 (9%)
Query: 217 EQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRC--P 274
EQ+L+G P +S AKAA + + A E + W+ + +KR
Sbjct: 93 EQNLSGV--CPGDS----AKAAGAKEQRDSDLAAE---SNFRIYPWMRSSGTDRKRGRQT 143
Query: 275 YTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNR 328
YT++QTLELEKEF +N YLTR RR+EI+ T+ LT+RQ+KIWFQNRRMK KK N+
Sbjct: 144 YTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 85.1 bits (209), Expect = 8e-17
Identities = 64/174 (36%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 172 APFEQRASLNPRAEH--LESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPK----G 225
AP + A LN + Q GG S P S+ Q P P + P G
Sbjct: 78 APAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGG 137
Query: 226 SPSESEKERAKAADSSPDTSDN------EAKEEIKAEN---TTGNWLTAKS-----GRKK 271
P++ K A+ SS S E+++ K +N T G KS ++
Sbjct: 138 VPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRV 197
Query: 272 RCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325
R YT Q +ELEKEF FN YL R RR+E++ +NLT+RQ+KIWFQNRRMK KK
Sbjct: 198 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 84.7 bits (208), Expect = 1e-16
Identities = 57/193 (29%), Positives = 80/193 (41%), Gaps = 7/193 (3%)
Query: 141 HEVPVPSYYRASPSYSAL------DKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGG 194
H P P + P + A D + C A P E+ +SP
Sbjct: 37 HYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHF 96
Query: 195 KVSFPETPKSDSQTPSPNEIKTEQ-SLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEI 253
VS + E+ T L G P + A+ + S KE
Sbjct: 97 PVSDARRRPNSGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS 156
Query: 254 KAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVK 313
+ G + RK+R +TK Q ELE EF + YLTR RR EI+ ++L++RQVK
Sbjct: 157 DNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVK 216
Query: 314 IWFQNRRMKLKKM 326
+WFQNRRMK K++
Sbjct: 217 VWFQNRRMKWKRV 229
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 84.3 bits (207), Expect = 1e-16
Identities = 74/232 (31%), Positives = 98/232 (42%), Gaps = 52/232 (22%)
Query: 144 PVPSYYRA----SPSYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFP 199
P SYY P+Y A P GA D P+ R +P G+ P
Sbjct: 69 PTASYYAPRTAREPAYPAAALYP-AHGAADTAYPYGYRGGASP-----------GRPPQP 116
Query: 200 ETPKSDSQTPS----------PNEIKTEQSLAGPKGSPSESEKERAKA------------ 237
E P + ++ P+ P Q A P +P E A
Sbjct: 117 EQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACP 176
Query: 238 ---ADSSPDTSDNEA--------KEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKE 286
AD SP + K + A N + N ++ R YT+ Q LELEKE
Sbjct: 177 LLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYN---GGEPKRSRTAYTRQQVLELEKE 233
Query: 287 FLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSN 338
F FN YLTR RR+EI+ T+ L++RQVKIWFQNRRMK KK ++ + +SN
Sbjct: 234 FHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSN 285
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 84.0 bits (206), Expect = 2e-16
Identities = 60/174 (34%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 172 APFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESE 231
AP Q SL H PQ P P P+P S + P+ + +
Sbjct: 77 APPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPT 136
Query: 232 KERAKAADSSPDTSDNEAKE-----EIKAENTTGNWLTAKSG---------------RKK 271
A AA S S AK+ + +NT ++ SG ++
Sbjct: 137 P--ANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRA 194
Query: 272 RCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325
R YT Q +ELEKEF FN YL R RR+E++ +NLT+RQ+KIWFQNRRMK KK
Sbjct: 195 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 84.0 bits (206), Expect = 2e-16
Identities = 60/174 (34%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 172 APFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESE 231
AP Q SL H PQ P P P+P S + P+ + +
Sbjct: 77 APPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPT 136
Query: 232 KERAKAADSSPDTSDNEAKE-----EIKAENTTGNWLTAKSG---------------RKK 271
A AA S S AK+ + +NT ++ SG ++
Sbjct: 137 P--ANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRA 194
Query: 272 RCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325
R YT Q +ELEKEF FN YL R RR+E++ +NLT+RQ+KIWFQNRRMK KK
Sbjct: 195 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 83.6 bits (205), Expect = 2e-16
Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 262 WLTAKSGRKKRC--PYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNR 319
W+ + +KR YT++QTLELEKEF FN YLTR RR+EI+ + LT+RQ+KIWFQNR
Sbjct: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
Query: 320 RMKLKKMNRE 329
RMK KK +++
Sbjct: 182 RMKWKKEHKD 191
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 82.4 bits (202), Expect = 5e-16
Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 7/115 (6%)
Query: 220 LAGPKGSPSESEKERAKAADSSPDTSDNEAK------EEIKAENTTGNWLTAKSGRKKRC 273
L+G SPS + ++ A P ++ ++ ++I N+ ++ R
Sbjct: 103 LSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNY-NGGEPKRSRT 161
Query: 274 PYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNR 328
YT+ Q LELEKEF +N YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK +R
Sbjct: 162 AYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 82.4 bits (202), Expect = 5e-16
Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 7/115 (6%)
Query: 220 LAGPKGSPSESEKERAKAADSSPDTSDNEAK------EEIKAENTTGNWLTAKSGRKKRC 273
L+G SPS + ++ A P ++ ++ ++I N+ ++ R
Sbjct: 103 LSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNY-NGGEPKRSRT 161
Query: 274 PYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNR 328
YT+ Q LELEKEF +N YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK +R
Sbjct: 162 AYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 81.6 bits (200), Expect = 9e-16
Identities = 38/62 (61%), Positives = 47/62 (75%)
Query: 264 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKL 323
T ++ R YT+ Q LELEKEF FN YLTR RR+EI+ T+ L++RQ+KIWFQNRRMK
Sbjct: 150 TGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKW 209
Query: 324 KK 325
KK
Sbjct: 210 KK 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,542,258
Number of Sequences: 37866
Number of extensions: 843407
Number of successful extensions: 4209
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 3524
Number of HSP's gapped (non-prelim): 883
length of query: 342
length of database: 18,247,518
effective HSP length: 103
effective length of query: 239
effective length of database: 14,347,320
effective search space: 3429009480
effective search space used: 3429009480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.