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Search of human proteins with 24497447
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497447 nucleoporin 50kDa isoform a [Homo sapiens]
(440 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497447 nucleoporin 50kDa isoform a [Homo sapiens] 882 0.0
gi|24497451 nucleoporin 50kDa isoform b [Homo sapiens] 882 0.0
gi|150418007 RAN binding protein 2 [Homo sapiens] 40 0.003
gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo sapi... 39 0.007
gi|157266273 RANBP2-like and GRIP domain containing 1 [Homo sapi... 37 0.047
gi|33946327 nucleoporin 214kDa [Homo sapiens] 35 0.10
gi|118200331 RANBP2-like and GRIP domain containing 2 [Homo sapi... 35 0.10
gi|56788377 nucleoporin like 1 isoform b [Homo sapiens] 35 0.10
gi|131412228 keratin 13 isoform b [Homo sapiens] 35 0.10
gi|131412225 keratin 13 isoform a [Homo sapiens] 35 0.10
gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens] 35 0.10
gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens] 35 0.10
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens] 35 0.10
gi|30102928 nucleoporin like 1 isoform a [Homo sapiens] 34 0.23
gi|150170670 piccolo isoform 2 [Homo sapiens] 34 0.23
gi|150378539 piccolo isoform 1 [Homo sapiens] 34 0.23
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 34 0.23
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 34 0.23
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 34 0.23
gi|83267877 RANBP2-like and GRIP domain containing 5 isoform 1 [... 34 0.30
gi|182765478 RANBP2-like and GRIP domain containing 6 [Homo sapi... 34 0.30
gi|19923193 heat shock 70kD protein binding protein [Homo sapiens] 34 0.30
gi|55956899 keratin 9 [Homo sapiens] 33 0.39
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 33 0.39
gi|169162953 PREDICTED: RANBP2-like and GRIP domain containing 8... 33 0.51
gi|23943882 serine/threonine kinase 33 [Homo sapiens] 33 0.51
gi|168823443 RAD54-like 2 [Homo sapiens] 33 0.51
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 33 0.67
gi|68342038 CD34 antigen isoform a [Homo sapiens] 33 0.67
gi|4502661 CD34 antigen isoform b [Homo sapiens] 33 0.67
>gi|24497447 nucleoporin 50kDa isoform a [Homo sapiens]
Length = 440
Score = 882 bits (2279), Expect = 0.0
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGL 60
MASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGL
Sbjct: 1 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGL 60
Query: 61 SNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASS 120
SNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASS
Sbjct: 61 SNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASS 120
Query: 121 KACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANIEQQHGNSGRNS 180
KACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANIEQQHGNSGRNS
Sbjct: 121 KACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANIEQQHGNSGRNS 180
Query: 181 ESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATS 240
ESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATS
Sbjct: 181 ESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATS 240
Query: 241 ASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEG 300
ASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEG
Sbjct: 241 ASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEG 300
Query: 301 DSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTAN 360
DSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTAN
Sbjct: 301 DSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTAN 360
Query: 361 QKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIR 420
QKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIR
Sbjct: 361 QKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIR 420
Query: 421 VKTSEDADELHKILLEKKDA 440
VKTSEDADELHKILLEKKDA
Sbjct: 421 VKTSEDADELHKILLEKKDA 440
>gi|24497451 nucleoporin 50kDa isoform b [Homo sapiens]
Length = 468
Score = 882 bits (2279), Expect = 0.0
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGL 60
MASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGL
Sbjct: 29 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGL 88
Query: 61 SNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASS 120
SNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASS
Sbjct: 89 SNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASS 148
Query: 121 KACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANIEQQHGNSGRNS 180
KACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANIEQQHGNSGRNS
Sbjct: 149 KACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANIEQQHGNSGRNS 208
Query: 181 ESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATS 240
ESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATS
Sbjct: 209 ESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATS 268
Query: 241 ASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEG 300
ASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEG
Sbjct: 269 ASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEG 328
Query: 301 DSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTAN 360
DSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTAN
Sbjct: 329 DSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTAN 388
Query: 361 QKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIR 420
QKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIR
Sbjct: 389 QKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIR 448
Query: 421 VKTSEDADELHKILLEKKDA 440
VKTSEDADELHKILLEKKDA
Sbjct: 449 VKTSEDADELHKILLEKKDA 468
>gi|150418007 RAN binding protein 2 [Homo sapiens]
Length = 3224
Score = 40.4 bits (93), Expect = 0.003
Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 32/237 (13%)
Query: 230 KTDPSSLGATSASFNFGKK---VDSSVLGSLSSVPLTGFSFSPGNSSLF--GKDTT---- 280
K +P + G T N+ + +D SV S SSV + + SP +LF G+ TT
Sbjct: 2212 KPNPENTGPTLEWDNYDLREDALDDSV--SSSSVHASPLASSPVRKNLFRFGESTTGFNF 2269
Query: 281 --QSKPVSSPFPTKPLE-GQAEGDSGECKGGDEEENDE---------PPKVVVTEVKE-E 327
+S S P K + G + G E EEE D P V V+ +E E
Sbjct: 2270 SFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENE 2329
Query: 328 DAFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNILLNVLIPP 384
+S + KL+ Y KD ++KE+GIG + L+ N++ ++++R D L + N I P
Sbjct: 2330 QVVFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVL-KLCANHRITP 2388
Query: 385 NMPC-TRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA 440
+M G V + + E+ + +R K + AD KI E K A
Sbjct: 2389 DMTLQNMKGTERVWLWTACDFADGERKVE---HLAVRFKLQDVADSFKKIFDEAKTA 2442
>gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo sapiens]
Length = 1758
Score = 39.3 bits (90), Expect = 0.007
Identities = 67/238 (28%), Positives = 101/238 (42%), Gaps = 34/238 (14%)
Query: 230 KTDPSSLGATSASFNFGKK---VDSSVLGSLSSVPLTGFSFSPGNSSLF--GKDTTQSK- 283
K +P + G T N + +D SV S SSV + + SP +LF G+ TT S
Sbjct: 1237 KPNPENTGPTLEWDNCDLREDALDDSV--SSSSVHASPLASSPVRKNLFHFGESTTGSNF 1294
Query: 284 -------PVSSPFPTKPLEGQAEGDSGECKGGDEEEND----EP----PKVVVTEVKEED 328
P SP G + G E EEE D EP P +V EE+
Sbjct: 1295 SFKSALSPSKSPAKLNQ-SGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEEN 1353
Query: 329 --AFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNILLNVLIP 383
+S + +L+ Y KD ++KE+GIG + L+ N++ ++++R D L + N I
Sbjct: 1354 EKVVFSHRAELYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVL-KLCANHTIT 1412
Query: 384 PNMPC-TRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA 440
P+M G V + + E+ + +R K + AD KI E K A
Sbjct: 1413 PDMSLQNMKGTERVWVWTACDFADGERKVE---HLAVRFKLQDVADSFKKIFDEAKTA 1467
>gi|157266273 RANBP2-like and GRIP domain containing 1 [Homo sapiens]
Length = 1756
Score = 36.6 bits (83), Expect = 0.047
Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 46/296 (15%)
Query: 160 KDYEKYLAN-----IEQQHGNSGRNSESESN---KVAAETQSPSL-FGSTKLQQESTFLF 210
KD++ +L N E+++ SG + S+ K E P+L + + L++++
Sbjct: 1195 KDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDA---L 1251
Query: 211 HGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPG 270
N + + +S + + ++ FNF K S+ S + + +G S
Sbjct: 1252 DDNVSSSSVHDSPLASSPVRKNIFRFDESTTGFNFSFKSALSLSKSPAKLNQSGTSVGTD 1311
Query: 271 NSSLFGKDTTQSKPVSSPF--PTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEED 328
S D TQ + + P PL E SGE + E
Sbjct: 1312 EES----DVTQEEERDGQYFEPVVPLPDLVEVSSGE--------------------ENEQ 1347
Query: 329 AFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNILLNVLIPPN 385
+S + +L+ Y KD ++KE+GIG + L+ N++ ++++R D L + N I P+
Sbjct: 1348 VVFSHRAELYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVL-KLCANHRITPD 1406
Query: 386 MPC-TRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA 440
M G V + + E+ + +R K + AD KI E K A
Sbjct: 1407 MSLQNMKGTERVWVWTACDFADGERKVE---HLAVRFKLQDVADSFKKIFDEAKTA 1459
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 35.4 bits (80), Expect = 0.10
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 21 GFESDTGGAFKGFK-----GLVVPSGG-GRFSGFGSGAGGKPLEGLSNGNNITSAPPFAS 74
G + TGG G + G V SG GR GF SG GGKP + +N N +SA
Sbjct: 1852 GQAASTGGIVFGQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFG 1911
Query: 75 AKAAADPKVAFGSLAA 90
+ A ++ FG+ A
Sbjct: 1912 STATSNTSNLFGNSGA 1927
Score = 31.2 bits (69), Expect = 2.0
Identities = 56/242 (23%), Positives = 88/242 (36%), Gaps = 35/242 (14%)
Query: 68 SAPPFASAKAAADPKVAFGSLAANGPT---TLVDKVSNPKTNGDSQQPSSSGLASSKACV 124
+ PP +S V ++++ GP T +++ T+ + PS+ A
Sbjct: 1581 AVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIVAPGPSAEAAAFGTVTS 1640
Query: 125 GNAYHKQL-AALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLAN--IEQQHGNSGRN-- 179
G++ Q AA + S + + + T P TP+F A QQ G++
Sbjct: 1641 GSSVFAQPPAASSSSAFNQLTNNTATAP--SATPVFGQVAASTAPSLFGQQTGSTASTAA 1698
Query: 180 -----SESESNKVAAETQSPSLFGSTKLQQESTF-----------LFHGNKTEDTPDKKM 223
S S + A T +P +FG T Q S F F P
Sbjct: 1699 ATPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGFSSVPAFGQ 1758
Query: 224 EVASEK-KTDPSSLGA-----TSASFNFGKKVDSSVLGSLSSVPLTGFSFSPG---NSSL 274
+S T S GA +S+SF+FG+ ++ G F SPG S+
Sbjct: 1759 PASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFGQGGSV 1818
Query: 275 FG 276
FG
Sbjct: 1819 FG 1820
>gi|118200331 RANBP2-like and GRIP domain containing 2 [Homo
sapiens]
Length = 1013
Score = 35.4 bits (80), Expect = 0.10
Identities = 66/296 (22%), Positives = 117/296 (39%), Gaps = 46/296 (15%)
Query: 160 KDYEKYLAN-----IEQQHGNSGRNSESESN---KVAAETQSPSL-FGSTKLQQESTFLF 210
KD++ +L N E+++ SG + S+ K E P+L + + L++++
Sbjct: 452 KDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDA---L 508
Query: 211 HGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPG 270
N + + +S + + ++ FNF K S+ S + + +G S
Sbjct: 509 DDNVSSSSVHDSPLASSPVRKNIFRFDESTTGFNFSFKSALSLSKSPAKLNQSGTSVGTD 568
Query: 271 NSSLFGKDTTQSKPVSSPF--PTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEED 328
S D TQ + + P PL E SGE + E
Sbjct: 569 EES----DVTQEEERDGQYFEPVVPLPDLVEVSSGE--------------------ENEQ 604
Query: 329 AFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNILLNVLIPPN 385
+S +L+ Y KD ++KE+GIG + L+ N++ ++++R D L + N I P+
Sbjct: 605 VVFSHMAELYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVL-KLCANHRITPD 663
Query: 386 MPC-TRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA 440
M G V + + E+ + +R K + AD KI E K A
Sbjct: 664 MSLQNMKGTERVWVWTACDFADGERKVE---HLAVRFKLQDVADSFKKIFDEAKTA 716
>gi|56788377 nucleoporin like 1 isoform b [Homo sapiens]
Length = 587
Score = 35.4 bits (80), Expect = 0.10
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 40 SGGGRFSGFGSGAGGKPLEGLSNGN-NITSAPPFASAKAAADPKVAFGSLAANGPTTLVD 98
S GG FS FG+GA P GL+ GN TS P SA ++ FGS A G T
Sbjct: 23 STGGVFS-FGTGASSNPSVGLNFGNLGSTSTPATTSAPSSGFGTGLFGSKPATGFTLGGT 81
Query: 99 KVSNPKTNGDSQQPSSSG 116
P T + S G
Sbjct: 82 NTGTPATTSAATTGFSLG 99
>gi|131412228 keratin 13 isoform b [Homo sapiens]
Length = 420
Score = 35.4 bits (80), Expect = 0.10
Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 17/140 (12%)
Query: 26 TGGAFKGFKGLVVPS-GGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVA 84
+GG+ G+ G V GGG SGFG G GG GL G F A V
Sbjct: 38 SGGSAGGYGGGVSCGFGGGAGSGFGGGYGG----GLGGGYGGGLGGGFGGGFAGG--FVD 91
Query: 85 FGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIV 144
FG+ G T +K+ + Q + LAS V A + A L +RDW +
Sbjct: 92 FGA-CDGGLLTGNEKI--------TMQNLNDRLASYLEKV-RALEEANADLEVKIRDWHL 141
Query: 145 KHVNTNPLCDLTPIFKDYEK 164
K +P D +P +K E+
Sbjct: 142 KQSPASPERDYSPYYKTIEE 161
>gi|131412225 keratin 13 isoform a [Homo sapiens]
Length = 458
Score = 35.4 bits (80), Expect = 0.10
Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 17/140 (12%)
Query: 26 TGGAFKGFKGLVVPS-GGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVA 84
+GG+ G+ G V GGG SGFG G GG GL G F A V
Sbjct: 38 SGGSAGGYGGGVSCGFGGGAGSGFGGGYGG----GLGGGYGGGLGGGFGGGFAGG--FVD 91
Query: 85 FGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIV 144
FG+ G T +K+ + Q + LAS V A + A L +RDW +
Sbjct: 92 FGA-CDGGLLTGNEKI--------TMQNLNDRLASYLEKV-RALEEANADLEVKIRDWHL 141
Query: 145 KHVNTNPLCDLTPIFKDYEK 164
K +P D +P +K E+
Sbjct: 142 KQSPASPERDYSPYYKTIEE 161
>gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 35.4 bits (80), Expect = 0.10
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 225 VASEKKTDP-------SSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGK 277
+++ KK +P S+ GATS+S FGK L S + +F N + F
Sbjct: 21 ISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQ-LPSFYKIGSKRANFDEEN-AYFED 78
Query: 278 DTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 337
+ S V P+ P E K D + +D+P + + EV+++ A + K
Sbjct: 79 EEEDSSNVDLPY--IPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAA---RDMKR 133
Query: 338 FYKKDNEFKE-KGI 350
+KD E K KGI
Sbjct: 134 LEEKDKERKNVKGI 147
>gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 35.4 bits (80), Expect = 0.10
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 225 VASEKKTDP-------SSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGK 277
+++ KK +P S+ GATS+S FGK L S + +F N + F
Sbjct: 21 ISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQ-LPSFYKIGSKRANFDEEN-AYFED 78
Query: 278 DTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 337
+ S V P+ P E K D + +D+P + + EV+++ A + K
Sbjct: 79 EEEDSSNVDLPY--IPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAA---RDMKR 133
Query: 338 FYKKDNEFKE-KGI 350
+KD E K KGI
Sbjct: 134 LEEKDKERKNVKGI 147
>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
Length = 5183
Score = 35.4 bits (80), Expect = 0.10
Identities = 53/247 (21%), Positives = 83/247 (33%), Gaps = 31/247 (12%)
Query: 79 ADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCS 138
AD K+ + G + + +GD + S S + + V N L AL
Sbjct: 2737 ADEKMQSSGIPNGGHIRQESQEQSEVDHGDFEMVSESMVLETAENVNNGNPSPLEALLAG 2796
Query: 139 VRDWIVKHVNTNPLCDLTPIFKDYEKY-----LANIEQQHGNSGRNSESESNKVAAETQS 193
+ P+ D+ P D L+ + Q G+S +S ++ + S
Sbjct: 2797 AEGF-------PPMLDIPPDADDETMVELAIALSLQQDQQGSSSSALGLQSLGLSGQAPS 2849
Query: 194 PSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSV 253
S + L + ++D S +T P+ G + S + G VDS
Sbjct: 2850 SSSLDAGTLSDTTA---SAPASDDEGSTAATDGSTLRTSPADHGGSVGSESGGSAVDS-- 2904
Query: 254 LGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPV------SSPFPTKPLEGQAEGDSGECKG 307
+ G G SS +G T + P SS G EGD E +G
Sbjct: 2905 --------VAGEHSVSGRSSAYGDATAEGHPAGPGSVSSSTGAISTTTGHQEGDGSEGEG 2956
Query: 308 GDEEEND 314
E E D
Sbjct: 2957 EGETEGD 2963
>gi|30102928 nucleoporin like 1 isoform a [Homo sapiens]
Length = 599
Score = 34.3 bits (77), Expect = 0.23
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 40 SGGGRFSGFGSGAGGKPLEGLSNGN-NITSAPPFASAKAAADPKVAFGSLAANGPT 94
S GG FS FG+GA P GL+ GN TS P SA ++ FGS A G T
Sbjct: 23 STGGVFS-FGTGASSNPSVGLNFGNLGSTSTPATTSAPSSGFGTGLFGSKPATGFT 77
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 34.3 bits (77), Expect = 0.23
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 217 DTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFG 276
D P K++ +E+KT P K DS+ S P TG SP +S
Sbjct: 777 DIPSSKVQSQAEEKTTPPL------------KTDSAKPSQ--SFPPTGEKVSPFDSKAIP 822
Query: 277 KDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDA 329
+ + SK +S P P+ +GQ + D ++ +EP K + DA
Sbjct: 823 RPASDSKIISHPGPSSESKGQKQVD-------PVQKKEEPKKAQTKMSPKPDA 868
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 34.3 bits (77), Expect = 0.23
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 217 DTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFG 276
D P K++ +E+KT P K DS+ S P TG SP +S
Sbjct: 777 DIPSSKVQSQAEEKTTPPL------------KTDSAKPSQ--SFPPTGEKVSPFDSKAIP 822
Query: 277 KDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDA 329
+ + SK +S P P+ +GQ + D ++ +EP K + DA
Sbjct: 823 RPASDSKIISHPGPSSESKGQKQVD-------PVQKKEEPKKAQTKMSPKPDA 868
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 34.3 bits (77), Expect = 0.23
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 21 GFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAAD 80
G+ + + G+ GGG G G G+GG G + + A+A AAA
Sbjct: 231 GYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAA 290
Query: 81 PKVAFGSLAANGPTTLVDKVSNPKTNGDSQQ--PSSSGLAS-SKACVGNA 127
G G + +S+P+ G P G AS SKA G+A
Sbjct: 291 AAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA 340
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 34.3 bits (77), Expect = 0.23
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 21 GFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAAD 80
G+ + + G+ GGG G G G+GG G + + A+A AAA
Sbjct: 231 GYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAA 290
Query: 81 PKVAFGSLAANGPTTLVDKVSNPKTNGDSQQ--PSSSGLAS-SKACVGNA 127
G G + +S+P+ G P G AS SKA G+A
Sbjct: 291 AAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA 340
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 34.3 bits (77), Expect = 0.23
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 21 GFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAAD 80
G+ + + G+ GGG G G G+GG G + + A+A AAA
Sbjct: 231 GYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAA 290
Query: 81 PKVAFGSLAANGPTTLVDKVSNPKTNGDSQQ--PSSSGLAS-SKACVGNA 127
G G + +S+P+ G P G AS SKA G+A
Sbjct: 291 AAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA 340
>gi|83267877 RANBP2-like and GRIP domain containing 5 isoform 1 [Homo
sapiens]
Length = 1765
Score = 33.9 bits (76), Expect = 0.30
Identities = 68/302 (22%), Positives = 120/302 (39%), Gaps = 58/302 (19%)
Query: 160 KDYEKYLAN-----IEQQHGNSGRNSESESN---KVAAETQSPSL-FGSTKLQQE----- 205
KD++ +L N E+++ SG + S+ K AE P+L + + L+++
Sbjct: 1202 KDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNAENTGPTLEWDNYDLREDALDDS 1261
Query: 206 -STFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTG 264
S+ H + +P +K ++ T S NF K S+ S + + +G
Sbjct: 1262 VSSSSVHASPLASSPVRKNLFRFDESTTGS---------NFSFKSALSLSKSPAKLNQSG 1312
Query: 265 FSFSPGNSSLFGKDTTQSKPVSSPF--PTKPLEGQAEGDSGECKGGDEEENDEPPKVVVT 322
S S+ TQ + + P PL E SGE
Sbjct: 1313 TSVGTDEESV----VTQEEERDGQYFEPVVPLPDLVEVSSGE------------------ 1350
Query: 323 EVKEEDAFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNILLN 379
+ E +S + +++ Y KD ++KE+GIG + L+ N++ ++++R D L + N
Sbjct: 1351 --ENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVL-KLCAN 1407
Query: 380 VLIPPNMPC-TRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKK 438
I P+M G V + + E+ + +R K + AD KI E K
Sbjct: 1408 HRITPDMSLQNMKGTERVWVWTACDFADGERKVE---HLAVRFKLQDVADSFKKIFDEAK 1464
Query: 439 DA 440
A
Sbjct: 1465 TA 1466
>gi|182765478 RANBP2-like and GRIP domain containing 6 [Homo sapiens]
Length = 1765
Score = 33.9 bits (76), Expect = 0.30
Identities = 68/302 (22%), Positives = 120/302 (39%), Gaps = 58/302 (19%)
Query: 160 KDYEKYLAN-----IEQQHGNSGRNSESESN---KVAAETQSPSL-FGSTKLQQE----- 205
KD++ +L N E+++ SG + S+ K AE P+L + + L+++
Sbjct: 1202 KDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNAENTGPTLEWDNYDLREDALDDS 1261
Query: 206 -STFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTG 264
S+ H + +P +K ++ T S NF K S+ S + + +G
Sbjct: 1262 VSSSSVHASPLASSPVRKNLFRFDESTTGS---------NFSFKSALSLSKSPAKLNQSG 1312
Query: 265 FSFSPGNSSLFGKDTTQSKPVSSPF--PTKPLEGQAEGDSGECKGGDEEENDEPPKVVVT 322
S S+ TQ + + P PL E SGE
Sbjct: 1313 TSVGTDEESV----VTQEEERDGQYFEPVVPLPDLVEVSSGE------------------ 1350
Query: 323 EVKEEDAFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNILLN 379
+ E +S + +++ Y KD ++KE+GIG + L+ N++ ++++R D L + N
Sbjct: 1351 --ENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVL-KLCAN 1407
Query: 380 VLIPPNMPC-TRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKK 438
I P+M G V + + E+ + +R K + AD KI E K
Sbjct: 1408 HRITPDMSLQNMKGTERVWVWTACDFADGERKVE---HLAVRFKLQDVADSFKKIFDEAK 1464
Query: 439 DA 440
A
Sbjct: 1465 TA 1466
>gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]
Length = 369
Score = 33.9 bits (76), Expect = 0.30
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 4 EEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGRFSGF--GSGAGGKPLEGLS 61
E V K R + +R +G + F G G F G G G G + G+
Sbjct: 252 ERVKKAREEHERAQREEEARRQSGAQYGSFPGGFPGGMPGNFPGGMPGMGGGMPGMAGMP 311
Query: 62 NGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSNPK 104
N I S P +A + VAF +A N P + SNPK
Sbjct: 312 GLNEILSDPEVLAAMQDPEVMVAFQDVAQN-PANMSKYQSNPK 353
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 33.5 bits (75), Expect = 0.39
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 21 GFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGG 54
GF +GG F G G SG G F GFG GAGG
Sbjct: 114 GFGGGSGGGFGGGYG----SGFGGFGGFGGGAGG 143
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 21 GFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNN 65
G +GG++ G G SGGG G+G G+GG G G++
Sbjct: 511 GSRGGSGGSYGGGSG----SGGGSGGGYGGGSGGGHSGGSGGGHS 551
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 21 GFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGLSNG 63
G +GG + G G SGGG G+G G+G + G S+G
Sbjct: 549 GHSGGSGGNYGGGSG----SGGGSGGGYGGGSGSRGGSGGSHG 587
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 33.5 bits (75), Expect = 0.39
Identities = 41/124 (33%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 42 GGRFS-----GFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTL 96
GGR S G G G GG P G S T AP A+A AAA A + AA GPT
Sbjct: 7 GGRASCPPGVGVGPGTGGSP--GPSANAAATPAPGNAAAAAAA----AAAAAAAPGPTP- 59
Query: 97 VDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNC-----SVRDWIVKHVNTNP 151
P G Q + + A A G A ++ AA N +V++ N
Sbjct: 60 ----PAPPGPGTDAQAAGAERAEEAAGPGAAALQREAAYNWQASKPTVQERFAFLFNNEV 115
Query: 152 LCDL 155
LCD+
Sbjct: 116 LCDV 119
>gi|169162953 PREDICTED: RANBP2-like and GRIP domain containing 8
[Homo sapiens]
Length = 1765
Score = 33.1 bits (74), Expect = 0.51
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 29/215 (13%)
Query: 249 VDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTT--------QSKPVSSPFPTKPLE-GQAE 299
+D SV S SSV + + SP +LF D + +S S P K + G +
Sbjct: 1258 LDDSV--SSSSVHASPLASSPVRKNLFRFDESTTGSNFSFKSALSLSKSPAKLNQSGTSV 1315
Query: 300 GDSGECKGGDEEENDE---------PPKVVVTEVKE-EDAFYSKKCKLF-YKKD-NEFKE 347
G E EEE D P V V+ +E E +S + +++ Y KD ++KE
Sbjct: 1316 GTDEESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKE 1375
Query: 348 KGIGTLH-LKPTANQKTQLLVRADTNLGNILLNVLIPPNMPC-TRTGKNNVLIVCVPNPP 405
+GIG + L+ N++ ++++R D L + N I P+M G V + +
Sbjct: 1376 RGIGDIKILQNYDNKQVRIVMRRDQVL-KLCANHRITPDMSLQNMKGTERVWVWTACDFA 1434
Query: 406 IDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA 440
E+ + +R K + AD KI E K A
Sbjct: 1435 DGERKVE---HLAVRFKLQDVADSFKKIFDEAKTA 1466
>gi|23943882 serine/threonine kinase 33 [Homo sapiens]
Length = 514
Score = 33.1 bits (74), Expect = 0.51
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 179 NSESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKK---TDPSS 235
N ES E PS K Q + N T D ++K A EK+ T +
Sbjct: 404 NPESVEENTTEEKNKPSTEEKLKSYQPWGNVPDANYTSDEEEEKQSTAYEKQFPATSKDN 463
Query: 236 LGATSASFNFGKKVDSSVLGSLSSVPLT 263
S+SF K + + + G + P+T
Sbjct: 464 FDMCSSSFTSSKLLPAEIKGEMEKTPVT 491
>gi|168823443 RAD54-like 2 [Homo sapiens]
Length = 1467
Score = 33.1 bits (74), Expect = 0.51
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 30/124 (24%)
Query: 281 QSKPVSSPFPTKPLEGQAE-----GDSG---------------ECKGGDEEENDEPPKVV 320
Q K ++P PT PLE E G + G E+E +V+
Sbjct: 143 QRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEVI 202
Query: 321 VTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNV 380
EED + +D+E +EKG GT H+ NQ+ LG +L+N+
Sbjct: 203 ELSSGEEDTLHIVDSSESVSEDDEEEEKG-GT-HVNDVLNQRDA--------LGRVLVNL 252
Query: 381 LIPP 384
PP
Sbjct: 253 NHPP 256
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 32.7 bits (73), Expect = 0.67
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 8 KNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNIT 67
++RA + R E G+ G +G GGR G G G + + G G T
Sbjct: 56 RSRAAGSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRGRGRAPERVGGRGRGRG-T 114
Query: 68 SAPPFASAKAAADPKVAFGSLAANGPTTL 96
+AP A A + P A G++AA TTL
Sbjct: 115 AAPRAAPAARGSRPGPA-GTMAAGSITTL 142
>gi|68342038 CD34 antigen isoform a [Homo sapiens]
Length = 385
Score = 32.7 bits (73), Expect = 0.67
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 177 GRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSL 236
G S +N ET +PS GST L S HGN+ + + S
Sbjct: 47 GTFSNVSTNVSYQETTTPSTLGSTSLHPVSQ---HGNEATTNITETTVKFTSTSVITSVY 103
Query: 237 GATSASFNFGKKVDSSVLGSLSSV--PLTGF--SFSPGNSSLFGKDTTQSKPVSSPFPTK 292
G T++S V S+V + ++V P T S SPGN S D + + + PTK
Sbjct: 104 GNTNSSVQSQTSVISTVFTTPANVSTPETTLKPSLSPGNVS----DLSTTSTSLATSPTK 159
Query: 293 P 293
P
Sbjct: 160 P 160
>gi|4502661 CD34 antigen isoform b [Homo sapiens]
Length = 328
Score = 32.7 bits (73), Expect = 0.67
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 177 GRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSL 236
G S +N ET +PS GST L S HGN+ + + S
Sbjct: 47 GTFSNVSTNVSYQETTTPSTLGSTSLHPVSQ---HGNEATTNITETTVKFTSTSVITSVY 103
Query: 237 GATSASFNFGKKVDSSVLGSLSSV--PLTGF--SFSPGNSSLFGKDTTQSKPVSSPFPTK 292
G T++S V S+V + ++V P T S SPGN S D + + + PTK
Sbjct: 104 GNTNSSVQSQTSVISTVFTTPANVSTPETTLKPSLSPGNVS----DLSTTSTSLATSPTK 159
Query: 293 P 293
P
Sbjct: 160 P 160
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,664,503
Number of Sequences: 37866
Number of extensions: 948068
Number of successful extensions: 3595
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 3354
Number of HSP's gapped (non-prelim): 302
length of query: 440
length of database: 18,247,518
effective HSP length: 105
effective length of query: 335
effective length of database: 14,271,588
effective search space: 4780981980
effective search space used: 4780981980
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.