Guide to the Human Genome
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Name: CD34 Sequence: fasta or formatted (385aa) NCBI GI: 68342038
Description:

CD34 antigen isoform a

Referenced in:

Additional Host Defense Functions
Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [328aa] CD34 antigen isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         26           1
 C cysteine            1.8          7           1
 D aspartate           2.9         11           1
 E glutamate           5.5         21           2
 F phenylalanine       1.8          7           1
 G glycine             8.6         33           3
 H histidine           1.6          6           1
 I isoleucine          3.1         12           1
 K lysine              4.2         16           2
 L leucine            10.1         39           3
 M methionine          1.3          5           1
 N asparagine          4.4         17           2
 P proline             4.9         19           1
 Q glutamine           5.5         21           1
 R arginine            4.2         16           2
 S serine             13.0         50           3
 T threonine          11.9         46           3
 V valine              6.0         23           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.1          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD34 antigen isoform a 
CD34                  0.832   CD34 antigen isoform b 
LOC730474             0.040   PREDICTED: hypothetical protein, partial 
MUC17                 0.040   mucin 17 
MUC3B                 0.038   PREDICTED: mucin 3B, cell surface associated, parti...
MUC2                  0.037   mucin 2 precursor 
MUC3A                 0.034   PREDICTED: mucin 3A, cell surface associated, parti...
MUC3A                 0.034   PREDICTED: mucin 3A, intestinal 
LOC732156             0.034   PREDICTED: similar to Mucin-3A 
LOC100131251          0.034   PREDICTED: hypothetical protein 
LOC100294470          0.034   PREDICTED: hypothetical protein, partial 
LOC100131251          0.034   PREDICTED: hypothetical protein 
LOC730474             0.033   PREDICTED: hypothetical protein 
LOC100131514          0.033   PREDICTED: similar to hCG1747327, partial 
LOC100132635          0.033   PREDICTED: similar to mucin 5, partial 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC100294501          0.033   PREDICTED: hypothetical protein 
LOC100294249          0.033   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.033   PREDICTED: hypothetical protein 
LOC100294204          0.033   PREDICTED: hypothetical protein 
LOC100294136          0.033   PREDICTED: hypothetical protein 
LOC100294091          0.033   PREDICTED: hypothetical protein 
LOC730401             0.033   PREDICTED: hypothetical protein 
MUC5AC                0.030   mucin 5AC 
LOC100294236          0.030   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC5B                 0.030   mucin 5, subtype B, tracheobronchial 
MUC4                  0.029   mucin 4 isoform a 
CEP350                0.029   centrosome-associated protein 350 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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