NUP50 23895

Name: NUP50	Sequence: fasta or formatted (440aa)		NCBI GI: 24497447
Description: nucleoporin 50kDa isoform a		Referenced in: Nucleus and Nucleolus
Other entries for this name: alt prot [468aa] nucleoporin 50kDa isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 32 3 C cysteine 1.6 7 1 D aspartate 5.0 22 1 E glutamate 6.6 29 3 F phenylalanine 4.5 20 1 G glycine 8.9 39 3 H histidine 1.4 6 1 I isoleucine 2.7 12 1 K lysine 10.5 46 2 L leucine 8.0 35 2 M methionine 1.1 5 1 N asparagine 6.8 30 2 P proline 6.6 29 2 Q glutamine 2.7 12 2 R arginine 2.0 9 2 S serine 10.2 45 3 T threonine 6.4 28 2 V valine 6.4 28 3 W tryptophan 0.2 1 1 Y tyrosine 1.1 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleoporin 50kDa isoform a NUP50 1.000 nucleoporin 50kDa isoform b RANBP2 0.018 RAN binding protein 2 RGPD4 0.016 RANBP2-like and GRIP domain containing 4 RGPD1 0.014 RANBP2-like and GRIP domain containing 1 NUP214 0.012 nucleoporin 214kDa RGPD2 0.012 RANBP2-like and GRIP domain containing 2 NUPL1 0.012 nucleoporin like 1 isoform b KRT13 0.012 keratin 13 isoform b KRT13 0.012 keratin 13 isoform a DDX42 0.012 DEAD box polypeptide 42 protein DDX42 0.012 DEAD box polypeptide 42 protein UBR4 0.012 retinoblastoma-associated factor 600 NUPL1 0.011 nucleoporin like 1 isoform a PCLO 0.011 piccolo isoform 2 PCLO 0.011 piccolo isoform 1 ARID1B 0.011 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.011 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.011 AT rich interactive domain 1B (SWI1-like) isoform 3 ... RGPD5 0.011 RANBP2-like and GRIP domain containing 5 isoform 1 [... RGPD6 0.011 RANBP2-like and GRIP domain containing 6 ST13 0.011 heat shock 70kD protein binding protein KRT9 0.009 keratin 9 BTBD2 0.009 BTB (POZ) domain containing 2 RGPD8 0.009 PREDICTED: RANBP2-like and GRIP domain containing 8... STK33 0.009 serine/threonine kinase 33 RAD54L2 0.009 RAD54-like 2 FGF2 0.009 fibroblast growth factor 2 CD34 0.009 CD34 antigen isoform a CD34 0.009 CD34 antigen isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.