Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 242117971

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
         (390 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...   814   0.0  
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...   814   0.0  
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]        768   0.0  
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...   522   e-148
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe...   338   4e-93
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe...   338   4e-93
gi|4826974 RNA binding motif protein, Y-linked, family 1, member...   338   5e-93
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe...   338   6e-93
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe...   338   6e-93
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe...   337   8e-93
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa...   296   2e-80
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...   230   1e-60
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...   230   1e-60
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ...   167   2e-41
gi|4502847 cold inducible RNA binding protein [Homo sapiens]          124   2e-28
gi|5803137 RNA binding motif protein 3 [Homo sapiens]                 105   9e-23
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           99   9e-21
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          99   9e-21
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    86   6e-17
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    86   6e-17
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    86   6e-17
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    86   6e-17
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    86   6e-17
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     82   8e-16
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]          81   2e-15
gi|9558733 transformer-2 alpha [Homo sapiens]                          80   4e-15
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...    79   5e-15
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...    78   1e-14
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...    75   1e-13
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]          74   2e-13

>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score =  814 bits (2102), Expect = 0.0
 Identities = 390/390 (100%), Positives = 390/390 (100%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120

Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
           GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180

Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
           APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240

Query: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
           YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300

Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR 360
           PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR 360

Query: 361 DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
           DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY
Sbjct: 361 DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score =  814 bits (2102), Expect = 0.0
 Identities = 390/390 (100%), Positives = 390/390 (100%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120

Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
           GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180

Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
           APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240

Query: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
           YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300

Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR 360
           PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR 360

Query: 361 DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
           DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY
Sbjct: 361 DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score =  768 bits (1984), Expect = 0.0
 Identities = 372/391 (95%), Positives = 375/391 (95%), Gaps = 1/391 (0%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEADRPGKLFIGGLNTETNEKALE VFGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPRG   GRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120

Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
           GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGP PKRSAPSG VRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180

Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
           AP+SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240

Query: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
           YTYRDYGHSSSRDDYPSRGY DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAP TRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300

Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS-CDRVGRQERGLPPSVERGYPSS 359
           PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS  DRVGRQERGLPPS+ERGYP  
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP 360

Query: 360 RDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
           RDSYSSSSRGAPRG G GGSRSDRGGGRSRY
Sbjct: 361 RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391


>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score =  522 bits (1345), Expect = e-148
 Identities = 274/396 (69%), Positives = 299/396 (75%), Gaps = 10/396 (2%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEADRPGKLFIGGLN ET+EKALE  FGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           DAK AARDMNGKSLDGKAIKV QATKP+FE  R G PPPPRSRG PR     RGG GG R
Sbjct: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119

Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSS-SGMGG 179
             PSRGG  DDGGY+ +F++  SR P+P+KRGPPPR  GP PKR+APSG  RSS  GM G
Sbjct: 120 RSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRG 179

Query: 180 RAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR 239
           RA   RGRD Y GPPRREPLP RRD YL PRD+GYS++D YSSRDY   R+ R +AP P 
Sbjct: 180 RALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDY---REPRGFAPSPG 236

Query: 240 DYTYRDYGHSSSRDDYPSRGYGDRDGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPLTR 298
           +YT+RDYGHSS RDD P RGY DRDGY GRDRDY DH S GS+R+ +ESYG  R A   R
Sbjct: 237 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGR 296

Query: 299 GPPPSYGGSSRYDDYSS-SRDGYGGSRDSYSSS--RSDLYS-SCDRVGRQERGLPPSVER 354
           G PPSYGG  RY++Y   S D Y G RDSYSSS  RSD YS    RVGR +RGL  S+ER
Sbjct: 297 GTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMER 356

Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
           G P  RDSYS S    PRG G  G R +RGGGRSRY
Sbjct: 357 GCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392


>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
           [Homo sapiens]
          Length = 496

 Score =  338 bits (868), Expect = 4e-93
 Identities = 210/423 (49%), Positives = 256/423 (60%), Gaps = 51/423 (12%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
           DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R  PP   R+R P     + RG  GGT
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
           RG  PS+ GH+DDGGY+ +  MS SRG +PVKRGP  RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179

Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
            + P+S+ R++YG PPRR  + S R+  +S R DGY+T D     ++PS ++TRDYAPP 
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235

Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
           R Y YRD GH S+RD++ SRGY +       RDY+    G +YRD        SY   Y 
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294

Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
           N RS+  TR   PPS       YG S R++ YS     +  SR+                
Sbjct: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354

Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
              S+    S  YS  D  G +  G   S      S RD+     +S GAP   GP    
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413

Query: 377 GGS 379
           GGS
Sbjct: 414 GGS 416



 Score =  165 bits (418), Expect = 6e-41
 Identities = 123/276 (44%), Positives = 154/276 (55%), Gaps = 19/276 (6%)

Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
           PPSRG    D G+S N +  SSRG    +     R   P  +  A     R         
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287

Query: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
             SRG R+       RE  P SR   Y   RD G+S + +SYS   R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344

Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
           P RDY YRDYGHSS  D++ SRGY   DGYG    RD+S+H SG SYRD+ + YG S  A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
           P  RGP  SYGGS+ +  YS++RD YG S +SYSS     Y   + V R+++  PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462

Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
             P  R++Y SSS  A    G G SRS++G   SRY
Sbjct: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496


>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
           [Homo sapiens]
          Length = 496

 Score =  338 bits (868), Expect = 4e-93
 Identities = 210/423 (49%), Positives = 256/423 (60%), Gaps = 51/423 (12%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
           DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R  PP   R+R P     + RG  GGT
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
           RG  PS+ GH+DDGGY+ +  MS SRG +PVKRGP  RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179

Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
            + P+S+ R++YG PPRR  + S R+  +S R DGY+T D     ++PS ++TRDYAPP 
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235

Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
           R Y YRD GH S+RD++ SRGY +       RDY+    G +YRD        SY   Y 
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294

Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
           N RS+  TR   PPS       YG S R++ YS     +  SR+                
Sbjct: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354

Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
              S+    S  YS  D  G +  G   S      S RD+     +S GAP   GP    
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413

Query: 377 GGS 379
           GGS
Sbjct: 414 GGS 416



 Score =  162 bits (409), Expect = 6e-40
 Identities = 122/276 (44%), Positives = 153/276 (55%), Gaps = 19/276 (6%)

Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
           PPSRG    D G+S N +  SSRG    +     R   P  +  A     R         
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287

Query: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
             SRG R+       RE  P SR   Y   RD G+S + +SYS   R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344

Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
           P RDY YRDYGHSS  D++ SRGY   DGYG    RD+S+H SG SYRD+ + YG S  A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
           P  RGP  SYGGS+ +  YS++RD YG S +SYSS     Y   + V R+++  PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462

Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
             P  R++  SSS  A    G G SRS++G   SRY
Sbjct: 463 VLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496


>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
           [Homo sapiens]
          Length = 496

 Score =  338 bits (867), Expect = 5e-93
 Identities = 210/423 (49%), Positives = 255/423 (60%), Gaps = 51/423 (12%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
           DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R  PP   R+R P     + RG  GGT
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
           RG  PS  GH+DDGGY+ +  MS SRG +PVKRGP  RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179

Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
            + P+S+ R++YG PPRR  + S R+  +S R DGY+T D     ++PS ++TRDYAPP 
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235

Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
           R Y YRD GH S+RD++ SRGY +       RDY+    G +YRD        SY   Y 
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294

Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
           N RS+  TR   PPS       YG S R++ YS     +  SR+                
Sbjct: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354

Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
              S+    S  YS  D  G +  G   S      S RD+     +S GAP   GP    
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413

Query: 377 GGS 379
           GGS
Sbjct: 414 GGS 416



 Score =  162 bits (409), Expect = 6e-40
 Identities = 122/276 (44%), Positives = 153/276 (55%), Gaps = 19/276 (6%)

Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
           PPSRG    D G+S N +  SSRG    +     R   P  +  A     R         
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287

Query: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
             SRG R+       RE  P SR   Y   RD G+S + +SYS   R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344

Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
           P RDY YRDYGHSS  D++ SRGY   DGYG    RD+S+H SG SYRD+ + YG S  A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
           P  RGP  SYGGS+ +  YS++RD YG S +SYSS     Y   + V R+++  PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462

Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
             P  R++  SSS  A    G G SRS++G   SRY
Sbjct: 463 VLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496


>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
           [Homo sapiens]
          Length = 496

 Score =  338 bits (866), Expect = 6e-93
 Identities = 210/423 (49%), Positives = 255/423 (60%), Gaps = 51/423 (12%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
           DAK+AA+DMNG SL GKAIKVEQA KPSF+ G R  PP   R+R P     + RG SGGT
Sbjct: 60  DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119

Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
           RG  PS  GH+DDGGY+ +  MS SRG +PVKRGP  RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179

Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
            + P+S+ R++YG PPRR  + S R+  +S R DGY+T D     ++PS ++TRDYAPP 
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235

Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
           R Y YRD GH S+RD++ SRGY +       RDY+    G +YRD        SY   Y 
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294

Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
           N RS+  TR   PPS       YG S R++ YS     +  SR+                
Sbjct: 295 NHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354

Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
              S+    S  YS  D  G +  G   S      S RD+     +S GAP   GP    
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413

Query: 377 GGS 379
           GGS
Sbjct: 414 GGS 416



 Score =  165 bits (418), Expect = 6e-41
 Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 19/276 (6%)

Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
           PPSRG    D G+S N +  SSRG    +     R   P  +  A     R         
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287

Query: 182 PLSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
             SRG  ++      R    PSR   Y   RD G+S + +SYS   R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344

Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
           P RDY YRDYGHSS  D++ SRGY   DGYG    RD+S+H SG SYRD+ + YG S  A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
           P  RGP  SYGGS+ +  YS++RD YG S +SYSS     Y   + V R+++  PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462

Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
             P  R++Y SSS  A    G G SRS++G   SRY
Sbjct: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496


>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
           [Homo sapiens]
          Length = 496

 Score =  338 bits (866), Expect = 6e-93
 Identities = 210/423 (49%), Positives = 255/423 (60%), Gaps = 51/423 (12%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
           DAK+AA+DMNG SL GKAIKVEQA KPSF+ G R  PP   R+R P     + RG SGGT
Sbjct: 60  DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119

Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
           RG  PS  GH+DDGGY+ +  MS SRG +PVKRGP  RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179

Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
            + P+S+ R++YG PPRR  + S R+  +S R DGY+T D     ++PS ++TRDYAPP 
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235

Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
           R Y YRD GH S+RD++ SRGY +       RDY+    G +YRD        SY   Y 
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294

Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
           N RS+  TR   PPS       YG S R++ YS     +  SR+                
Sbjct: 295 NHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354

Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
              S+    S  YS  D  G +  G   S      S RD+     +S GAP   GP    
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413

Query: 377 GGS 379
           GGS
Sbjct: 414 GGS 416



 Score =  165 bits (418), Expect = 6e-41
 Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 19/276 (6%)

Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
           PPSRG    D G+S N +  SSRG    +     R   P  +  A     R         
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287

Query: 182 PLSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
             SRG  ++      R    PSR   Y   RD G+S + +SYS   R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344

Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
           P RDY YRDYGHSS  D++ SRGY   DGYG    RD+S+H SG SYRD+ + YG S  A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
           P  RGP  SYGGS+ +  YS++RD YG S +SYSS     Y   + V R+++  PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462

Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
             P  R++Y SSS  A    G G SRS++G   SRY
Sbjct: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496


>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
           [Homo sapiens]
          Length = 496

 Score =  337 bits (865), Expect = 8e-93
 Identities = 190/345 (55%), Positives = 233/345 (67%), Gaps = 25/345 (7%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
           DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R  PP   R+R P     + RG  GGT
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
           RG  PS+ GH+DDGGY+ +  MS SRG +PVKRGP  RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179

Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
            + P+S+ R++YG PPRR  + S R+  +S R DGY+T D     ++PS ++TRDYAPP 
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235

Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
           R Y YRD GH S+RD++ SRGY +       RDY+    G +YRD        SY   Y 
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294

Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRDS 326
           N RS+  TR   PPS       YG S R++ YS     +  SR++
Sbjct: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRET 339



 Score =  160 bits (406), Expect = 1e-39
 Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 19/276 (6%)

Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
           PPSRG    D G+S N +  SSRG    +     R   P  +  A     R         
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287

Query: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
             SRG R+       RE  P SR   Y   RD G+S + +SYS   R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344

Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
           P RDY YRDYGH SS D++ SRGY   DGYG    RD+S+H SG SYRD+ + YG +  A
Sbjct: 345 PHRDYAYRDYGH-SSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGA 403

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
           P  RGP  SYGGS+ +  YS++RD YG S +SYSS     Y   + V R+++  PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462

Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
             P  R++  SSS  A    G G SRS++G   SRY
Sbjct: 463 VLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496


>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
           sapiens]
          Length = 1067

 Score =  296 bits (758), Expect = 2e-80
 Identities = 188/412 (45%), Positives = 224/412 (54%), Gaps = 45/412 (10%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           M+EADRP KLFIGGLN +T+EKAL+  FGKYG I++V L+KDR+TNKSRGFAFVTFESPA
Sbjct: 1   MMEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           DAK AARDMNGK LDGKAI V Q  KP+F+  R   PP P S    R     RGG    +
Sbjct: 61  DAKAAARDMNGKYLDGKAIMVAQTIKPAFKSSR-WVPPTPGSGSRSRFSHRTRGGGSSPQ 119

Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRS-GGPSPKRSAPSGLVRS-SSGMG 178
            PPS+G   D  GY+  F++   R P+P KRGPPPR    P  KR+ PS L  S   GM 
Sbjct: 120 RPPSQGRPDDGRGYAGYFDLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGCGMR 179

Query: 179 GRAPLSRGRDSY--------GGPPRREPLPSRRDVYLSPRDDGYSTK-------DSYSS- 222
           G+AP   G+D Y         GPP +  +P  R         G   K       D YS  
Sbjct: 180 GKAPTVSGQDGYSGLQPRRWAGPPHKRAVP--RSSLARIGGSGMPGKAPAVWGQDGYSGP 237

Query: 223 ---RDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGY-GRDRDYSDHPSG 278
                 P  RD  D+ P  RDY+ R YGHSS  D  P RG G+++GY GRD +Y+DHPS 
Sbjct: 238 RVREPLPPCRDPGDFVPALRDYSRRYYGHSSVPDYRPLRGDGNQNGYRGRDHEYTDHPSK 297

Query: 279 GSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC 338
           GSYR+  +SYG    A    G PPSYGG  RY++Y       G S D+ S          
Sbjct: 298 GSYREPLKSYGGPCGAAPVWGTPPSYGGGCRYEEYQ------GNSPDACSE--------- 342

Query: 339 DRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
              GR    LP  +   Y  SRD    +  G    +  G SRSDR G    Y
Sbjct: 343 ---GRSSEALPVVLPDAY--SRDHSPKAYSGGRSSSSNGYSRSDRYGEEGCY 389



 Score =  103 bits (257), Expect = 3e-22
 Identities = 110/335 (32%), Positives = 137/335 (40%), Gaps = 46/335 (13%)

Query: 88   SFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGGHMD--DGGYSMNFNMSSSRG 145
            S +    G  P   S G      + R G GG R    RG  +D   GG S N   + S G
Sbjct: 747  SLDANSSGRLPDAYSGGHDSSSRSHRYGGGG-RYEEYRGRSLDANSGGRSPN---AYSGG 802

Query: 146  PLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAP--LSRGRDS----------YGGP 193
                 R  P R GG   +    S      +  GG +P   S GRDS          YGG 
Sbjct: 803  HNSSSRNDPCRGGGRYEENRGHS----LDANSGGHSPNAYSGGRDSSSNSYDRSHRYGGG 858

Query: 194  PRREPLPSR-RDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSR 252
               E    R  D +   R     + D Y+   Y   RD+   +    D+    YG     
Sbjct: 859  GHYEEYRGRSHDTHSRGRSPDAHSGDHYTEA-YSRGRDSFSNSYGRSDH----YGRGGCY 913

Query: 253  DDYPSRGYGDRDGYGRDRDYSDHPSGGSYR----DSYESY---------GNSRSAPLTRG 299
            ++Y  R      G GR  + S++  G S+R      YE Y         G   S+  + G
Sbjct: 914  EEYQGRSPNAYGG-GRGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAHSGGRDSSIKSYG 972

Query: 300  PPPSYGGSSRYDDYSSSR-DGYGGSRDSYSSS--RSDLYS-SCDRVGRQERGLPPSVERG 355
                YGG   Y++Y  S  D Y G  D  S+S  RSD YS   DRVGR +RGLP  +E G
Sbjct: 973  LSDRYGGGGHYEEYQGSLPDAYSGDHDRSSNSYGRSDRYSRGRDRVGRPDRGLPLPMETG 1032

Query: 356  YPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
             P   DSYS S    PRG G  G R +RG GRSRY
Sbjct: 1033 SPPLHDSYSRSGCRVPRGGGRQGGRFERGEGRSRY 1067



 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 71/246 (28%), Positives = 92/246 (37%), Gaps = 61/246 (24%)

Query: 178 GGRAP--LSRGRDS------YGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSR 229
           GGR+P   S G DS      YGG  R E    R    L   + G  + D+YS     SS+
Sbjct: 643 GGRSPDAYSGGHDSSGQSNCYGGGGRYEEYRGR----LLDANSGGRSPDAYSGGHDSSSQ 698

Query: 230 DTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYG-DRDGYGRDRD-YSDHPSGGSYRDSYES 287
             R             YG     ++Y  RG+  D +  GR  D YS      S  D Y  
Sbjct: 699 SNR-------------YGGGGRYEEY--RGHSLDANSGGRSPDTYSRGHDSSSQSDHYGG 743

Query: 288 YGNSRSAPLTRGPPPS-------------YGGSSRYDDY---SSSRDGYGGSRDSY---- 327
            G S  A  +   P +             YGG  RY++Y   S   +  G S ++Y    
Sbjct: 744 GGRSLDANSSGRLPDAYSGGHDSSSRSHRYGGGGRYEEYRGRSLDANSGGRSPNAYSGGH 803

Query: 328 -SSSRSDLYSSCDRVGRQERGLPPSVE--------RGYPSSRDSYSSSSRGAPRGAGPGG 378
            SSSR+D    C   GR E     S++          Y   RDS S+S   + R  G G 
Sbjct: 804 NSSSRND---PCRGGGRYEENRGHSLDANSGGHSPNAYSGGRDSSSNSYDRSHRYGGGGH 860

Query: 379 SRSDRG 384
               RG
Sbjct: 861 YEEYRG 866



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 99/355 (27%), Positives = 123/355 (34%), Gaps = 87/355 (24%)

Query: 103 RGPPRGFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRG----PLPV--------K 150
           R P + +G   G +     PPS GG      Y  N   + S G     LPV         
Sbjct: 301 REPLKSYGGPCGAAPVWGTPPSYGGGCRYEEYQGNSPDACSEGRSSEALPVVLPDAYSRD 360

Query: 151 RGPPPRSGGPSPKRSAPSGLVRSS--------SGMGGRAP--LSRGRDS----------Y 190
             P   SGG S   S+ +G  RS             GR+P   S GR+S          Y
Sbjct: 361 HSPKAYSGGRS---SSSNGYSRSDRYGEEGCYEEYRGRSPDAHSGGRNSSSNSYGQSHHY 417

Query: 191 GGPPRREPLPSRR----------DVYLSPR-DDGYSTKDSYSS-----------RDYPS- 227
           GG  R E    R           D +   R DD YS     SS            +Y   
Sbjct: 418 GGEGRYEEYRGRSHEARSGGRSTDAHSRGRSDDAYSGGHDSSSWSDCCGGGGRYEEYQGR 477

Query: 228 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYS-DHPSGGSYRDSYE 286
           S D       P  Y+    GH +S     S  YG    Y  +R +S D  SGG   D++ 
Sbjct: 478 SLDANSGGCSPEAYSG---GHDNSSW---SDRYGVGGHYEENRGHSLDANSGGRSPDTHS 531

Query: 287 SYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGG--SRDSYSSSRSDLYSSCDRVG-- 342
             G   S+  + G    YGG  RY+    S D + G  S D+YS    D  S  +R G  
Sbjct: 532 --GGHSSSSNSYGQSHRYGGEGRYEYRGRSHDAHSGGCSADAYSGGH-DSSSQSNRYGGG 588

Query: 343 ---RQERGLPPSVERG------YPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRS 388
               + RG       G      Y    DS S S R        GG R +   GRS
Sbjct: 589 GCYEEYRGRSLDANSGGRSPNAYSGGHDSSSWSHRYG------GGGRYEEYRGRS 637


>gi|239752336 PREDICTED: similar to RNA binding motif protein,
           X-linked [Homo sapiens]
          Length = 138

 Score =  230 bits (587), Expect = 1e-60
 Identities = 113/131 (86%), Positives = 117/131 (89%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           M EADR GK FIGGLNTETN+KALE VFGKYG+IVEV L+KD ETNKSRGFAF+TFE PA
Sbjct: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPR    GRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120

Query: 121 GPPSRGGHMDD 131
            PPSRGGHMDD
Sbjct: 121 EPPSRGGHMDD 131


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
           sapiens]
          Length = 138

 Score =  230 bits (587), Expect = 1e-60
 Identities = 113/131 (86%), Positives = 117/131 (89%)

Query: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
           M EADR GK FIGGLNTETN+KALE VFGKYG+IVEV L+KD ETNKSRGFAF+TFE PA
Sbjct: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPR    GRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120

Query: 121 GPPSRGGHMDD 131
            PPSRGGHMDD
Sbjct: 121 EPPSRGGHMDD 131


>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
           sapiens]
          Length = 196

 Score =  167 bits (422), Expect = 2e-41
 Identities = 85/99 (85%), Positives = 88/99 (88%), Gaps = 2/99 (2%)

Query: 293 SAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC-DRVGRQERGLPPS 351
           S+  TR PP SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS  D+VGRQERGLPPS
Sbjct: 99  SSTYTRAPP-SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPS 157

Query: 352 VERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
           +ERGYP  RDSYSSSSRG PRG G GGSRSDRGGGRSRY
Sbjct: 158 MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 178 GGRAPL------SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK-DSYSSRDYPSSRD 230
           G R PL      +R   SYGG  R +   S RD Y   RD   S++ D YSS      R 
Sbjct: 91  GNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQ 150

Query: 231 TRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGS 280
            R   P        + G+   RD Y S   G   G GR    SD   G S
Sbjct: 151 ERGLPPS------MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRS 194



 Score = 35.8 bits (81), Expect = 0.068
 Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 20/70 (28%)

Query: 58  SPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPR------SRGPPRGFGA 111
           S +D   + RD  G+         E+   PS ERG     PPPR      SRG PRG   
Sbjct: 135 SRSDLYSSGRDQVGRQ--------ERGLPPSMERGY----PPPRDSYSSSSRGTPRG--G 180

Query: 112 GRGGSGGTRG 121
           GRGGS   RG
Sbjct: 181 GRGGSRSDRG 190


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score =  124 bits (310), Expect = 2e-28
 Identities = 80/168 (47%), Positives = 99/168 (58%), Gaps = 13/168 (7%)

Query: 4   ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
           A   GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+  DAK
Sbjct: 2   ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 64  DAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR-GFGAGRGGS--GGTR 120
           DA   MNGKS+DG+ I+V+QA K S  R R         RG  R G G GRG S  GG R
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121

Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPS 168
           G          GGY  + +  SSR           +SGG S + S  S
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRS----------QSGGYSDRSSGGS 159



 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 245 DYGHSSSRDDYPSRGYGDRDGYGRDRD----YSDHPSGGSYRDSYESY 288
           D G+  +R +  S GYG    Y   R     YSD  SGGSYRDSY+SY
Sbjct: 120 DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSY 167



 Score = 33.9 bits (76), Expect = 0.26
 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 19/99 (19%)

Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSY 327
           R R Y    +GG     +   G  R    +RG      G +R++  S    GYGGSRD Y
Sbjct: 89  RSRGYRGGSAGGR---GFFRGGRGRGRGFSRGGGDRGYGGNRFESRSG---GYGGSRDYY 142

Query: 328 SS-SRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSS 365
           SS S+S  YS     G             Y  S DSY++
Sbjct: 143 SSRSQSGGYSDRSSGG------------SYRDSYDSYAT 169


>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
          Length = 157

 Score =  105 bits (261), Expect = 9e-23
 Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 3/139 (2%)

Query: 8   GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
           GKLF+GGLN  T+E+ALE  F  +G I EV+++KDRET +SRGF F+TF +P  A  A R
Sbjct: 6   GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65

Query: 68  DMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSR-G 126
            MNG+SLDG+ I+V+ A K +  RG  G       RG     G G  G G  R   SR G
Sbjct: 66  AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123

Query: 127 GHMDDGGYSMNFNMSSSRG 145
           G+    G S ++N  +  G
Sbjct: 124 GYGYGYGRSRDYNGRNQGG 142



 Score = 38.9 bits (89), Expect = 0.008
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 8/50 (16%)

Query: 245 DYGHSSSRDDYPSRGYGDRDGYGRDRDYS-------DHPSGGSYRDSYES 287
           D G+ S R  Y SR  G   GYGR RDY+       D  SGG+YRD+Y++
Sbjct: 109 DQGYGSGRY-YDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN 157



 Score = 32.3 bits (72), Expect = 0.75
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 23/75 (30%)

Query: 257 SRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSR--YDDYS 314
           SRG GD+ GYG  R Y   P G  Y      YG SR           Y G ++  YD YS
Sbjct: 104 SRGGGDQ-GYGSGRYYDSRPGGYGY-----GYGRSR----------DYNGRNQGGYDRYS 147

Query: 315 SSRDGYGGSRDSYSS 329
                 G  RD+Y +
Sbjct: 148 G-----GNYRDNYDN 157


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 124/395 (31%), Positives = 144/395 (36%), Gaps = 62/395 (15%)

Query: 2   VEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
           V  D+ G+ F      +TN+K  + +   Y          D++T K +G A V+F+ P  
Sbjct: 242 VSTDQVGEFFKQIGIIKTNKKTGKPMINLY---------TDKDTGKPKGEATVSFDDPPS 292

Query: 62  AKDAARDMNGKSLDGKAIKVEQAT-KPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           AK A    +GK   G  IKV  AT +P F RG  G     R RG  R    GRGG  G  
Sbjct: 293 AKAAIDWFDGKEFHGNIIKVSFATRRPEFMRG-GGSGGGRRGRGGYR----GRGGFQGRG 347

Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
           G P  G  +       N N +        +R    +   P P+ S PSG      G GG 
Sbjct: 348 GDPKSGDWVCPNPSCGNMNFA--------RRNSCNQCNEPRPEDSRPSGGDFRGRGYGGE 399

Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
               RGR   GG          R  Y   R  G    D  S   Y   R    Y     D
Sbjct: 400 RGY-RGRGGRGGD---------RGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYG---GD 446

Query: 241 YTYRDYGHSSSRDDYPSRGY-GDR-DGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTR 298
            +   YG           GY GDR  GYG DR       GG Y      YG  R      
Sbjct: 447 RSGGGYGGDR------GGGYGGDRGGGYGGDR-------GGGYGGDRGGYGGDRGGGY-G 492

Query: 299 GPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPS 358
           G    YGG      Y   R GYGG R  Y   RS      DR G    G   S   GY  
Sbjct: 493 GDRGGYGGDR--GGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRS--GGYGG 548

Query: 359 SRDSYSSSSRGAPRGAGPGGSRSDRG---GGRSRY 390
            R   S    G  RG G GG R   G   GGR+ Y
Sbjct: 549 DR---SGGGYGGDRGGGYGGDRGGYGGKMGGRNDY 580



 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 46/185 (24%), Positives = 66/185 (35%), Gaps = 43/185 (23%)

Query: 213 GYSTKDSYSSRDYPSSRDTRD--YAPPPRDYTYRDYGHSSSRDDYPSRG----------Y 260
           GYS+     S+ Y    + +   Y+  P    Y + G   + +   S+G          Y
Sbjct: 52  GYSSYGQSYSQSYGGYENQKQSSYSQQP----YNNQGQQQNMESSGSQGGRAPSYDQPDY 107

Query: 261 GDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGY 320
           G +D Y +   Y  H   GSY D   +Y                    ++D YS ++  Y
Sbjct: 108 GQQDSYDQQSGYDQHQ--GSY-DEQSNY------------------DQQHDSYSQNQQSY 146

Query: 321 GGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSR 380
              R++YS    D      R G   RG   S  +G    R  Y    RG   G+  G   
Sbjct: 147 HSQRENYSHHTQDDRRDVSRYGEDNRGYGGS--QGGGRGRGGYDKDGRGPMTGSSGG--- 201

Query: 381 SDRGG 385
            DRGG
Sbjct: 202 -DRGG 205



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 75/343 (21%), Positives = 108/343 (31%), Gaps = 91/343 (26%)

Query: 112 GRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGL- 170
           G  G G      S  G   D  Y  N++  SS G    +       G  + K+S+ S   
Sbjct: 24  GSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYG----QSYSQSYGGYENQKQSSYSQQP 79

Query: 171 ---------VRSSSGMGGRAPLSRG-----RDSY----------GGPPRREPLPSRRDVY 206
                    + SS   GGRAP         +DSY          G    +     + D Y
Sbjct: 80  YNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDSY 139

Query: 207 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGY 266
              +   +S +++YS       RD   Y    R       G+  S+     RG  D+DG 
Sbjct: 140 SQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNR-------GYGGSQGGGRGRGGYDKDGR 192

Query: 267 GRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRD-------- 318
           G         S G  R  ++++G  R           YG  +  D  S + D        
Sbjct: 193 GPMTG-----SSGGDRGGFKNFGGHR----------DYGPRTDADSESDNSDNNTIFVQG 237

Query: 319 -GYGGSRDSYSS--SRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS----SSSRGA- 370
            G G S D       +  +  +  + G+    L    + G P    + S     S++ A 
Sbjct: 238 LGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAI 297

Query: 371 ------------------------PRGAGPGGSRSDRGGGRSR 389
                                    RG G GG R  RGG R R
Sbjct: 298 DWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGR 340



 Score = 33.1 bits (74), Expect = 0.44
 Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 271 DYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS 330
           D   +   G  + SY +YGN               GS  Y   S S  GYG + DS    
Sbjct: 3   DSGSYGQSGGEQQSYSTYGNP--------------GSQGYGQASQSYSGYGQTTDSSYGQ 48

Query: 331 RSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRS 388
               YSS  +   Q  G       GY + + S  S      +G       S   GGR+
Sbjct: 49  NYSGYSSYGQSYSQSYG-------GYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRA 99


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 124/395 (31%), Positives = 144/395 (36%), Gaps = 62/395 (15%)

Query: 2   VEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
           V  D+ G+ F      +TN+K  + +   Y          D++T K +G A V+F+ P  
Sbjct: 245 VSTDQVGEFFKQIGIIKTNKKTGKPMINLY---------TDKDTGKPKGEATVSFDDPPS 295

Query: 62  AKDAARDMNGKSLDGKAIKVEQAT-KPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
           AK A    +GK   G  IKV  AT +P F RG  G     R RG  R    GRGG  G  
Sbjct: 296 AKAAIDWFDGKEFHGNIIKVSFATRRPEFMRG-GGSGGGRRGRGGYR----GRGGFQGRG 350

Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
           G P  G  +       N N +        +R    +   P P+ S PSG      G GG 
Sbjct: 351 GDPKSGDWVCPNPSCGNMNFA--------RRNSCNQCNEPRPEDSRPSGGDFRGRGYGGE 402

Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
               RGR   GG          R  Y   R  G    D  S   Y   R    Y     D
Sbjct: 403 RGY-RGRGGRGGD---------RGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYG---GD 449

Query: 241 YTYRDYGHSSSRDDYPSRGY-GDR-DGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTR 298
            +   YG           GY GDR  GYG DR       GG Y      YG  R      
Sbjct: 450 RSGGGYGGDR------GGGYGGDRGGGYGGDR-------GGGYGGDRGGYGGDRGGGY-G 495

Query: 299 GPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPS 358
           G    YGG      Y   R GYGG R  Y   RS      DR G    G   S   GY  
Sbjct: 496 GDRGGYGGDR--GGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRS--GGYGG 551

Query: 359 SRDSYSSSSRGAPRGAGPGGSRSDRG---GGRSRY 390
            R   S    G  RG G GG R   G   GGR+ Y
Sbjct: 552 DR---SGGGYGGDRGGGYGGDRGGYGGKMGGRNDY 583



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 52/199 (26%), Positives = 69/199 (34%), Gaps = 29/199 (14%)

Query: 206 YLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDR-- 263
           Y +P   GY      +S+ Y     T D +       Y  YG S S       GY ++  
Sbjct: 20  YGNPGSQGYGQ----ASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQ 75

Query: 264 --------DGYGRDRDYSDHPSGGSYRDSYES--YGNSRSAPLTRGPPP---SYGGSSRY 310
                   +  G+ ++     S G    SY+   YG   S     G      SY   S Y
Sbjct: 76  SSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNY 135

Query: 311 DD----YSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSS 366
           D     YS ++  Y   R++YS    D      R G   RG   S  +G    R  Y   
Sbjct: 136 DQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGS--QGGGRGRGGYDKD 193

Query: 367 SRGAPRGAGPGGSRSDRGG 385
            RG   G+  G    DRGG
Sbjct: 194 GRGPMTGSSGG----DRGG 208



 Score = 35.8 bits (81), Expect = 0.068
 Identities = 77/344 (22%), Positives = 110/344 (31%), Gaps = 90/344 (26%)

Query: 112 GRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGG-PSPKRSAPSGL 170
           G  G G      S  G   D  Y  N++  SS G    + G     GG  + K+S+ S  
Sbjct: 24  GSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQS--QSGYSQSYGGYENQKQSSYSQQ 81

Query: 171 ----------VRSSSGMGGRAPLSRG-----RDSY----------GGPPRREPLPSRRDV 205
                     + SS   GGRAP         +DSY          G    +     + D 
Sbjct: 82  PYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDS 141

Query: 206 YLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDG 265
           Y   +   +S +++YS       RD   Y    R       G+  S+     RG  D+DG
Sbjct: 142 YSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNR-------GYGGSQGGGRGRGGYDKDG 194

Query: 266 YGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRD------- 318
            G         S G  R  ++++G  R           YG  +  D  S + D       
Sbjct: 195 RGPMTG-----SSGGDRGGFKNFGGHR----------DYGPRTDADSESDNSDNNTIFVQ 239

Query: 319 --GYGGSRDSYSS--SRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS----SSSRGA 370
             G G S D       +  +  +  + G+    L    + G P    + S     S++ A
Sbjct: 240 GLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAA 299

Query: 371 -------------------------PRGAGPGGSRSDRGGGRSR 389
                                     RG G GG R  RGG R R
Sbjct: 300 IDWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGR 343


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)

Query: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
           LF+  L T   E+ LE  F ++G++  V  +KD        +AFV FE    A  A  +M
Sbjct: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296

Query: 70  NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
           NGK ++G+ I++  A  P  +R                     PPPR   P RG G G G
Sbjct: 297 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 355

Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
           G GG   PP                    RGG+ D     D GY++         RG  P
Sbjct: 356 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415

Query: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
             RG   PPPR      +R AP G  R S  G GG A   RGR S G    R       +
Sbjct: 416 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 470

Query: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
           V    + DGY+  DS      + +++ S    +       DY+  +YG+++   ++    
Sbjct: 471 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 529

Query: 260 YGDR 263
           YG +
Sbjct: 530 YGQQ 533



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 52/156 (33%), Positives = 53/156 (33%), Gaps = 47/156 (30%)

Query: 234 YAPPPR-DYTYRDYGHSSSRDDY--PSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGN 290
           Y PPPR     R  G    R  Y  P   YG  D Y     Y  H   G Y D Y  YG 
Sbjct: 338 YHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPY--YG- 394

Query: 291 SRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPP 350
                              YDD  + R G GG                   GR  RG PP
Sbjct: 395 -------------------YDDGYAVR-GRGG-------------------GRGGRGAPP 415

Query: 351 SVE-RGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGG 385
               RG P  R     S RGAP G  P GSR  RGG
Sbjct: 416 PPRGRGAPPPRGRAGYSQRGAPLGP-PRGSRGGRGG 450



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
           R   Y DY  H   R   P RG G    R GYG   DY        Y D Y+ Y      
Sbjct: 329 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 382

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
               G    Y G   YDD  + R G GG R    +              R G  +RG P 
Sbjct: 383 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 438

Query: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
              RG        S   RG P    RG G  GSR +RGG
Sbjct: 439 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 469



 Score = 36.2 bits (82), Expect = 0.052
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 9   KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
           ++F+G +  +  E  L  +F K G I ++ L+ D  + ++RG+AF+TF     A++A +
Sbjct: 65  EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123



 Score = 32.0 bits (71), Expect = 0.98
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 9   KLFIGGL-NTETNEKALET---VFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAK 63
           +LF+G +   +T E  LE    V G    +V+V+L  +  +  K+RGF F+ +E    A 
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 205

Query: 64  DAARD-MNGK-SLDGKAIKVEQA 84
            A R  M+GK  + G  + VE A
Sbjct: 206 QARRRLMSGKVKVWGNVVTVEWA 228


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)

Query: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
           LF+  L T   E+ LE  F ++G++  V  +KD        +AFV FE    A  A  +M
Sbjct: 346 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 397

Query: 70  NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
           NGK ++G+ I++  A  P  +R                     PPPR   P RG G G G
Sbjct: 398 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 456

Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
           G GG   PP                    RGG+ D     D GY++         RG  P
Sbjct: 457 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 516

Query: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
             RG   PPPR      +R AP G  R S  G GG A   RGR S G    R       +
Sbjct: 517 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 571

Query: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
           V    + DGY+  DS      + +++ S    +       DY+  +YG+++   ++    
Sbjct: 572 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 630

Query: 260 YGDR 263
           YG +
Sbjct: 631 YGQQ 634



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 52/156 (33%), Positives = 53/156 (33%), Gaps = 47/156 (30%)

Query: 234 YAPPPR-DYTYRDYGHSSSRDDY--PSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGN 290
           Y PPPR     R  G    R  Y  P   YG  D Y     Y  H   G Y D Y  YG 
Sbjct: 439 YHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPY--YG- 495

Query: 291 SRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPP 350
                              YDD  + R G GG                   GR  RG PP
Sbjct: 496 -------------------YDDGYAVR-GRGG-------------------GRGGRGAPP 516

Query: 351 SVE-RGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGG 385
               RG P  R     S RGAP G  P GSR  RGG
Sbjct: 517 PPRGRGAPPPRGRAGYSQRGAPLGP-PRGSRGGRGG 551



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
           R   Y DY  H   R   P RG G    R GYG   DY        Y D Y+ Y      
Sbjct: 430 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 483

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
               G    Y G   YDD  + R G GG R    +              R G  +RG P 
Sbjct: 484 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 539

Query: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
              RG        S   RG P    RG G  GSR +RGG
Sbjct: 540 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 570



 Score = 36.2 bits (82), Expect = 0.052
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 9   KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
           ++F+G +  +  E  L  +F K G I ++ L+ D  + ++RG+AF+TF     A++A +
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224



 Score = 32.0 bits (71), Expect = 0.98
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 9   KLFIGGL-NTETNEKALET---VFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAK 63
           +LF+G +   +T E  LE    V G    +V+V+L  +  +  K+RGF F+ +E    A 
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 306

Query: 64  DAARD-MNGK-SLDGKAIKVEQA 84
            A R  M+GK  + G  + VE A
Sbjct: 307 QARRRLMSGKVKVWGNVVTVEWA 329


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)

Query: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
           LF+  L T   E+ LE  F ++G++  V  +KD        +AFV FE    A  A  +M
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293

Query: 70  NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
           NGK ++G+ I++  A  P  +R                     PPPR   P RG G G G
Sbjct: 294 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 352

Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
           G GG   PP                    RGG+ D     D GY++         RG  P
Sbjct: 353 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412

Query: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
             RG   PPPR      +R AP G  R S  G GG A   RGR S G    R       +
Sbjct: 413 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 467

Query: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
           V    + DGY+  DS      + +++ S    +       DY+  +YG+++   ++    
Sbjct: 468 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 526

Query: 260 YGDR 263
           YG +
Sbjct: 527 YGQQ 530



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 52/156 (33%), Positives = 53/156 (33%), Gaps = 47/156 (30%)

Query: 234 YAPPPR-DYTYRDYGHSSSRDDY--PSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGN 290
           Y PPPR     R  G    R  Y  P   YG  D Y     Y  H   G Y D Y  YG 
Sbjct: 335 YHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPY--YG- 391

Query: 291 SRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPP 350
                              YDD  + R G GG                   GR  RG PP
Sbjct: 392 -------------------YDDGYAVR-GRGG-------------------GRGGRGAPP 412

Query: 351 SVE-RGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGG 385
               RG P  R     S RGAP G  P GSR  RGG
Sbjct: 413 PPRGRGAPPPRGRAGYSQRGAPLGP-PRGSRGGRGG 447



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
           R   Y DY  H   R   P RG G    R GYG   DY        Y D Y+ Y      
Sbjct: 326 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 379

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
               G    Y G   YDD  + R G GG R    +              R G  +RG P 
Sbjct: 380 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 435

Query: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
              RG        S   RG P    RG G  GSR +RGG
Sbjct: 436 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 466



 Score = 36.2 bits (82), Expect = 0.052
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 9   KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
           ++F+G +  +  E  L  +F K G I ++ L+ D  + ++RG+AF+TF     A++A +
Sbjct: 65  EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123



 Score = 32.3 bits (72), Expect = 0.75
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 9   KLFIGGL-NTETNEKALETVFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAKDAA 66
           +LF+G +   +T E  LE        +V+V+L  +  +  K+RGF F+ +E    A  A 
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205

Query: 67  RD-MNGK-SLDGKAIKVEQA 84
           R  M+GK  + G  + VE A
Sbjct: 206 RRLMSGKVKVWGNVVTVEWA 225


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)

Query: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
           LF+  L T   E+ LE  F ++G++  V  +KD        +AFV FE    A  A  +M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394

Query: 70  NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
           NGK ++G+ I++  A  P  +R                     PPPR   P RG G G G
Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 453

Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
           G GG   PP                    RGG+ D     D GY++         RG  P
Sbjct: 454 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 513

Query: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
             RG   PPPR      +R AP G  R S  G GG A   RGR S G    R       +
Sbjct: 514 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 568

Query: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
           V    + DGY+  DS      + +++ S    +       DY+  +YG+++   ++    
Sbjct: 569 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 627

Query: 260 YGDR 263
           YG +
Sbjct: 628 YGQQ 631



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 52/156 (33%), Positives = 53/156 (33%), Gaps = 47/156 (30%)

Query: 234 YAPPPR-DYTYRDYGHSSSRDDY--PSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGN 290
           Y PPPR     R  G    R  Y  P   YG  D Y     Y  H   G Y D Y  YG 
Sbjct: 436 YHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPY--YG- 492

Query: 291 SRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPP 350
                              YDD  + R G GG                   GR  RG PP
Sbjct: 493 -------------------YDDGYAVR-GRGG-------------------GRGGRGAPP 513

Query: 351 SVE-RGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGG 385
               RG P  R     S RGAP G  P GSR  RGG
Sbjct: 514 PPRGRGAPPPRGRAGYSQRGAPLGP-PRGSRGGRGG 548



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
           R   Y DY  H   R   P RG G    R GYG   DY        Y D Y+ Y      
Sbjct: 427 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 480

Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
               G    Y G   YDD  + R G GG R    +              R G  +RG P 
Sbjct: 481 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 536

Query: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
              RG        S   RG P    RG G  GSR +RGG
Sbjct: 537 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 567



 Score = 36.2 bits (82), Expect = 0.052
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 9   KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
           ++F+G +  +  E  L  +F K G I ++ L+ D  + ++RG+AF+TF     A++A +
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224



 Score = 32.3 bits (72), Expect = 0.75
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 9   KLFIGGL-NTETNEKALETVFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAKDAA 66
           +LF+G +   +T E  LE        +V+V+L  +  +  K+RGF F+ +E    A  A 
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306

Query: 67  RD-MNGK-SLDGKAIKVEQA 84
           R  M+GK  + G  + VE A
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA 326


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
          Length = 282

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 91/293 (31%), Positives = 115/293 (39%), Gaps = 55/293 (18%)

Query: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
           L +  L   T+  +L  VF KYGR+ +V + ++  T   RGFAFV F    DA+DA   M
Sbjct: 16  LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75

Query: 70  NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSR-GPPRGFGAGRGGSGGTRGPPSRGGH 128
           +G  LDG+ ++V+ A        R+G    PRSR G PR  G  RGG  G R        
Sbjct: 76  DGAELDGRELRVQVA--------RYGRRDLPRSRQGEPR--GRSRGGGYGRR-------- 117

Query: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRD 188
                     + S  R     +R    RS GPS  RS      R S     R+P SR   
Sbjct: 118 ----------SRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGS--RYSRSPYSRSPY 165

Query: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
           S     R    P  R  Y   R  G      YSS  Y +SR +R ++            H
Sbjct: 166 SRS---RYSRSPYSRSRYRESRYGG----SHYSSSGYSNSRYSRYHS---------SRSH 209

Query: 249 SSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPP 301
           S S     SR           R  S   S         S   SRS+ +TR PP
Sbjct: 210 SKSGSSTSSRSASTSKSSSARRSKSSSVS--------RSRSRSRSSSMTRSPP 254



 Score = 36.2 bits (82), Expect = 0.052
 Identities = 65/227 (28%), Positives = 77/227 (33%), Gaps = 48/227 (21%)

Query: 160 PSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDS 219
           P  ++  P G  RS  G  GR   S GR S   P RR    SR          G S   S
Sbjct: 98  PRSRQGEPRG--RSRGGGYGRRSRSYGRRSRS-PRRRHRSRSR----------GPSCSRS 144

Query: 220 YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGG 279
            S   Y  SR +R                  SR  Y SR    R  Y R R Y +   GG
Sbjct: 145 RSRSRYRGSRYSRS---------------PYSRSPY-SRSRYSRSPYSRSR-YRESRYGG 187

Query: 280 SYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD 339
           S+  S   Y NSR +         Y  S  +    SS      S    SS+R    SS  
Sbjct: 188 SHYSS-SGYSNSRYS--------RYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVS 238

Query: 340 RVGRQERG-----LPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRS 381
           R   + R       PP V +    SR    S S+  P+     G  S
Sbjct: 239 RSRSRSRSSSMTRSPPRVSKRKSKSR----SRSKRPPKSPEEEGQMS 281


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 67/189 (35%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
           L +  L   T+   L  VF KYGR+ +V + +DR T +SRGFAFV F    DA+DA   M
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query: 70  NGKSLDGKAIKVEQATKPSFERGRHGPPPP---PRSRGPPRGFGAGRGGSGGTRGPPSRG 126
           +G  LDG+ ++V+ A        R+G PP     R   PPR +G   GG G     P R 
Sbjct: 76  DGAVLDGRELRVQMA--------RYGRPPDSHHSRRGPPPRRYGG--GGYGRRSRSPRRR 125

Query: 127 GHMDDGGYSMNFNMSSSRGPLPVKRG-PPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSR 185
                   S + + S SR      R     RS   S  RSA     +SSS    R+  SR
Sbjct: 126 RRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS-RSR 184

Query: 186 GRDSYGGPP 194
            R     PP
Sbjct: 185 SRSRSRSPP 193


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 83/309 (26%), Positives = 122/309 (39%), Gaps = 48/309 (15%)

Query: 6   RPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDA 65
           +  K+F+GG+     E  L   F K+G + EV++I D E  + RGF F+TFE    + D 
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQ 169

Query: 66  ARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSR 125
           A +M+   + GK ++V++A +P   + +  P  P  S+   R       G  G   P  +
Sbjct: 170 AVNMHFHDIMGKKVEVKRA-EPRDSKSQ-APGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227

Query: 126 GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSR 185
            G+   G +          GP P  RG PP    P P    P      S+  GG  P   
Sbjct: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPP----PPP----PFTSYIVSTPPGGFPPPQG 279

Query: 186 GRDSYGGPPRRE----PLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDTRDYAPPPR 239
               YG PP+      P P   D +  P           +   +  P S+   D + PP 
Sbjct: 280 FPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPP- 338

Query: 240 DYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRG 299
                     +++ D+P   YG   GYG+D                  +G   S P  + 
Sbjct: 339 ----------TAQPDFP---YGQYAGYGQD---------------LSGFGQGFSDPSQQ- 369

Query: 300 PPPSYGGSS 308
            PPSYGG S
Sbjct: 370 -PPSYGGPS 377



 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 4   ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
           AD  GKLF+GGL+  T ++ L + F +YG +V+ +++KD+ TN+SRGF FV F+ P +  
Sbjct: 6   ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCV 64

Query: 64  DAARDMNGKSLDGKAIKVEQAT----KPSFERGRHGPPPPPRS 102
                    +LDG+ I  +  T    +P   R + G    PRS
Sbjct: 65  GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS 107


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 57/165 (34%), Positives = 76/165 (46%), Gaps = 14/165 (8%)

Query: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
           L + GL+  T E+ L  VF +YG +  V ++ D+ T +SRGFAFV FE   D+K+A    
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180

Query: 70  NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR-GFGAGRGGSGGTRGPPSRGGH 128
           NG  LDG+ I+V+     S  +  H P P      P   G G G GG GG  G   R   
Sbjct: 181 NGMELDGRRIRVDY----SITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDS 236

Query: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPP---------RSGGPSPKR 164
             D GY   ++          +R P P         RS   SP+R
Sbjct: 237 YYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRR 281



 Score = 33.9 bits (76), Expect = 0.26
 Identities = 57/247 (23%), Positives = 84/247 (34%), Gaps = 32/247 (12%)

Query: 152 GPPPRSGGPSPKRSAPSGLVRSSSGMGGRAP--LSRGRDSYGGPPRREPLPSRRDV---Y 206
           G   RS   SP  +     V+S S  G R+P  +S+  +S+     +    SRR     Y
Sbjct: 11  GRESRSQSKSP--TGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRY 68

Query: 207 LSPRDDGYSTKDSYSSRDY-PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDG 265
              R   +S +    SR Y P  R  R  +  P     R  G  ++ D     G      
Sbjct: 69  TRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSL 128

Query: 266 YGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGG--- 322
           Y  +RD          R+ +  YG            P  G +  YD  +    G+     
Sbjct: 129 YTTERDL---------REVFSRYG------------PLSGVNVVYDQRTGRSRGFAFVYF 167

Query: 323 SRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSD 382
            R   S    +  +  +  GR+ R      +R +  +   Y      +  G G GG    
Sbjct: 168 ERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGG 227

Query: 383 RGGGRSR 389
            GGGR R
Sbjct: 228 GGGGRRR 234


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 72/214 (33%), Positives = 96/214 (44%), Gaps = 35/214 (16%)

Query: 3   EADRPG------KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTF 56
           ++ RPG      K+F+GG+  +T E  L   F +YG+I  + ++ DR + K RGFAFVTF
Sbjct: 94  DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153

Query: 57  ESPADAKDAA-----RDMNGKSLD-GKAI-KVEQATKPSFERGRHGPPPPPRSRGPPRGF 109
           +   D+ D         +NG + +  KA+ K E A+  S +RGR G       RG   GF
Sbjct: 154 DD-HDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG--GGF 210

Query: 110 G-----------AGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 158
           G           +GRGG GG+RG    GG  D  GY+   N     G      G P  SG
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGD--GYNGFGNDGGYGG------GGPGYSG 262

Query: 159 GPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGG 192
           G     S   G     SG GG        +  GG
Sbjct: 263 GSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGG 296



 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 93/373 (24%), Positives = 145/373 (38%), Gaps = 55/373 (14%)

Query: 3   EADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
           E ++  KLFIGGL+ ET +++L + F ++G + + ++++D  T +SRGF FVT+ +  + 
Sbjct: 9   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY-ATVEE 67

Query: 63  KDAARDMNGKSLDGKAIKVEQAT--KPSFERGRH--------GPPPPPRSRGPPRGFGAG 112
            DAA +     +DG+ ++ ++A   + S   G H        G           R +   
Sbjct: 68  VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127

Query: 113 RGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKR-------GPPPRSGGPSPKRS 165
            G          RG     G   + F+   S   + +++           R      + +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187

Query: 166 APSGLVRSSSGMG----------------GRAPLSRGRDSYGGPPRREPLPSRRDVYLSP 209
           + S   R  SG G                GR     GR  +GG           D Y   
Sbjct: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY--- 244

Query: 210 RDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR--DYGHSSSRDDYPSRGYGDRDGYG 267
             +G+     Y       S  +R Y    + Y  +   YG S S D Y + G G   G+G
Sbjct: 245 --NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGG---GFG 299

Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRS--APLTRG-----PPPSYGGSSRYDDYSSSRDGY 320
                S+   GGSY D + +Y N  S   P+  G         YGG  +Y     ++ GY
Sbjct: 300 GGSG-SNFGGGGSYND-FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGY 357

Query: 321 GG--SRDSYSSSR 331
           GG  S  SY S R
Sbjct: 358 GGSSSSSSYGSGR 370



 Score = 38.9 bits (89), Expect = 0.008
 Identities = 41/130 (31%), Positives = 48/130 (36%), Gaps = 27/130 (20%)

Query: 259 GYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRD 318
           G+G  D +GR  ++S    GG        +G SR      G    Y G      Y     
Sbjct: 209 GFGGNDNFGRGGNFSGR--GG--------FGGSRGGGGYGGSGDGYNGFGNDGGYGGGGP 258

Query: 319 GYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGG 378
           GY G    Y S            G Q  G   S   GY  S  SY S + G   G G GG
Sbjct: 259 GYSGGSRGYGS------------GGQGYGNQGS---GYGGS-GSYDSYNNGGGGGFG-GG 301

Query: 379 SRSDRGGGRS 388
           S S+ GGG S
Sbjct: 302 SGSNFGGGGS 311



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 289 GNSRSAPLTRGPPPSYGGSSRYDDYS--SSRDGYGGSRDS--YSSSRSDLYSSCDRVGRQ 344
           G S S     G    +GG+  +      S R G+GGSR    Y  S  D Y+     G  
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS-GDGYNGFGNDG-- 251

Query: 345 ERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
                     GY      YS  SRG   G    G++    GG   Y
Sbjct: 252 ----------GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSY 287


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 89/325 (27%), Positives = 119/325 (36%), Gaps = 76/325 (23%)

Query: 9   KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
           K+F+GG+  +T E  L   F KYG+I  + +++DR++ K RGFAFVTF+   D  D    
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVV 185

Query: 69  MNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGGH 128
               +++G   +V++A                +S G  RG G   GGSG   G   RGG+
Sbjct: 186 QKYHTINGHNCEVKKALSKQ----------EMQSAGSQRGRG---GGSGNFMG---RGGN 229

Query: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRD 188
              GG   NF    + G      G     GG    R +  G     +G GG         
Sbjct: 230 FGGGG--GNFGRGGNFG------GRGGYGGGGGGSRGSYGGGDGGYNGFGGDG------G 275

Query: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
           +YGG P                  GYS++  Y                P        YG 
Sbjct: 276 NYGGGP------------------GYSSRGGYGG------------GGPGYGNQGGGYGG 305

Query: 249 SSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--SYESYGNSRSAPLTRGPPPSYGG 306
               D Y   G      YG          GG+Y D  +Y     S   P+  G   S+GG
Sbjct: 306 GGGYDGYNEGGNFGGGNYG---------GGGNYNDFGNYSGQQQSNYGPMKGG---SFGG 353

Query: 307 SSRYDDYSSSRDGYGGSRDSYSSSR 331
            S    Y     G GG    Y S R
Sbjct: 354 RSSGSPYGGGY-GSGGGSGGYGSRR 377


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 79/235 (33%), Positives = 104/235 (44%), Gaps = 51/235 (21%)

Query: 3   EADRPG------KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTF 56
           ++ RPG      K+F+GG+  +T E  L   F +YG+I  + ++ DR + K RGFAFVTF
Sbjct: 94  DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153

Query: 57  ESPADAKDAA-----RDMNGKSLD-GKAI-KVEQATKPSFERGRHGPPPPPRSRGPPRGF 109
           +   D+ D         +NG + +  KA+ K E A+  S +RGR G       RG   GF
Sbjct: 154 DD-HDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG--GGF 210

Query: 110 G-----------AGRGGSGGTRGPPSRGGHMD------------DGGYSMN-----FNMS 141
           G           +GRGG GG+RG    GG  D             GG S N      N S
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQS 270

Query: 142 SSRGPLPVKRGP-PPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPR 195
           S+ GP+  K G    RS GP           R+  G GG    S    SYG   R
Sbjct: 271 SNFGPM--KGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG----SSSSSSYGSGRR 319



 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 28/82 (34%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 3  EADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
          E ++  KLFIGGL+ ET +++L + F ++G + + ++++D  T +SRGF FVT+ +  + 
Sbjct: 9  EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY-ATVEE 67

Query: 63 KDAARDMNGKSLDGKAIKVEQA 84
           DAA +     +DG+ ++ ++A
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRA 89



 Score = 37.7 bits (86), Expect = 0.018
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 259 GYGDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRS--APLTRG-----PPPSYGGSSR 309
           GYG   DGY G   D S+   GGSY D + +Y N  S   P+  G         YGG  +
Sbjct: 236 GYGGSGDGYNGFGNDGSNFGGGGSYND-FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQ 294

Query: 310 YDDYSSSRDGYGG--SRDSYSSSR 331
           Y     ++ GYGG  S  SY S R
Sbjct: 295 YFAKPRNQGGYGGSSSSSSYGSGR 318



 Score = 32.3 bits (72), Expect = 0.75
 Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 27/124 (21%)

Query: 259 GYGDRDGYGRDRDYSDH------PSGGSY---RDSYESYGNSRSAPLTRGPPPSYGGSSR 309
           G+G  D +GR  ++S          GG Y    D Y  +GN  S         ++GG   
Sbjct: 209 GFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGS---------NFGGGGS 259

Query: 310 YDD---YSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGY--PSSRDSYS 364
           Y+D   Y++    +G  +      R    SS    G  +    P  + GY   SS  SY 
Sbjct: 260 YNDFGNYNNQSSNFGPMKGGNFGGR----SSGPYGGGGQYFAKPRNQGGYGGSSSSSSYG 315

Query: 365 SSSR 368
           S  R
Sbjct: 316 SGRR 319


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 72/263 (27%), Positives = 105/263 (39%), Gaps = 20/263 (7%)

Query: 6   RPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDA 65
           +  K+F+GG+     E  L   F K+G + EV++I D E  + RGF F+TFE    + D 
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQ 169

Query: 66  ARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSR 125
           A +M+   + GK ++V++A +P   + +  P  P  S+   R       G  G   P  +
Sbjct: 170 AVNMHFHDIMGKKVEVKRA-EPRDSKSQ-APGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227

Query: 126 GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSR 185
            G+   G +          GP P  RG PP    P P    P      S+  GG  P   
Sbjct: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPP----PPP----PFTSYIVSTPPGGFPPPQG 279

Query: 186 GRDSYGGPPRRE----PLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDTRDYAPPPR 239
               YG PP+      P P   D +  P           +   +  P S+   D + PP 
Sbjct: 280 FPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPT 339

Query: 240 ---DYTYRDYGHSSSRDDYPSRG 259
              D+ Y  YG  S     P  G
Sbjct: 340 AQPDFPYGQYGLGSYSPAPPGCG 362



 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 4   ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
           AD  GKLF+GGL+  T ++ L + F +YG +V+ +++KD+ TN+SRGF FV F+ P +  
Sbjct: 6   ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCV 64

Query: 64  DAARDMNGKSLDGKAIKVEQAT----KPSFERGRHGPPPPPRS 102
                    +LDG+ I  +  T    +P   R + G    PRS
Sbjct: 65  GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS 107


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,108,467
Number of Sequences: 37866
Number of extensions: 1565768
Number of successful extensions: 15711
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 934
Number of HSP's that attempted gapping in prelim test: 8577
Number of HSP's gapped (non-prelim): 5233
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press