Guide to the Human Genome
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Search of human proteins with 240255505

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|240255505 potassium channel, subfamily T, member 1 [Homo
sapiens]
         (1235 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|240255505 potassium channel, subfamily T, member 1 [Homo sapi...  2513   0.0  
gi|41349443 potassium channel, subfamily T, member 2 [Homo sapiens]  1782   0.0  
gi|238624132 large conductance calcium-activated potassium chann...   130   1e-29
gi|62388890 large conductance calcium-activated potassium channe...   118   3e-26
gi|238624130 large conductance calcium-activated potassium chann...   118   4e-26
gi|26638650 large conductance calcium-activated potassium channe...   118   4e-26
gi|157074214 potassium channel, subfamily U, member 1 [Homo sapi...   112   2e-24
gi|4504847 potassium channel, subfamily K, member 1 [Homo sapiens]     41   0.006
gi|27436996 potassium voltage-gated channel, subfamily G, member...    40   0.014
gi|24497460 Shaw-related voltage-gated potassium channel protein...    40   0.018
gi|4758624 potassium channel, subfamily K, member 6 [Homo sapiens]     40   0.018
gi|88758576 Shaw-related voltage-gated potassium channel protein...    40   0.018
gi|24497462 Shaw-related voltage-gated potassium channel protein...    40   0.018
gi|24497464 Shaw-related voltage-gated potassium channel protein...    40   0.018
gi|27436974 potassium voltage-gated channel, Shab-related subfam...    38   0.052
gi|4504849 potassium channel, subfamily K, member 3 [Homo sapiens]     38   0.068
gi|16306555 potassium channel, subfamily K, member 13 [Homo sapi...    38   0.068
gi|21217561 Shaw-related voltage-gated potassium channel protein...    38   0.068
gi|21217563 Shaw-related voltage-gated potassium channel protein...    38   0.068
gi|24497458 Shaw-related voltage-gated potassium channel protein...    38   0.068
gi|4826786 Shaw-related voltage-gated potassium channel protein ...    37   0.089
gi|163792201 Shaw-related voltage-gated potassium channel protei...    37   0.089
gi|156616271 kinesin family member 19 [Homo sapiens]                   37   0.089
gi|27436984 potassium voltage-gated channel, Shal-related subfam...    37   0.12 
gi|27436986 potassium voltage-gated channel, Shal-related subfam...    37   0.12 
gi|27436993 potassium voltage-gated channel, subfamily G, member...    37   0.12 
gi|19071574 potassium voltage-gated channel, subfamily G, member...    37   0.12 
gi|27436988 potassium voltage-gated channel, subfamily G, member...    37   0.12 
gi|20070166 potassium voltage-gated channel, subfamily F, member...    37   0.12 
gi|11545761 potassium channel, subfamily K, member 12 [Homo sapi...    36   0.20 

>gi|240255505 potassium channel, subfamily T, member 1 [Homo sapiens]
          Length = 1235

 Score = 2513 bits (6512), Expect = 0.0
 Identities = 1235/1235 (100%), Positives = 1235/1235 (100%)

Query: 1    MPLPDGARTPGGVCREARGGGYTNRTFEFDDGQCAPRRPCAGDGALLDTAGFKMSDLDSE 60
            MPLPDGARTPGGVCREARGGGYTNRTFEFDDGQCAPRRPCAGDGALLDTAGFKMSDLDSE
Sbjct: 1    MPLPDGARTPGGVCREARGGGYTNRTFEFDDGQCAPRRPCAGDGALLDTAGFKMSDLDSE 60

Query: 61   VLPLPPRYRFRDLLLGDPSFQNDDRVQVEFYVNENTFKERLKLFFIKNQRSSLRIRLFNF 120
            VLPLPPRYRFRDLLLGDPSFQNDDRVQVEFYVNENTFKERLKLFFIKNQRSSLRIRLFNF
Sbjct: 61   VLPLPPRYRFRDLLLGDPSFQNDDRVQVEFYVNENTFKERLKLFFIKNQRSSLRIRLFNF 120

Query: 121  SLKLLTCLLYIVRVLLDDPALGIGCWGCPKQNYSFNDSSSEINWAPILWVERKMTLWAIQ 180
            SLKLLTCLLYIVRVLLDDPALGIGCWGCPKQNYSFNDSSSEINWAPILWVERKMTLWAIQ
Sbjct: 121  SLKLLTCLLYIVRVLLDDPALGIGCWGCPKQNYSFNDSSSEINWAPILWVERKMTLWAIQ 180

Query: 181  VIVAIISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLFIPVFL 240
            VIVAIISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLFIPVFL
Sbjct: 181  VIVAIISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLFIPVFL 240

Query: 241  NCWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLS 300
            NCWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLS
Sbjct: 241  NCWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLS 300

Query: 301  LLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLWMERQKSG 360
            LLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLWMERQKSG
Sbjct: 301  LLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLWMERQKSG 360

Query: 361  GNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDVQVRRVL 420
            GNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDVQVRRVL
Sbjct: 361  GNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDVQVRRVL 420

Query: 421  QIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKD 480
            QIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKD
Sbjct: 421  QIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKD 480

Query: 481  FAPNCPLYVQILKPENKFHVKFADHVVCEEECKYAMLALNCICPATSTLITLLVHTSRGQ 540
            FAPNCPLYVQILKPENKFHVKFADHVVCEEECKYAMLALNCICPATSTLITLLVHTSRGQ
Sbjct: 481  FAPNCPLYVQILKPENKFHVKFADHVVCEEECKYAMLALNCICPATSTLITLLVHTSRGQ 540

Query: 541  EGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFREYEGKSFTYAAFHAHKKYGVCLIGLKR 600
            EGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFREYEGKSFTYAAFHAHKKYGVCLIGLKR
Sbjct: 541  EGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFREYEGKSFTYAAFHAHKKYGVCLIGLKR 600

Query: 601  EDNKSILLNPGPRHILAASDTCFYINITKEENSAFIFKQEEKRKKRAFSGQGLHEGPARL 660
            EDNKSILLNPGPRHILAASDTCFYINITKEENSAFIFKQEEKRKKRAFSGQGLHEGPARL
Sbjct: 601  EDNKSILLNPGPRHILAASDTCFYINITKEENSAFIFKQEEKRKKRAFSGQGLHEGPARL 660

Query: 661  PVHSIIASMGTVAMDLQGTEHRPTQSGGGGGGSKLALPTENGSGSRRPSIAPVLELADSS 720
            PVHSIIASMGTVAMDLQGTEHRPTQSGGGGGGSKLALPTENGSGSRRPSIAPVLELADSS
Sbjct: 661  PVHSIIASMGTVAMDLQGTEHRPTQSGGGGGGSKLALPTENGSGSRRPSIAPVLELADSS 720

Query: 721  ALLPCDLLSDQSEDEVTPSDDEGLSVVEYVKGYPPNSPYIGSSPTLCHLLPVKAPFCCLR 780
            ALLPCDLLSDQSEDEVTPSDDEGLSVVEYVKGYPPNSPYIGSSPTLCHLLPVKAPFCCLR
Sbjct: 721  ALLPCDLLSDQSEDEVTPSDDEGLSVVEYVKGYPPNSPYIGSSPTLCHLLPVKAPFCCLR 780

Query: 781  LDKGCKHNSYEDAKAYGFKNKLIIVSAETAGNGLYNFIVPLRAYYRSRKELNPIVLLLDN 840
            LDKGCKHNSYEDAKAYGFKNKLIIVSAETAGNGLYNFIVPLRAYYRSRKELNPIVLLLDN
Sbjct: 781  LDKGCKHNSYEDAKAYGFKNKLIIVSAETAGNGLYNFIVPLRAYYRSRKELNPIVLLLDN 840

Query: 841  KPDHHFLEAICCFPMVYYMEGSVDNLDSLLQCGIIYADNLVVVDKESTMSAEEDYMADAK 900
            KPDHHFLEAICCFPMVYYMEGSVDNLDSLLQCGIIYADNLVVVDKESTMSAEEDYMADAK
Sbjct: 841  KPDHHFLEAICCFPMVYYMEGSVDNLDSLLQCGIIYADNLVVVDKESTMSAEEDYMADAK 900

Query: 901  TIVNVQTMFRLFPSLSITTELTHPSNMRFMQFRAKDSYSLALSKLEKRERENGSNLAFMF 960
            TIVNVQTMFRLFPSLSITTELTHPSNMRFMQFRAKDSYSLALSKLEKRERENGSNLAFMF
Sbjct: 901  TIVNVQTMFRLFPSLSITTELTHPSNMRFMQFRAKDSYSLALSKLEKRERENGSNLAFMF 960

Query: 961  RLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTPGSGYLCAMKITEGDLWIR 1020
            RLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTPGSGYLCAMKITEGDLWIR
Sbjct: 961  RLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTPGSGYLCAMKITEGDLWIR 1020

Query: 1021 TYGRLFQKLCSSSAEIPIGIYRTESHVFSTSEPHDLRAQSQISVNVEDCEDTREVKGPWG 1080
            TYGRLFQKLCSSSAEIPIGIYRTESHVFSTSEPHDLRAQSQISVNVEDCEDTREVKGPWG
Sbjct: 1021 TYGRLFQKLCSSSAEIPIGIYRTESHVFSTSEPHDLRAQSQISVNVEDCEDTREVKGPWG 1080

Query: 1081 SRAGTGGSSQGRHTGGGDPAEHPLLRRKSLQWARRLSRKAPKQAGRAAAAEWISQQRLSL 1140
            SRAGTGGSSQGRHTGGGDPAEHPLLRRKSLQWARRLSRKAPKQAGRAAAAEWISQQRLSL
Sbjct: 1081 SRAGTGGSSQGRHTGGGDPAEHPLLRRKSLQWARRLSRKAPKQAGRAAAAEWISQQRLSL 1140

Query: 1141 YRRSERQELSELVKNRMKHLGLPTTGYDEMNDHQNTLSYVLINPPPDTRLEPSDIVYLIR 1200
            YRRSERQELSELVKNRMKHLGLPTTGYDEMNDHQNTLSYVLINPPPDTRLEPSDIVYLIR
Sbjct: 1141 YRRSERQELSELVKNRMKHLGLPTTGYDEMNDHQNTLSYVLINPPPDTRLEPSDIVYLIR 1200

Query: 1201 SDPLAHVASSSQSRKSSCSHKLSSCNPETRDETQL 1235
            SDPLAHVASSSQSRKSSCSHKLSSCNPETRDETQL
Sbjct: 1201 SDPLAHVASSSQSRKSSCSHKLSSCNPETRDETQL 1235


>gi|41349443 potassium channel, subfamily T, member 2 [Homo sapiens]
          Length = 1135

 Score = 1782 bits (4616), Expect = 0.0
 Identities = 896/1185 (75%), Positives = 1006/1185 (84%), Gaps = 53/1185 (4%)

Query: 54   MSDLDSEVLPLPPRYRFRDLLLGDPSFQNDDRVQVEFYVNENTFKERLKLFFIKNQRSSL 113
            M DL+SEV PLPPRYRFRDLLLGD  +QNDDRVQVEFY+NENTFKERLKLFFIKNQRSSL
Sbjct: 1    MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTFKERLKLFFIKNQRSSL 60

Query: 114  RIRLFNFSLKLLTCLLYIVRVLLDDPALGIGCWGCPKQNYSFNDSSSEINWAPILWVERK 173
            RIRLFNFSLKLL+CLLYI+RVLL++P+ G                     W+ I WV R 
Sbjct: 61   RIRLFNFSLKLLSCLLYIIRVLLENPSQGN-------------------EWSHIFWVNRS 101

Query: 174  MTLWAIQVIVAIISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRN 233
            + LW +QV VA+IS  ET+LL YLSYKGNIWEQI R+ F+LE+IN +PFII+IFWP LRN
Sbjct: 102  LPLWGLQVSVALISLFETILLGYLSYKGNIWEQILRIPFILEIINAVPFIISIFWPSLRN 161

Query: 234  LFIPVFLNCWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLE 293
            LF+PVFLNCWLAKHALENMIND HRAI RTQSAMFNQVLIL  TLLCL+FT  CGIQHLE
Sbjct: 162  LFVPVFLNCWLAKHALENMINDLHRAIQRTQSAMFNQVLILISTLLCLIFTCICGIQHLE 221

Query: 294  RAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLW 353
            R G+ L+L  S YFCIVTFSTVG+GDVTP+ W S+L VV MICVALVVLP+QFE+L YLW
Sbjct: 222  RIGKKLNLFDSLYFCIVTFSTVGFGDVTPETWSSKLFVVAMICVALVVLPIQFEQLAYLW 281

Query: 354  MERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMD 413
            MERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMD
Sbjct: 282  MERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMD 341

Query: 414  VQVRRVLQIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNEVDRTAADHQTIL 473
            VQVRRVLQIP+WSQRVIYLQGSALKDQDL+RAKMD+ EACFILSSR EVDRT++DHQTIL
Sbjct: 342  VQVRRVLQIPMWSQRVIYLQGSALKDQDLLRAKMDDAEACFILSSRCEVDRTSSDHQTIL 401

Query: 474  RAWAVKDFAPNCPLYVQILKPENKFHVKFADHVVCEEECKYAMLALNCICPATSTLITLL 533
            RAWAVKDFAPNCPLYVQILKPENKFH+KFADHVVCEEE KYAMLALNCICPATSTLITLL
Sbjct: 402  RAWAVKDFAPNCPLYVQILKPENKFHIKFADHVVCEEEFKYAMLALNCICPATSTLITLL 461

Query: 534  VHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFREYEGKSFTYAAFHAHKKYGV 593
            VHTSRGQEGQ+SPEQWQ+MYGRCSGNEVYHI + +S FF EYEGKSFTYA+FHAHKK+GV
Sbjct: 462  VHTSRGQEGQQSPEQWQKMYGRCSGNEVYHIVLEESTFFAEYEGKSFTYASFHAHKKFGV 521

Query: 594  CLIGLKREDNKSILLNPGPRHILAASDTCFYINITKEENSAFIFKQEEKRKKRAFSGQGL 653
            CLIG++REDNK+ILLNPGPR+I+ ++D CFYINITKEENSA  FK +++++K   S +  
Sbjct: 522  CLIGVRREDNKNILLNPGPRYIMNSTDICFYINITKEENSA--FKNQDQQRKSNVS-RSF 578

Query: 654  HEGPARLPVHSIIASMGTVAMDLQGTEHRPTQSGGGGGGSKLALPTENGSGSRRPSIAPV 713
            + GP+RLPVHSIIASMGTVA+DLQ T  R         G  L+LPTE     RRPSIAPV
Sbjct: 579  YHGPSRLPVHSIIASMGTVAIDLQDTSCR------SASGPTLSLPTEGSKEIRRPSIAPV 632

Query: 714  LELADSSALLPCDLLSDQSEDEVTPSDDEGLSVVEYVKGYPPNSPYIGSSPTLCHLLPVK 773
            LE+AD+S++  CDLLSDQSEDE TP D+E  S +EY KGYPP SPYIGSSPT CHLL  K
Sbjct: 633  LEVADTSSIQTCDLLSDQSEDETTP-DEEMSSNLEYAKGYPPYSPYIGSSPTFCHLLHEK 691

Query: 774  APFCCLRLDKGCKHNSYEDAKAYGFKNKLIIVSAETAGNGLYNFIVPLRAYYRSRKELNP 833
             PFCCLRLDK C+HN YEDAKAYGFKNKLIIV+AETAGNGLYNFIVPLRAYYR +KELNP
Sbjct: 692  VPFCCLRLDKSCQHNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLRAYYRPKKELNP 751

Query: 834  IVLLLDNKPDHHFLEAICCFPMVYYMEGSVDNLDSLLQCGIIYADNLVVVDKESTMSAEE 893
            IVLLLDN PD HFL+AIC FPMVYYM GS+DNLD LL+CG+ +A N+VVVDKESTMSAEE
Sbjct: 752  IVLLLDNPPDMHFLDAICWFPMVYYMVGSIDNLDDLLRCGVTFAANMVVVDKESTMSAEE 811

Query: 894  DYMADAKTIVNVQTMFRLFPSLSITTELTHPSNMRFMQFRAKDSYSLALSKLEKRERENG 953
            DYMADAKTIVNVQT+FRLF SLSI TELTHP+NMRFMQFRAKD YSLALSKLEK+ERE G
Sbjct: 812  DYMADAKTIVNVQTLFRLFSSLSIITELTHPANMRFMQFRAKDCYSLALSKLEKKERERG 871

Query: 954  SNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTPGSGYLCAMKIT 1013
            SNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMI+ITRLLLGLDTTPGSG+LC+MKIT
Sbjct: 872  SNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMISITRLLLGLDTTPGSGFLCSMKIT 931

Query: 1014 EGDLWIRTYGRLFQKLCSSSAEIPIGIYRTESHVFSTSEPHDLRAQSQISVNVEDCEDTR 1073
              DLWIRTY RL+QKLCSS+ ++PIGIYRTES   +TSE       SQIS++VE+ EDT+
Sbjct: 932  ADDLWIRTYARLYQKLCSSTGDVPIGIYRTESQKLTTSE-------SQISISVEEWEDTK 984

Query: 1074 EVKGPWGSRAGTGGSSQGRHTGGGDPAEHPLLRRKSLQWARRLSRKAPKQAGRAAAAEWI 1133
            + K     R      S  R++   D ++HPLLRRKS+QWARRLSRK PK +G+   AE I
Sbjct: 985  DSKEQGHHR------SNHRNSTSSDQSDHPLLRRKSMQWARRLSRKGPKHSGK--TAEKI 1036

Query: 1134 SQQRLSLYRRSERQELSELVKNRMKHLGLPTTGYDEMNDHQNTLSYVLINPPPDTRLEPS 1193
            +QQRL+LYRRSERQEL+ELVKNRMKHLGL T GYDEMNDHQ+TLSY+LINP PDTR+E +
Sbjct: 1037 TQQRLNLYRRSERQELAELVKNRMKHLGLSTVGYDEMNDHQSTLSYILINPSPDTRIELN 1096

Query: 1194 DIVYLIRSDPLAHVASSSQSRKSSCSHKLSSCN---PETRDETQL 1235
            D+VYLIR DPLA++ +S  SR++S       CN    ++R+ETQL
Sbjct: 1097 DVVYLIRPDPLAYLPNSEPSRRNSI------CNVTGQDSREETQL 1135


>gi|238624132 large conductance calcium-activated potassium channel
            subfamily M alpha member 1 isoform d [Homo sapiens]
          Length = 1219

 Score =  130 bits (326), Expect = 1e-29
 Identities = 204/897 (22%), Positives = 350/897 (39%), Gaps = 127/897 (14%)

Query: 177  WAIQVIVAI-ISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLF 235
            + +Q+ +A  + FL    L +++    +W       F LE+ + + F      PP+   F
Sbjct: 213  FTLQIDMAFNVFFLLYFGLRFIAANDKLW-------FWLEVNSVVDFFTV---PPV---F 259

Query: 236  IPVFLN-CWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTG---TCGIQH 291
            + V+LN  WL    L  +       IL+  + +     I    LL +  +      G  H
Sbjct: 260  VSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIH 319

Query: 292  L-ERAGE------NLSLLTSF---YFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVV 341
            L E +G+      N   LT +   Y  +VT STVGYGDV  K    +L +V  I   L +
Sbjct: 320  LVENSGDPWENFQNNQALTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAM 379

Query: 342  LPLQFEELVYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQD 401
                  E++ L   R+K GG+YS       KH+V+C   + ++ + +FL +F  H    D
Sbjct: 380  FASYVPEIIELIGNRKKYGGSYSA--VSGRKHIVVC-GHITLESVSNFLKDFL-HKDRDD 435

Query: 402  YYVVILCPTEMDVQVRRVLQIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNE 461
              V I+    +   +           +V + QGS L   DL R K+++ +AC IL+++  
Sbjct: 436  VNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYC 495

Query: 462  VDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHV--------KFADHVVCEEECK 513
             D  A D   I+R  ++K++ P   +  Q+L+  NK H+        K  D  +C  E K
Sbjct: 496  ADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELK 555

Query: 514  YAMLALNCICPATSTLITLLVHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFR 573
               +A +C+    ST++  L       + +E  + WQ+ Y     NE+Y   +  +    
Sbjct: 556  LGFIAQSCLAQGLSTMLANLFSMRSFIKIEE--DTWQKYYLEGVSNEMYTEYLSSA---- 609

Query: 574  EYEGKSFTYAAFHAHKKYGVCLIGLKRED---NKSILLNPGPRHILAASDTCFYINITKE 630
             + G SF         K  + +I ++ +       IL+NPG            ++ I + 
Sbjct: 610  -FVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGN-----------HLKIQEG 657

Query: 631  ENSAFIFKQEEKRKKRAFSGQGLHE---GPARLPVHSIIASMGTVAM-DLQGTEHRPTQS 686
                FI    ++ K+  F  +  H+    P R      I   G   + D Q +   P + 
Sbjct: 658  TLGFFIASDAKEVKRAFFYCKACHDDITDPKR------IKKCGCKRLEDEQPSTLSPKKK 711

Query: 687  GGGGGGSKLALPTENGSGSRRPSIAPVLELADSSALLPCDLLSDQSEDEVTPSDDEGL-- 744
                          NG     P+ +P L +     L+P +   D  +  V   D  G+  
Sbjct: 712  ------------QRNGGMRNSPNTSPKL-MRHDPLLIPGNDQIDNMDSNVKKYDSTGMFH 758

Query: 745  ----SVVEYVKGYPPNSPYIGSSPTLCHL------LPVKAPFCCLRLDKGCKHNSYEDAK 794
                  +E V       PY+G    +  L      +P           K  K    E A 
Sbjct: 759  WCAPKEIEKVILVTGWMPYLGPRVLMTCLDIGVVCMPTDIQSTSPASIKKFKETRSEAAM 818

Query: 795  AY--GFKNKLIIVSAETAGNGLYNFIVPLRAYYRSRKELNPIVLLLDNKPDHHFLEAICC 852
                G     I     +A  GL N ++PLRA      EL  IV +   +      E +  
Sbjct: 819  TVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLHN 878

Query: 853  FPMVYYMEGSVDNLDSLLQCGIIYADNLVVVDKESTMSAEEDYMADAKTI---VNVQTMF 909
            FP V  + G+  +   L    I   D  V++      + ++  + D + I   +N+++M 
Sbjct: 879  FPKVSILPGTPLSRADLRAVNINLCDMCVILSANQN-NIDDTSLQDKECILASLNIKSM- 936

Query: 910  RLFPSLSIT-----------TELTHPSNMRFMQFRAKDSYSLALSKLEKRERENGSNLAF 958
            +   S+ +             + + P N        + S +  ++     E  N +N+ F
Sbjct: 937  QFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQF 996

Query: 959  M-------------FRLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTP 1002
            +                PFA G  F++S+LD+L+  ++  D ++T+ R L+    TP
Sbjct: 997  LDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATP 1053



 Score = 34.7 bits (78), Expect = 0.58
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 12/73 (16%)

Query: 1174 QNTLSYVLINPPPDTRLEPSDIVY-LIRSD--------PLAHVASSSQ--SRKSSCSHKL 1222
            Q T  YV+ NPP +  L P+D+++ L++ D         L+H + SSQ  S+KSS  H +
Sbjct: 1133 QCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQSRASLSHSSHSSQSSSKKSSSVHSI 1192

Query: 1223 -SSCNPETRDETQ 1234
             S+ N + R +++
Sbjct: 1193 PSTANRQNRPKSR 1205


>gi|62388890 large conductance calcium-activated potassium channel
           subfamily M alpha member 1 isoform a [Homo sapiens]
          Length = 1182

 Score =  118 bits (296), Expect = 3e-26
 Identities = 127/493 (25%), Positives = 210/493 (42%), Gaps = 57/493 (11%)

Query: 177 WAIQVIVAI-ISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLF 235
           + +Q+ +A  + FL    L +++    +W       F LE+ + + F      PP+   F
Sbjct: 213 FTLQIDMAFNVFFLLYFGLRFIAANDKLW-------FWLEVNSVVDFFTV---PPV---F 259

Query: 236 IPVFLN-CWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTG---TCGIQH 291
           + V+LN  WL    L  +       IL+  + +     I    LL +  +      G  H
Sbjct: 260 VSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIH 319

Query: 292 L-ERAGE------NLSLLTSF---YFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVV 341
           L E +G+      N   LT +   Y  +VT STVGYGDV  K    +L +V  I   L +
Sbjct: 320 LVENSGDPWENFQNNQALTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAM 379

Query: 342 LPLQFEELVYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQD 401
                 E++ L   R+K GG+YS       KH+V+C   + ++ + +FL +F  H    D
Sbjct: 380 FASYVPEIIELIGNRKKYGGSYSA--VSGRKHIVVC-GHITLESVSNFLKDFL-HKDRDD 435

Query: 402 YYVVILCPTEMDVQVRRVLQIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNE 461
             V I+    +   +           +V + QGS L   DL R K+++ +AC IL+++  
Sbjct: 436 VNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYC 495

Query: 462 VDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHV--------KFADHVVCEEECK 513
            D  A D   I+R  ++K++ P   +  Q+L+  NK H+        K  D  +C  E K
Sbjct: 496 ADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELK 555

Query: 514 YAMLALNCICPATSTLITLLVHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFR 573
              +A +C+    ST++  L       + +E  + WQ+ Y     NE+Y   +  +    
Sbjct: 556 LGFIAQSCLAQGLSTMLANLFSMRSFIKIEE--DTWQKYYLEGVSNEMYTEYLSSA---- 609

Query: 574 EYEGKSFTYAAFHAHKKYGVCLIGL-------KREDNKSILLNPGPRHILAASDTC--FY 624
            + G SF         K  + +I +       +    K IL+NPG  H+     T   F 
Sbjct: 610 -FVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRSRKRILINPG-NHLKIQEGTLGFFI 667

Query: 625 INITKEENSAFIF 637
            +  KE   AF +
Sbjct: 668 ASDAKEVKRAFFY 680



 Score = 38.5 bits (88), Expect = 0.040
 Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 813  GLYNFIVPLRAYYRSRKELNPIVLLLDNKPDHHFLEAICCFPMVYYMEGSVDNLDSLLQC 872
            GL N ++PLRA      EL  IV +   +      E +  FP V  + G+  +   L   
Sbjct: 802  GLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLHNFPKVSILPGTPLSRADLRAV 861

Query: 873  GIIYADNLVVVDKESTMSAEEDYMADAKTIV---NVQTMFRLFPSLSITT---------- 919
             I   D  V++      + ++  + D + I+   N+++M +   S+ +            
Sbjct: 862  NINLCDMCVILSANQN-NIDDTSLQDKECILASLNIKSM-QFDDSIGVLQANSQGFTPPG 919

Query: 920  -ELTHPSNMRFMQFRAKDSYSLALSKLEKRERENGSNLAFM-------------FRLPFA 965
             + + P N        + S +  ++     E  N +N+ F+                PFA
Sbjct: 920  MDRSSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFA 979

Query: 966  AGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTP 1002
             G  F++S+LD+L+  ++  D ++T+ R L+    TP
Sbjct: 980  CGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATP 1016



 Score = 34.7 bits (78), Expect = 0.58
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 12/73 (16%)

Query: 1174 QNTLSYVLINPPPDTRLEPSDIVY-LIRSD--------PLAHVASSSQ--SRKSSCSHKL 1222
            Q T  YV+ NPP +  L P+D+++ L++ D         L+H + SSQ  S+KSS  H +
Sbjct: 1096 QCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQSRASLSHSSHSSQSSSKKSSSVHSI 1155

Query: 1223 -SSCNPETRDETQ 1234
             S+ N + R +++
Sbjct: 1156 PSTANRQNRPKSR 1168


>gi|238624130 large conductance calcium-activated potassium channel
           subfamily M alpha member 1 isoform c [Homo sapiens]
          Length = 1236

 Score =  118 bits (295), Expect = 4e-26
 Identities = 126/489 (25%), Positives = 210/489 (42%), Gaps = 53/489 (10%)

Query: 177 WAIQVIVAI-ISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLF 235
           + +Q+ +A  + FL    L +++    +W       F LE+ + + F      PP+   F
Sbjct: 213 FTLQIDMAFNVFFLLYFGLRFIAANDKLW-------FWLEVNSVVDFFTV---PPV---F 259

Query: 236 IPVFLN-CWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTG---TCGIQH 291
           + V+LN  WL    L  +       IL+  + +     I    LL +  +      G  H
Sbjct: 260 VSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIH 319

Query: 292 L-ERAGE------NLSLLTSF---YFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVV 341
           L E +G+      N   LT +   Y  +VT STVGYGDV  K    +L +V  I   L +
Sbjct: 320 LVENSGDPWENFQNNQALTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAM 379

Query: 342 LPLQFEELVYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQD 401
                 E++ L   R+K GG+YS       KH+V+C   + ++ + +FL +F  H    D
Sbjct: 380 FASYVPEIIELIGNRKKYGGSYSA--VSGRKHIVVC-GHITLESVSNFLKDFL-HKDRDD 435

Query: 402 YYVVILCPTEMDVQVRRVLQIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNE 461
             V I+    +   +           +V + QGS L   DL R K+++ +AC IL+++  
Sbjct: 436 VNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYC 495

Query: 462 VDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHV--------KFADHVVCEEECK 513
            D  A D   I+R  ++K++ P   +  Q+L+  NK H+        K  D  +C  E K
Sbjct: 496 ADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELK 555

Query: 514 YAMLALNCICPATSTLITLLVHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFR 573
              +A +C+    ST++  L       + +E  + WQ+ Y     NE+Y   +  +    
Sbjct: 556 LGFIAQSCLAQGLSTMLANLFSMRSFIKIEE--DTWQKYYLEGVSNEMYTEYLSSA---- 609

Query: 574 EYEGKSFTYAAFHAHKKYGVCLIGLKRED---NKSILLNPGPRHILAASDTC--FYINIT 628
            + G SF         K  + +I ++ +       IL+NPG  H+     T   F  +  
Sbjct: 610 -FVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPG-NHLKIQEGTLGFFIASDA 667

Query: 629 KEENSAFIF 637
           KE   AF +
Sbjct: 668 KEVKRAFFY 676



 Score = 38.5 bits (88), Expect = 0.040
 Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 813  GLYNFIVPLRAYYRSRKELNPIVLLLDNKPDHHFLEAICCFPMVYYMEGSVDNLDSLLQC 872
            GL N ++PLRA      EL  IV +   +      E +  FP V  + G+  +   L   
Sbjct: 856  GLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLHNFPKVSILPGTPLSRADLRAV 915

Query: 873  GIIYADNLVVVDKESTMSAEEDYMADAKTIV---NVQTMFRLFPSLSITT---------- 919
             I   D  V++      + ++  + D + I+   N+++M +   S+ +            
Sbjct: 916  NINLCDMCVILSANQN-NIDDTSLQDKECILASLNIKSM-QFDDSIGVLQANSQGFTPPG 973

Query: 920  -ELTHPSNMRFMQFRAKDSYSLALSKLEKRERENGSNLAFM-------------FRLPFA 965
             + + P N        + S +  ++     E  N +N+ F+                PFA
Sbjct: 974  MDRSSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFA 1033

Query: 966  AGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTP 1002
             G  F++S+LD+L+  ++  D ++T+ R L+    TP
Sbjct: 1034 CGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATP 1070



 Score = 34.7 bits (78), Expect = 0.58
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 12/73 (16%)

Query: 1174 QNTLSYVLINPPPDTRLEPSDIVY-LIRSD--------PLAHVASSSQ--SRKSSCSHKL 1222
            Q T  YV+ NPP +  L P+D+++ L++ D         L+H + SSQ  S+KSS  H +
Sbjct: 1150 QCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQSRASLSHSSHSSQSSSKKSSSVHSI 1209

Query: 1223 -SSCNPETRDETQ 1234
             S+ N + R +++
Sbjct: 1210 PSTANRQNRPKSR 1222


>gi|26638650 large conductance calcium-activated potassium channel
           subfamily M alpha member 1 isoform b [Homo sapiens]
          Length = 1178

 Score =  118 bits (295), Expect = 4e-26
 Identities = 126/489 (25%), Positives = 210/489 (42%), Gaps = 53/489 (10%)

Query: 177 WAIQVIVAI-ISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLF 235
           + +Q+ +A  + FL    L +++    +W       F LE+ + + F      PP+   F
Sbjct: 213 FTLQIDMAFNVFFLLYFGLRFIAANDKLW-------FWLEVNSVVDFFTV---PPV---F 259

Query: 236 IPVFLN-CWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTG---TCGIQH 291
           + V+LN  WL    L  +       IL+  + +     I    LL +  +      G  H
Sbjct: 260 VSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIH 319

Query: 292 L-ERAGE------NLSLLTSF---YFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVV 341
           L E +G+      N   LT +   Y  +VT STVGYGDV  K    +L +V  I   L +
Sbjct: 320 LVENSGDPWENFQNNQALTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAM 379

Query: 342 LPLQFEELVYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQD 401
                 E++ L   R+K GG+YS       KH+V+C   + ++ + +FL +F  H    D
Sbjct: 380 FASYVPEIIELIGNRKKYGGSYSA--VSGRKHIVVC-GHITLESVSNFLKDFL-HKDRDD 435

Query: 402 YYVVILCPTEMDVQVRRVLQIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNE 461
             V I+    +   +           +V + QGS L   DL R K+++ +AC IL+++  
Sbjct: 436 VNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYC 495

Query: 462 VDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHV--------KFADHVVCEEECK 513
            D  A D   I+R  ++K++ P   +  Q+L+  NK H+        K  D  +C  E K
Sbjct: 496 ADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELK 555

Query: 514 YAMLALNCICPATSTLITLLVHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFR 573
              +A +C+    ST++  L       + +E  + WQ+ Y     NE+Y   +  +    
Sbjct: 556 LGFIAQSCLAQGLSTMLANLFSMRSFIKIEE--DTWQKYYLEGVSNEMYTEYLSSA---- 609

Query: 574 EYEGKSFTYAAFHAHKKYGVCLIGLKRED---NKSILLNPGPRHILAASDTC--FYINIT 628
            + G SF         K  + +I ++ +       IL+NPG  H+     T   F  +  
Sbjct: 610 -FVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPG-NHLKIQEGTLGFFIASDA 667

Query: 629 KEENSAFIF 637
           KE   AF +
Sbjct: 668 KEVKRAFFY 676



 Score = 38.5 bits (88), Expect = 0.040
 Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 813  GLYNFIVPLRAYYRSRKELNPIVLLLDNKPDHHFLEAICCFPMVYYMEGSVDNLDSLLQC 872
            GL N ++PLRA      EL  IV +   +      E +  FP V  + G+  +   L   
Sbjct: 798  GLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLHNFPKVSILPGTPLSRADLRAV 857

Query: 873  GIIYADNLVVVDKESTMSAEEDYMADAKTIV---NVQTMFRLFPSLSITT---------- 919
             I   D  V++      + ++  + D + I+   N+++M +   S+ +            
Sbjct: 858  NINLCDMCVILSANQN-NIDDTSLQDKECILASLNIKSM-QFDDSIGVLQANSQGFTPPG 915

Query: 920  -ELTHPSNMRFMQFRAKDSYSLALSKLEKRERENGSNLAFM-------------FRLPFA 965
             + + P N        + S +  ++     E  N +N+ F+                PFA
Sbjct: 916  MDRSSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFA 975

Query: 966  AGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTP 1002
             G  F++S+LD+L+  ++  D ++T+ R L+    TP
Sbjct: 976  CGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATP 1012



 Score = 34.7 bits (78), Expect = 0.58
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 12/73 (16%)

Query: 1174 QNTLSYVLINPPPDTRLEPSDIVY-LIRSD--------PLAHVASSSQ--SRKSSCSHKL 1222
            Q T  YV+ NPP +  L P+D+++ L++ D         L+H + SSQ  S+KSS  H +
Sbjct: 1092 QCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQSRASLSHSSHSSQSSSKKSSSVHSI 1151

Query: 1223 -SSCNPETRDETQ 1234
             S+ N + R +++
Sbjct: 1152 PSTANRQNRPKSR 1164


>gi|157074214 potassium channel, subfamily U, member 1 [Homo
           sapiens]
          Length = 1149

 Score =  112 bits (280), Expect = 2e-24
 Identities = 113/461 (24%), Positives = 207/461 (44%), Gaps = 54/461 (11%)

Query: 209 RVSFVLEMINTLPFIITIFWPPLRNLFIPVFLNC-WLAKHALENM-------INDFHRAI 260
           ++ F LEM N++  I TI  PP    FI  +L   WL    L  +       I    RAI
Sbjct: 163 KIKFWLEM-NSIVDIFTI--PPT---FISYYLKSNWLGLRFLRALRLLELPQILQILRAI 216

Query: 261 LRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGE---------NLSLLTSFYFCIVT 311
             + S  F+++L +   +L   FT    I  +E +G+         N+S   S Y  + T
Sbjct: 217 KTSNSVKFSKLLSI---ILSTWFTAAGFIHLVENSGDPWLKGRNSQNISYFESIYLVMAT 273

Query: 312 FSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLWMERQKSGGNYSRHRAQTE 371
            STVG+GDV  K    +  ++     +L++      E+V L+  ++K   +Y   + +  
Sbjct: 274 TSTVGFGDVVAKTSLGRTFIMFFTLGSLILFANYIPEMVELFANKRKYTSSYEALKGK-- 331

Query: 372 KHVVLCVSSLKIDLLMDFLNEFYAHPRLQ-DYYVVILCPTEMDVQVRRVLQIPLWSQRVI 430
           K +V+C  ++ +D +  FL  F      + +  +V L  T   +++  + +  L      
Sbjct: 332 KFIVVC-GNITVDSVTAFLRNFLRDKSGEINTEIVFLGETPPSLELETIFKCYL--AYTT 388

Query: 431 YLQGSALKDQDLMRAKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQ 490
           ++ GSA+K +DL R  +++ EAC I+++    D  A D   I+R  ++K++     + +Q
Sbjct: 389 FISGSAMKWEDLRRVAVESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQ 448

Query: 491 ILKPENKFHV--------KFADHVVCEEECKYAMLALNCICPATSTLITLLVHTSRGQEG 542
           IL+  NK ++           D+++C  E K   +A  C+ P   T +T L      Q  
Sbjct: 449 ILQSHNKVYLPKIPSWNWDTGDNIICFAELKLGFIAQGCLVPGLCTFLTSLFVE---QNK 505

Query: 543 QESPEQ-WQRMYGRCSGNEVYHIRMGDSKFFREYEGKSFTYAAFHAHKKYGVCLIGLK-- 599
           +  P+Q W++ +     N++   R+ D     ++ G SF   A     K  + LI ++  
Sbjct: 506 KVMPKQTWKKHFLNSMKNKILTQRLSD-----DFAGMSFPEVARLCFLKMHLLLIAIEYK 560

Query: 600 ---REDNKSILLNPGPRHILAASDTCFYINITKEENSAFIF 637
               +    ++LNP P+  +  +   F+I  T ++    +F
Sbjct: 561 SLFTDGFCGLILNPPPQVRIRKNTLGFFIAETPKDVRRALF 601



 Score = 57.8 bits (138), Expect = 6e-08
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 43/231 (18%)

Query: 796 YGFKNKLIIV---SAETAGNGLYNFIVPLRAYYRSRKELNPIVLLLDNKPDHHFLEAICC 852
           Y F+N ++      A +A  GL NF++PLRA   +RKEL  IV +            +  
Sbjct: 710 YKFRNHIVACVFGDAHSAPMGLRNFVMPLRASNYTRKELKDIVFIGSLDYLQREWRFLWN 769

Query: 853 FPMVYYMEG--------SVDNLDSLLQCGIIY-----ADNLVVVDKESTM------SAEE 893
           FP +Y + G           N++    C ++      + N  +VD E+ M      S + 
Sbjct: 770 FPQIYILPGCALYSGDLHAANIEQCSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQI 829

Query: 894 DYMADAKTIVNVQTMFRL--------FPSLSITTELTHPSNMRFMQFRAKDSYSLALSKL 945
           D  +D    V+ +T               + I TEL +PSN+ F++          L  L
Sbjct: 830 DSSSDPSPSVSEETPGYTNGHNEKSNCRKVPILTELKNPSNIHFIE---------QLGGL 880

Query: 946 EKRERENGSNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLL 996
           E   +E   +L+      F+ G VFS S LD+LL  +F   +++ + ++L+
Sbjct: 881 EGSLQETNLHLS----TAFSTGTVFSGSFLDSLLATAFYNYHVLELLQMLV 927


>gi|4504847 potassium channel, subfamily K, member 1 [Homo sapiens]
          Length = 336

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 266 AMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTP 322
           A+ + VL+ F T+ C  F        LE   ++ + L SFYFC ++ ST+G GD  P
Sbjct: 180 AIVHAVLLGFVTVSCFFFIPAAVFSVLE---DDWNFLESFYFCFISLSTIGLGDYVP 233


>gi|27436996 potassium voltage-gated channel, subfamily G, member 4
           [Homo sapiens]
          Length = 519

 Score = 40.0 bits (92), Expect = 0.014
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 271 VLILFCTLLCLVFTGTCGIQHLE--RAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQ 328
           +L+LF  +   +F+    +   E  R  E  S+  S+++ I++ +TVGYGD+ P+  P Q
Sbjct: 373 LLLLFLAVAITLFSPLVYVAEKESGRVLEFTSIPASYWWAIISMTTVGYGDMVPRSVPGQ 432

Query: 329 LLVVIMICVALVVL 342
           ++ +  I   ++++
Sbjct: 433 MVALSSILSGILIM 446


>gi|24497460 Shaw-related voltage-gated potassium channel protein 3
           [Homo sapiens]
          Length = 757

 Score = 39.7 bits (91), Expect = 0.018
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGEN------------LSLLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G +             ++   F
Sbjct: 435 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGF 494

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ PK W   L+        V+ I + + V+   F     L M +QK
Sbjct: 495 WWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 554

Query: 359 SGGNYSRH 366
                ++H
Sbjct: 555 LPKKKNKH 562


>gi|4758624 potassium channel, subfamily K, member 6 [Homo sapiens]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.018
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)

Query: 271 VLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQ-- 328
           V++  C L+  V        HLE A    S L +FYFC ++ ST+G GD  P   P Q  
Sbjct: 179 VVVTVCFLVPAVI-----FAHLEEAW---SFLDAFYFCFISLSTIGLGDYVPGEAPGQPY 230

Query: 329 -----LLVVIMICVALVVLPL 344
                +LV + + + LV + L
Sbjct: 231 RALYKVLVTVYLFLGLVAMVL 251


>gi|88758576 Shaw-related voltage-gated potassium channel protein 4
           isoform c [Homo sapiens]
          Length = 626

 Score = 39.7 bits (91), Expect = 0.018
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLS------------LLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G   S            +   F
Sbjct: 368 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGF 427

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ PK W   L+        V+ I + + V+   F     L M +QK
Sbjct: 428 WWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 487

Query: 359 SGGNYSRH 366
                 +H
Sbjct: 488 LPKKRKKH 495


>gi|24497462 Shaw-related voltage-gated potassium channel protein 4
           isoform a [Homo sapiens]
          Length = 635

 Score = 39.7 bits (91), Expect = 0.018
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLS------------LLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G   S            +   F
Sbjct: 368 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGF 427

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ PK W   L+        V+ I + + V+   F     L M +QK
Sbjct: 428 WWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 487

Query: 359 SGGNYSRH 366
                 +H
Sbjct: 488 LPKKRKKH 495


>gi|24497464 Shaw-related voltage-gated potassium channel protein 4
           isoform b [Homo sapiens]
          Length = 582

 Score = 39.7 bits (91), Expect = 0.018
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLS------------LLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G   S            +   F
Sbjct: 368 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGF 427

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ PK W   L+        V+ I + + V+   F     L M +QK
Sbjct: 428 WWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 487

Query: 359 SGGNYSRH 366
                 +H
Sbjct: 488 LPKKRKKH 495


>gi|27436974 potassium voltage-gated channel, Shab-related
           subfamily, member 2 [Homo sapiens]
          Length = 911

 Score = 38.1 bits (87), Expect = 0.052
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 15/189 (7%)

Query: 183 VAIISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLFIPVFLNC 242
           V I  F    LL +LS   N W+       V++++  LP+ +TIF     N  +  F N 
Sbjct: 239 VCIAWFTMEYLLRFLS-SPNKWKFFKGPLNVIDLLAILPYYVTIFLTE-SNKSVLQFQNV 296

Query: 243 WLAKHALENM----INDFHRAILRTQSAMFNQ--------VLILFCTLLCLVFTGTCGIQ 290
                    M    I    R     QS  F          +LILF  +  ++F+      
Sbjct: 297 RRVVQIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFA 356

Query: 291 HL-ERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEEL 349
              E A +  S+  SF++  +T +TVGYGD+ PK    +++  +     ++V+ L    +
Sbjct: 357 EKDEDATKFTSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPII 416

Query: 350 VYLWMERQK 358
           V  + E  K
Sbjct: 417 VNNFSEFYK 425


>gi|4504849 potassium channel, subfamily K, member 3 [Homo sapiens]
          Length = 394

 Score = 37.7 bits (86), Expect = 0.068
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 262 RTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGD 319
           R   +M N VLI F + +  +  G     H E    + +   ++Y+C +T +T+G+GD
Sbjct: 151 RADVSMANMVLIGFFSCISTLCIGAAAFSHYE----HWTFFQAYYYCFITLTTIGFGD 204



 Score = 32.3 bits (72), Expect = 2.9
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 294 RAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLW 353
           +AG       SFYF I   +T+GYG   P     ++  +    + + +  + F+ L    
Sbjct: 73  KAGVQWRFAGSFYFAITVITTIGYGHAAPSTDGGKVFCMFYALLGIPLTLVMFQSL---- 128

Query: 354 MERQKSGGNYSRHRAQ 369
            ER  +   Y  HRA+
Sbjct: 129 GERINTLVRYLLHRAK 144


>gi|16306555 potassium channel, subfamily K, member 13 [Homo
           sapiens]
          Length = 408

 Score = 37.7 bits (86), Expect = 0.068
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 271 VLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDV 320
           V+++ CT   L+   +C    +    E  S   S YFC V FST+G+GD+
Sbjct: 197 VMLILCTASILI---SCCASAMYTPIEGWSYFDSLYFCFVAFSTIGFGDL 243


>gi|21217561 Shaw-related voltage-gated potassium channel protein 2
           isoform KV3.2a [Homo sapiens]
          Length = 613

 Score = 37.7 bits (86), Expect = 0.068
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGEN------------LSLLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G               ++   F
Sbjct: 369 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGF 428

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ P+ W   L+        V+ I + + V+   F     L M +QK
Sbjct: 429 WWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 488

Query: 359 SGGNYSRH 366
                 +H
Sbjct: 489 LPRKRKKH 496


>gi|21217563 Shaw-related voltage-gated potassium channel protein 2
           isoform KV3.2b [Homo sapiens]
          Length = 638

 Score = 37.7 bits (86), Expect = 0.068
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGEN------------LSLLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G               ++   F
Sbjct: 369 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGF 428

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ P+ W   L+        V+ I + + V+   F     L M +QK
Sbjct: 429 WWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 488

Query: 359 SGGNYSRH 366
                 +H
Sbjct: 489 LPRKRKKH 496


>gi|24497458 Shaw-related voltage-gated potassium channel protein 2
           isoform KV3.2c [Homo sapiens]
          Length = 558

 Score = 37.7 bits (86), Expect = 0.068
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGEN------------LSLLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G               ++   F
Sbjct: 369 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGF 428

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ P+ W   L+        V+ I + + V+   F     L M +QK
Sbjct: 429 WWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 488

Query: 359 SGGNYSRH 366
                 +H
Sbjct: 489 LPRKRKKH 496


>gi|4826786 Shaw-related voltage-gated potassium channel protein 1
           isoform B [Homo sapiens]
          Length = 511

 Score = 37.4 bits (85), Expect = 0.089
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGEN------------LSLLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G               ++   F
Sbjct: 332 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGF 391

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ P+ W   L+        V+ I + + V+   F     L M +QK
Sbjct: 392 WWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 451

Query: 359 SGGNYSRH 366
                 +H
Sbjct: 452 LPKKKKKH 459


>gi|163792201 Shaw-related voltage-gated potassium channel protein 1
           isoform A [Homo sapiens]
          Length = 585

 Score = 37.4 bits (85), Expect = 0.089
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 258 RAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGEN------------LSLLTSF 305
           R +  T  A  N+ L+L   L   V      I + ER G               ++   F
Sbjct: 332 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGF 391

Query: 306 YFCIVTFSTVGYGDVTPKIWPSQLL-------VVIMICVALVVLPLQFEELVYLWMERQK 358
           ++ +VT +T+GYGD+ P+ W   L+        V+ I + + V+   F     L M +QK
Sbjct: 392 WWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 451

Query: 359 SGGNYSRH 366
                 +H
Sbjct: 452 LPKKKKKH 459


>gi|156616271 kinesin family member 19 [Homo sapiens]
          Length = 998

 Score = 37.4 bits (85), Expect = 0.089
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 20/96 (20%)

Query: 639 QEEKRKKRAF--SGQGLHE------GPA--------RLPV--HSI--IASMGTVAMDLQG 678
           +  KR+ R+F  +GQGL        GP         R+PV  H    I  +G V + L  
Sbjct: 887 KRRKRRSRSFEVTGQGLSHPKTHLLGPHQAERISDHRMPVCRHPAPGIRHLGKVTLPLAK 946

Query: 679 TEHRPTQSGGGGGGSKLALPTENGSGSRRPSIAPVL 714
            +  P+Q+ G G  S LA+P   G GSRR +  P L
Sbjct: 947 VKLPPSQNTGPGDSSPLAVPPNPGGGSRRATRGPRL 982


>gi|27436984 potassium voltage-gated channel, Shal-related
           subfamily, member 3 isoform 1 [Homo sapiens]
          Length = 655

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 272 LILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLV 331
           +I+F T++     G+        A +  S+  SF++ IVT +T+GYGD+ PK    ++  
Sbjct: 332 IIIFATVMFYAEKGSS-------ASKFTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFG 384

Query: 332 VIMICVALVVLPLQFEELVYLWMERQKSGGNYSRHRAQ 369
            I     ++V+ L    +V  +           + RAQ
Sbjct: 385 SICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQ 422


>gi|27436986 potassium voltage-gated channel, Shal-related
           subfamily, member 3 isoform 2 [Homo sapiens]
          Length = 636

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 272 LILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLV 331
           +I+F T++     G+        A +  S+  SF++ IVT +T+GYGD+ PK    ++  
Sbjct: 332 IIIFATVMFYAEKGSS-------ASKFTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFG 384

Query: 332 VIMICVALVVLPLQFEELVYLWMERQKSGGNYSRHRAQ 369
            I     ++V+ L    +V  +           + RAQ
Sbjct: 385 SICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQ 422


>gi|27436993 potassium voltage-gated channel, subfamily G, member 3
           isoform 2 [Homo sapiens]
          Length = 425

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 271 VLILFCTLLCLVFTGTCGIQH---LERAGENL-SLLTSFYFCIVTFSTVGYGDVTPKIWP 326
           +L+  C  + +    +  ++H   LE + ++  S+  + ++ I++ +TVGYGD+ P   P
Sbjct: 315 LLVFICVAMAIFSALSQLLEHGLDLETSNKDFTSIPAACWWVIISMTTVGYGDMYPITVP 374

Query: 327 SQLL--VVIMICVALVVLPLQF--EELVYLWMERQKSGGNYSR 365
            ++L  V ++  + L+ LP+ F     V  + E +     YSR
Sbjct: 375 GRILGGVCVVSGIVLLALPITFIYHSFVQCYHELKFRSARYSR 417


>gi|19071574 potassium voltage-gated channel, subfamily G, member 3
           isoform 1 [Homo sapiens]
          Length = 436

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 271 VLILFCTLLCLVFTGTCGIQH---LERAGENL-SLLTSFYFCIVTFSTVGYGDVTPKIWP 326
           +L+  C  + +    +  ++H   LE + ++  S+  + ++ I++ +TVGYGD+ P   P
Sbjct: 326 LLVFICVAMAIFSALSQLLEHGLDLETSNKDFTSIPAACWWVIISMTTVGYGDMYPITVP 385

Query: 327 SQLL--VVIMICVALVVLPLQF--EELVYLWMERQKSGGNYSR 365
            ++L  V ++  + L+ LP+ F     V  + E +     YSR
Sbjct: 386 GRILGGVCVVSGIVLLALPITFIYHSFVQCYHELKFRSARYSR 428


>gi|27436988 potassium voltage-gated channel, subfamily G, member 1
           [Homo sapiens]
          Length = 513

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 271 VLILFCTLLCLVFTGTCGIQHLERAG--ENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQ 328
           +L+LF  +   +F     +   E A   E  S+   +++ ++T +TVGYGD+ P+  P Q
Sbjct: 379 LLLLFLCVAIALFAPLLYVIENEMADSPEFTSIPACYWWAVITMTTVGYGDMVPRSTPGQ 438

Query: 329 LLVVIMICVALVVL 342
           ++ +  I   ++++
Sbjct: 439 VVALSSILSGILLM 452


>gi|20070166 potassium voltage-gated channel, subfamily F, member 1
           [Homo sapiens]
          Length = 494

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 300 SLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELV 350
           S+  SF++ I+T +TVGYGD+ PK    +L   I     ++ + L    ++
Sbjct: 356 SIPQSFWWAIITMTTVGYGDIYPKTTLGKLNAAISFLCGVIAIALPIHPII 406


>gi|11545761 potassium channel, subfamily K, member 12 [Homo
           sapiens]
          Length = 430

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 271 VLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDV 320
           +L LF  LL      +C    +  + E    + S YFC VTFST+G+GD+
Sbjct: 219 ILGLFAVLL------SCCASAMYTSVEGWDYVDSLYFCFVTFSTIGFGDL 262


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,005,225
Number of Sequences: 37866
Number of extensions: 2296342
Number of successful extensions: 6734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 6595
Number of HSP's gapped (non-prelim): 156
length of query: 1235
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1121
effective length of database: 13,930,794
effective search space: 15616420074
effective search space used: 15616420074
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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