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Search of human proteins with 239757952
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757952 PREDICTED: similar to hCG2041502 [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757952 PREDICTED: similar to hCG2041502 [Homo sapiens] 397 e-111
gi|239752463 PREDICTED: hypothetical protein XP_002348284 [Homo ... 397 e-111
gi|239746988 PREDICTED: hypothetical protein XP_002344243 [Homo ... 385 e-107
gi|239757954 PREDICTED: similar to hCG1818242 [Homo sapiens] 132 1e-31
gi|239752461 PREDICTED: hypothetical protein XP_002348283 [Homo ... 132 1e-31
gi|239746990 PREDICTED: hypothetical protein XP_002344480 [Homo ... 132 1e-31
gi|154146216 pleckstrin homology domain containing, family A (ph... 32 0.33
gi|34577118 dopey family member 1 [Homo sapiens] 29 2.2
gi|51173722 bromodomain and PHD finger-containing protein 1 isof... 28 4.8
gi|51173720 bromodomain and PHD finger-containing protein 1 isof... 28 4.8
gi|18201913 forkhead box N1 [Homo sapiens] 28 4.8
gi|253795481 plexin B3 isoform 2 [Homo sapiens] 28 6.3
gi|29336063 plexin B3 isoform 1 [Homo sapiens] 28 6.3
gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens] 28 6.3
gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens] 28 6.3
gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens] 28 6.3
gi|40353727 synaptopodin isoform A [Homo sapiens] 28 6.3
gi|41281564 WD repeat domain 37 [Homo sapiens] 28 6.3
gi|38348414 von Willebrand factor C domain containing 2 [Homo sa... 28 6.3
gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo ... 27 8.2
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 27 8.2
gi|94981556 transglutaminase 5 isoform 1 [Homo sapiens] 27 8.2
gi|4759230 transglutaminase 5 isoform 2 [Homo sapiens] 27 8.2
gi|190886435 RALBP1 associated Eps domain containing 1 isoform a... 27 8.2
gi|190886437 RALBP1 associated Eps domain containing 1 isoform b... 27 8.2
gi|109452595 zinc finger protein 205 [Homo sapiens] 27 8.2
gi|109452593 zinc finger protein 205 [Homo sapiens] 27 8.2
>gi|239757952 PREDICTED: similar to hCG2041502 [Homo sapiens]
Length = 192
Score = 397 bits (1020), Expect = e-111
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE
Sbjct: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
Query: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV
Sbjct: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
Query: 121 VPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADILC 180
VPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADILC
Sbjct: 121 VPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADILC 180
Query: 181 EASQNSPSGLVP 192
EASQNSPSGLVP
Sbjct: 181 EASQNSPSGLVP 192
>gi|239752463 PREDICTED: hypothetical protein XP_002348284 [Homo
sapiens]
Length = 192
Score = 397 bits (1020), Expect = e-111
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE
Sbjct: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
Query: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV
Sbjct: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
Query: 121 VPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADILC 180
VPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADILC
Sbjct: 121 VPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADILC 180
Query: 181 EASQNSPSGLVP 192
EASQNSPSGLVP
Sbjct: 181 EASQNSPSGLVP 192
>gi|239746988 PREDICTED: hypothetical protein XP_002344243 [Homo
sapiens]
Length = 212
Score = 385 bits (989), Expect = e-107
Identities = 192/212 (90%), Positives = 192/212 (90%), Gaps = 20/212 (9%)
Query: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE
Sbjct: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
Query: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV
Sbjct: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
Query: 121 VPPHDMKHVHSWEPNSK--------------------IMGLSCGSHRKDRGESTANAPPS 160
VPPHDMKHVHSWEPNSK IMGLSCGSHRKDRGESTANAPPS
Sbjct: 121 VPPHDMKHVHSWEPNSKLIQVVLQTHLLSGSHVPPHRIMGLSCGSHRKDRGESTANAPPS 180
Query: 161 RSPSLPSCMDLLLGNADILCEASQNSPSGLVP 192
RSPSLPSCMDLLLGNADILCEASQNSPSGLVP
Sbjct: 181 RSPSLPSCMDLLLGNADILCEASQNSPSGLVP 212
>gi|239757954 PREDICTED: similar to hCG1818242 [Homo sapiens]
Length = 114
Score = 132 bits (333), Expect = 1e-31
Identities = 75/139 (53%), Positives = 82/139 (58%), Gaps = 43/139 (30%)
Query: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
MKTQDDG+LPP+DVKQL WDLNLSLFLGLCLMLLLAAS LP P IMGLSH NRED QE
Sbjct: 1 MKTQDDGVLPPYDVKQLRGWDLNLSLFLGLCLMLLLAASCLPFPGIMGLSHRSNREDSQE 60
Query: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
STADAPP RI SQED
Sbjct: 61 STADAPP-------------------------------------------QRIKSQEDGE 77
Query: 121 VPPHDMKHVHSWEPNSKIM 139
V P+D+KHV SWEPNS+++
Sbjct: 78 VSPNDVKHVRSWEPNSRLI 96
Score = 44.3 bits (103), Expect = 6e-05
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 20/70 (28%)
Query: 115 SQEDVVVPPHDMKHVHSWEPNSK--------------------IMGLSCGSHRKDRGEST 154
+Q+D V+PP+D+K + W+ N IMGLS S+R+D EST
Sbjct: 3 TQDDGVLPPYDVKQLRGWDLNLSLFLGLCLMLLLAASCLPFPGIMGLSHRSNREDSQEST 62
Query: 155 ANAPPSRSPS 164
A+APP R S
Sbjct: 63 ADAPPQRIKS 72
>gi|239752461 PREDICTED: hypothetical protein XP_002348283 [Homo
sapiens]
Length = 114
Score = 132 bits (333), Expect = 1e-31
Identities = 75/139 (53%), Positives = 82/139 (58%), Gaps = 43/139 (30%)
Query: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
MKTQDDG+LPP+DVKQL WDLNLSLFLGLCLMLLLAAS LP P IMGLSH NRED QE
Sbjct: 1 MKTQDDGVLPPYDVKQLRGWDLNLSLFLGLCLMLLLAASCLPFPGIMGLSHRSNREDSQE 60
Query: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
STADAPP RI SQED
Sbjct: 61 STADAPP-------------------------------------------QRIKSQEDGE 77
Query: 121 VPPHDMKHVHSWEPNSKIM 139
V P+D+KHV SWEPNS+++
Sbjct: 78 VSPNDVKHVRSWEPNSRLI 96
Score = 44.3 bits (103), Expect = 6e-05
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 20/70 (28%)
Query: 115 SQEDVVVPPHDMKHVHSWEPNSK--------------------IMGLSCGSHRKDRGEST 154
+Q+D V+PP+D+K + W+ N IMGLS S+R+D EST
Sbjct: 3 TQDDGVLPPYDVKQLRGWDLNLSLFLGLCLMLLLAASCLPFPGIMGLSHRSNREDSQEST 62
Query: 155 ANAPPSRSPS 164
A+APP R S
Sbjct: 63 ADAPPQRIKS 72
>gi|239746990 PREDICTED: hypothetical protein XP_002344480 [Homo
sapiens]
Length = 114
Score = 132 bits (333), Expect = 1e-31
Identities = 75/139 (53%), Positives = 82/139 (58%), Gaps = 43/139 (30%)
Query: 1 MKTQDDGLLPPHDVKQLLDWDLNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQE 60
MKTQDDG+LPP+DVKQL WDLNLSLFLGLCLMLLLAAS LP P IMGLSH NRED QE
Sbjct: 1 MKTQDDGVLPPYDVKQLRGWDLNLSLFLGLCLMLLLAASCLPFPGIMGLSHRSNREDSQE 60
Query: 61 STADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVV 120
STADAPP RI SQED
Sbjct: 61 STADAPP-------------------------------------------QRIKSQEDGE 77
Query: 121 VPPHDMKHVHSWEPNSKIM 139
V P+D+KHV SWEPNS+++
Sbjct: 78 VSPNDVKHVRSWEPNSRLI 96
Score = 44.3 bits (103), Expect = 6e-05
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 20/70 (28%)
Query: 115 SQEDVVVPPHDMKHVHSWEPNSK--------------------IMGLSCGSHRKDRGEST 154
+Q+D V+PP+D+K + W+ N IMGLS S+R+D EST
Sbjct: 3 TQDDGVLPPYDVKQLRGWDLNLSLFLGLCLMLLLAASCLPFPGIMGLSHRSNREDSQEST 62
Query: 155 ANAPPSRSPS 164
A+APP R S
Sbjct: 63 ADAPPQRIKS 72
>gi|154146216 pleckstrin homology domain containing, family A
(phosphoinositide binding specific) member 2 [Homo
sapiens]
Length = 425
Score = 32.0 bits (71), Expect = 0.33
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 72 YLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHTLCSRITSQEDVVVPPHDMKHVHS 131
Y +D + L +L + +C++ DL+ L ITS V + +HS
Sbjct: 229 YFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTFYVQADSPEDMHS 288
Query: 132 W--EPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADILC 180
W E + + L C H ++ S S S + P L G ILC
Sbjct: 289 WIKEIGAAVQALKC--HPRETSFSR-----SISLTRPGSSSLSSGPNSILC 332
>gi|34577118 dopey family member 1 [Homo sapiens]
Length = 2465
Score = 29.3 bits (64), Expect = 2.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 39 SRLPSPRIMGLSHGYNREDRQESTADAPPWKSLYLPSCRDLSLA 82
SR P + GL Y + ++ ++ W +LYL +C+ L LA
Sbjct: 2265 SRTSGPSVAGLETTYTGGNGFSTSYNSQRWLNLYLSACKFLDLA 2308
>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform
2 [Homo sapiens]
Length = 1214
Score = 28.1 bits (61), Expect = 4.8
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 45 RIMGLSHGYNREDRQESTADAPPWKSLYLPSCRDLSLAKVKLLDPIL--HSADCILTPSD 102
R+ LSH ED E + W S + + S K+K IL A +
Sbjct: 455 RLPALSHSEGEEDEDEEEDEGKGWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVP 514
Query: 103 LIAAHTLCSRITSQEDVVVPPHDMKHVHSW 132
I H L S+IT++ + M+ +HS+
Sbjct: 515 CIPPHRL-SKITNRLTIQRKSQFMQRLHSY 543
>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform
1 [Homo sapiens]
Length = 1220
Score = 28.1 bits (61), Expect = 4.8
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 45 RIMGLSHGYNREDRQESTADAPPWKSLYLPSCRDLSLAKVKLLDPIL--HSADCILTPSD 102
R+ LSH ED E + W S + + S K+K IL A +
Sbjct: 455 RLPALSHSEGEEDEDEEEDEGKGWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVP 514
Query: 103 LIAAHTLCSRITSQEDVVVPPHDMKHVHSW 132
I H L S+IT++ + M+ +HS+
Sbjct: 515 CIPPHRL-SKITNRLTIQRKSQFMQRLHSY 543
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 28.1 bits (61), Expect = 4.8
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 134 PNSKIMGLSCGSHRKDRGESTANAPPSRSPSLP 166
P SK G SC S D PP R+PSLP
Sbjct: 39 PQSKHAGFSCSSFVSD-------GPPERTPSLP 64
>gi|253795481 plexin B3 isoform 2 [Homo sapiens]
Length = 1932
Score = 27.7 bits (60), Expect = 6.3
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 29 GLCLMLLLAASRLPSPRIMGLSHGYNREDRQ-ESTADAPPWKSLYLPSCR-------DLS 80
GLCL+LLL + P P + +H ++ + A AP +LY+ + +L
Sbjct: 49 GLCLLLLLLS---PPPLPLTGAHRFSAPNTTLNHLALAPGRGTLYVGAVNRLFQLSPELQ 105
Query: 81 LAKVKLLDPILHSADCI 97
L V + P++ S DC+
Sbjct: 106 LEAVAVTGPVIDSPDCV 122
>gi|29336063 plexin B3 isoform 1 [Homo sapiens]
Length = 1909
Score = 27.7 bits (60), Expect = 6.3
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 29 GLCLMLLLAASRLPSPRIMGLSHGYNREDRQ-ESTADAPPWKSLYLPSCR-------DLS 80
GLCL+LLL + P P + +H ++ + A AP +LY+ + +L
Sbjct: 26 GLCLLLLLLS---PPPLPLTGAHRFSAPNTTLNHLALAPGRGTLYVGAVNRLFQLSPELQ 82
Query: 81 LAKVKLLDPILHSADCI 97
L V + P++ S DC+
Sbjct: 83 LEAVAVTGPVIDSPDCV 99
>gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]
Length = 1399
Score = 27.7 bits (60), Expect = 6.3
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 120 VVPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADIL 179
+VP + S P S ++ + + + T A +SP + + +GN ++
Sbjct: 1237 MVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQTPPASGYQSPDMKAWQQGAIGNNNVF 1296
Query: 180 CEASQNSPSGLVP 192
+A QN P+ P
Sbjct: 1297 SQAVQNQPTPAQP 1309
>gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]
Length = 1440
Score = 27.7 bits (60), Expect = 6.3
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 120 VVPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADIL 179
+VP + S P S ++ + + + T A +SP + + +GN ++
Sbjct: 1237 MVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQTPPASGYQSPDMKAWQQGAIGNNNVF 1296
Query: 180 CEASQNSPSGLVP 192
+A QN P+ P
Sbjct: 1297 SQAVQNQPTPAQP 1309
>gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]
Length = 1441
Score = 27.7 bits (60), Expect = 6.3
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 120 VVPPHDMKHVHSWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLPSCMDLLLGNADIL 179
+VP + S P S ++ + + + T A +SP + + +GN ++
Sbjct: 1237 MVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQTPPASGYQSPDMKAWQQGAIGNNNVF 1296
Query: 180 CEASQNSPSGLVP 192
+A QN P+ P
Sbjct: 1297 SQAVQNQPTPAQP 1309
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 27.7 bits (60), Expect = 6.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 38 ASRLPSPRIMGLSHGYNREDRQESTADAPPW 68
A + P P + G +DR+ES +PPW
Sbjct: 658 AKQAPRPSFSTRNAGIEAQDRRESLPTSPPW 688
>gi|41281564 WD repeat domain 37 [Homo sapiens]
Length = 494
Score = 27.7 bits (60), Expect = 6.3
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 49 LSHGYNREDRQESTADAPPWKSLYLPSCRDLSLAKVKLLDPILHSADCILTPSDLIAAHT 108
L H D++ + P + L + S RD + DP +HS + +D T
Sbjct: 315 LVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTD-----T 369
Query: 109 LCSRITSQEDVVVPPHDMKHVHSWE 133
+ S + + D VV D + V W+
Sbjct: 370 VTSAVFTVGDNVVSGSDDRTVKVWD 394
>gi|38348414 von Willebrand factor C domain containing 2 [Homo
sapiens]
Length = 325
Score = 27.7 bits (60), Expect = 6.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 22 LNLSLFLGLCLMLLLAASRLPSPRIMGLSHGYNREDRQESTADAP 66
L+ SL + CLM+ L + +P ++ +E R+ +T D P
Sbjct: 12 LSSSLLVTCCLMVALCSPSIPLEKLAQAPEQPGQEKREHATRDGP 56
>gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo
sapiens]
Length = 177
Score = 27.3 bits (59), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 131 SWEPNSKIMGLSCGSHRKDRGESTANAPPSRSPSLP 166
+W+P+ +C S KD +++ PPS P+ P
Sbjct: 115 AWKPSPA----NCSSSGKDEAAASSTTPPSMGPAAP 146
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 27.3 bits (59), Expect = 8.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 153 STANAPPSRSPSLPSCMDLLLGNADILCEASQNSPS 188
+TA+APPS SP D LG D L + S S
Sbjct: 1739 ATASAPPSSSPGRSHSKDRTLGKPDSLLVPAVTSDS 1774
>gi|94981556 transglutaminase 5 isoform 1 [Homo sapiens]
Length = 720
Score = 27.3 bits (59), Expect = 8.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 84 VKLLDPILH-----SADCILTPSDLIAAHTLCSRITSQED 118
+KLLD LH + DC L S + + +C+ I S +D
Sbjct: 195 LKLLDKSLHFQTDPATDCALRGSPVYVSRVVCAMINSNDD 234
>gi|4759230 transglutaminase 5 isoform 2 [Homo sapiens]
Length = 638
Score = 27.3 bits (59), Expect = 8.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 84 VKLLDPILH-----SADCILTPSDLIAAHTLCSRITSQED 118
+KLLD LH + DC L S + + +C+ I S +D
Sbjct: 113 LKLLDKSLHFQTDPATDCALRGSPVYVSRVVCAMINSNDD 152
>gi|190886435 RALBP1 associated Eps domain containing 1 isoform a
[Homo sapiens]
Length = 795
Score = 27.3 bits (59), Expect = 8.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 153 STANAPPSRSPSLPS 167
S A APPS+SPS+PS
Sbjct: 392 SPAEAPPSKSPSMPS 406
>gi|190886437 RALBP1 associated Eps domain containing 1 isoform b
[Homo sapiens]
Length = 769
Score = 27.3 bits (59), Expect = 8.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 153 STANAPPSRSPSLPS 167
S A APPS+SPS+PS
Sbjct: 392 SPAEAPPSKSPSMPS 406
>gi|109452595 zinc finger protein 205 [Homo sapiens]
Length = 554
Score = 27.3 bits (59), Expect = 8.2
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 34 LLLAASRLPSPRIMGLSHGYNREDRQESTADAPPWKSL 71
L L LPSPRI LS DRQ + A W +
Sbjct: 85 LFLPGGALPSPRIPVLSREGRTRDRQMAAALLTAWSQM 122
>gi|109452593 zinc finger protein 205 [Homo sapiens]
Length = 554
Score = 27.3 bits (59), Expect = 8.2
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 34 LLLAASRLPSPRIMGLSHGYNREDRQESTADAPPWKSL 71
L L LPSPRI LS DRQ + A W +
Sbjct: 85 LFLPGGALPSPRIPVLSREGRTRDRQMAAALLTAWSQM 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,727,428
Number of Sequences: 37866
Number of extensions: 393914
Number of successful extensions: 992
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 39
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.