Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291366 Sequence: fasta or formatted (192aa) NCBI GI: 239752463
Description:

PREDICTED: hypothetical protein XP_002348284

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         12           2
 C cysteine            3.6          7           1
 D aspartate           8.3         16           2
 E glutamate           3.1          6           1
 F phenylalanine       0.5          1           1
 G glycine             4.7          9           1
 H histidine           4.2          8           1
 I isoleucine          3.6          7           1
 K lysine              4.2          8           1
 L leucine            16.7         32           3
 M methionine          3.1          6           1
 N asparagine          3.1          6           1
 P proline             9.4         18           2
 Q glutamine           2.6          5           1
 R arginine            4.7          9           1
 S serine             12.5         24           1
 T threonine           3.1          6           1
 V valine              3.6          7           3
 W tryptophan          1.6          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348284 
LOC100292128          1.000   PREDICTED: similar to hCG2041502 
LOC100287979          0.968   PREDICTED: hypothetical protein XP_002344243 
LOC100292255          0.288   PREDICTED: similar to hCG1818242 
LOC100291320          0.288   PREDICTED: hypothetical protein XP_002348283 
LOC100287735          0.288   PREDICTED: hypothetical protein XP_002344480 
PLEKHA2               0.019   pleckstrin homology domain containing, family A (ph...
DOPEY1                0.011   dopey family member 1 
BRPF1                 0.008   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.008   bromodomain and PHD finger-containing protein 1 isof...
FOXN1                 0.008   forkhead box N1 
PLXNB3                0.008   plexin B3 isoform 2 
PLXNB3                0.008   plexin B3 isoform 1 
NCOA1                 0.008   nuclear receptor coactivator 1 isoform 2 
NCOA1                 0.008   nuclear receptor coactivator 1 isoform 3 
NCOA1                 0.008   nuclear receptor coactivator 1 isoform 1 
SYNPO                 0.008   synaptopodin isoform A 
WDR37                 0.008   WD repeat domain 37 
VWC2                  0.008   von Willebrand factor C domain containing 2 
LOC100287141          0.005   PREDICTED: hypothetical protein XP_002343631 
ASH1L                 0.005   absent, small, or homeotic 1-like 
TGM5                  0.005   transglutaminase 5 isoform 1 
TGM5                  0.005   transglutaminase 5 isoform 2 
REPS1                 0.005   RALBP1 associated Eps domain containing 1 isoform a...
REPS1                 0.005   RALBP1 associated Eps domain containing 1 isoform b...
ZNF205                0.005   zinc finger protein 205 
ZNF205                0.005   zinc finger protein 205 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press