Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DOPEY1 Sequence: fasta or formatted (2465aa) NCBI GI: 34577118
Description:

dopey family member 1

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7        140           3
 C cysteine            1.6         39           2
 D aspartate           4.7        116           3
 E glutamate           6.7        164           2
 F phenylalanine       3.7         92           2
 G glycine             4.1        100           2
 H histidine           2.8         69           2
 I isoleucine          5.6        139           2
 K lysine              5.2        129           3
 L leucine            12.6        311           6
 M methionine          2.7         67           2
 N asparagine          4.1        100           2
 P proline             4.5        110           2
 Q glutamine           5.7        140           2
 R arginine            4.3        105           2
 S serine             10.6        261           3
 T threonine           5.5        135           3
 V valine              6.3        156           3
 W tryptophan          1.1         26           1
 Y tyrosine            2.7         66           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dopey family member 1 
DOPEY2                0.178   pad-1-like 
MYST3                 0.004   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.004   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.004   MYST histone acetyltransferase (monocytic leukemia)...
DSPP                  0.004   dentin sialophosphoprotein preproprotein 
C10orf92              0.003   hypothetical protein LOC54777 
NCOA7                 0.003   nuclear receptor coactivator 7 isoform 2 
KIN                   0.003   HsKin17 protein 
NCOA7                 0.003   nuclear receptor coactivator 7 isoform 1 
BPTF                  0.003   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.003   bromodomain PHD finger transcription factor isoform ...
NRIP1                 0.003   nuclear receptor interacting protein 1 
ARL6IP4               0.003   SRp25 nuclear protein isoform 1 
RBBP6                 0.003   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.003   retinoblastoma-binding protein 6 isoform 1 
LOC729792             0.002   PREDICTED: hypothetical protein 
LOC729792             0.002   PREDICTED: hypothetical protein 
LOC729792             0.002   PREDICTED: hypothetical protein 
LOC100294501          0.002   PREDICTED: hypothetical protein 
LOC100294249          0.002   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.002   PREDICTED: hypothetical protein 
LOC100294204          0.002   PREDICTED: hypothetical protein 
LOC100294136          0.002   PREDICTED: hypothetical protein 
LOC100294091          0.002   PREDICTED: hypothetical protein 
LOC730401             0.002   PREDICTED: hypothetical protein 
FHAD1                 0.002   forkhead-associated (FHA) phosphopeptide binding do...
ARL6IP4               0.002   SRp25 nuclear protein isoform 4 
ARL6IP4               0.002   SRp25 nuclear protein isoform 3 
ARL6IP4               0.002   SRp25 nuclear protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press