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Search of human proteins with 239757949
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757949 PREDICTED: similar to CTL-recognized antigen on
melanoma (CAMEL) [Homo sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757949 PREDICTED: similar to CTL-recognized antigen on mel... 305 8e-84
gi|4503119 cancer/testis antigen 1B [Homo sapiens] 95 3e-20
gi|21281685 cancer/testis antigen 1A [Homo sapiens] 95 3e-20
gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] 94 5e-20
gi|239582765 ral guanine nucleotide dissociation stimulator-like... 35 0.019
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 35 0.025
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 35 0.025
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 35 0.025
gi|150378549 tangerin [Homo sapiens] 33 0.074
gi|239582763 ral guanine nucleotide dissociation stimulator-like... 33 0.097
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|112382377 ubiquitin-conjugating enzyme E2S [Homo sapiens] 32 0.22
gi|239757333 PREDICTED: hypothetical protein [Homo sapiens] 32 0.28
gi|239751837 PREDICTED: hypothetical protein [Homo sapiens] 32 0.28
gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo ... 32 0.28
gi|56676337 transmembrane protein 28 [Homo sapiens] 32 0.28
gi|145699105 connexin40.1 [Homo sapiens] 32 0.28
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap... 31 0.37
gi|19923629 Fc receptor-like 2 precursor [Homo sapiens] 31 0.37
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 31 0.48
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 31 0.48
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 31 0.48
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 0.48
gi|48762934 alpha 2 type I collagen [Homo sapiens] 30 0.63
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 30 0.63
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 30 0.82
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 30 0.82
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
>gi|239757949 PREDICTED: similar to CTL-recognized antigen on
melanoma (CAMEL) [Homo sapiens]
Length = 154
Score = 305 bits (782), Expect = 8e-84
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MLMAQEALAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRM 60
MLMAQEALAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRM
Sbjct: 1 MLMAQEALAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRM 60
Query: 61 EGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQEVGGRARSRLTAADHRQLQ 120
EGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQEVGGRARSRLTAADHRQLQ
Sbjct: 61 EGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQEVGGRARSRLTAADHRQLQ 120
Query: 121 LSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 154
LSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR
Sbjct: 121 LSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 154
>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
Length = 180
Score = 94.7 bits (234), Expect = 3e-20
Identities = 67/155 (43%), Positives = 73/155 (47%), Gaps = 45/155 (29%)
Query: 33 GAQGQQGPRG----REEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSG 88
GA G +GPRG R P G GAP GP G A+ + C G
Sbjct: 38 GATGGRGPRGAGAARASGPGG------------GAPRGPHGGAASGLNGCCRCGARGPES 85
Query: 89 GEV-------------GAVRRRQQGQEV----------------GGRARSRLTAADHRQL 119
+ + RR Q+ G RLTAADHRQL
Sbjct: 86 RLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKEFTVSGNILTIRLTAADHRQL 145
Query: 120 QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 154
QLSISSCLQQLSLLMWITQCFLPVFLAQ PSGQRR
Sbjct: 146 QLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
>gi|21281685 cancer/testis antigen 1A [Homo sapiens]
Length = 180
Score = 94.7 bits (234), Expect = 3e-20
Identities = 67/155 (43%), Positives = 73/155 (47%), Gaps = 45/155 (29%)
Query: 33 GAQGQQGPRG----REEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSG 88
GA G +GPRG R P G GAP GP G A+ + C G
Sbjct: 38 GATGGRGPRGAGAARASGPGG------------GAPRGPHGGAASGLNGCCRCGARGPES 85
Query: 89 GEV-------------GAVRRRQQGQEV----------------GGRARSRLTAADHRQL 119
+ + RR Q+ G RLTAADHRQL
Sbjct: 86 RLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKEFTVSGNILTIRLTAADHRQL 145
Query: 120 QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 154
QLSISSCLQQLSLLMWITQCFLPVFLAQ PSGQRR
Sbjct: 146 QLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
>gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens]
Length = 180
Score = 94.0 bits (232), Expect = 5e-20
Identities = 70/155 (45%), Positives = 72/155 (46%), Gaps = 45/155 (29%)
Query: 33 GAQGQQGPRG----REEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLG--- 85
GA G +GPRG R PRG GAP GP G A+ C
Sbjct: 38 GATGGRGPRGAGAARASGPRG------------GAPRGPHGGAASAQDGRCPCGARRPDS 85
Query: 86 -----------GSGGEVGAVRRRQQGQEV---------------GGRARSRLTAADHRQL 119
S E VRR G RLTAADHRQL
Sbjct: 86 RLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFIRLTAADHRQL 145
Query: 120 QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 154
QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR
Sbjct: 146 QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 180
>gi|239582765 ral guanine nucleotide dissociation stimulator-like 3
isoform 1 [Homo sapiens]
Length = 716
Score = 35.4 bits (80), Expect = 0.019
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 8 LAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAG- 66
LA L AQ + Q R+ R E P A PR R R++ L R +P+G
Sbjct: 481 LAALHAQNQLTEEQSYRLSRVIEPPAASCPSSPRIRRRISLTKRLSAKLAREKSSSPSGS 540
Query: 67 PGGRTAACFSCILFCSVLGGS 87
PG ++ S + SV GS
Sbjct: 541 PGDPSSPTSSLCISPSVSPGS 561
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 35.0 bits (79), Expect = 0.025
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 19 AAQERRVPRAAEVPGAQGQQ-GPRGREEAP-RGVRMAVP-----------LLRRMEGAPA 65
AA+ R PR ++ GA+GQ G GRE A R +M +P LR AP
Sbjct: 85 AAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPG 144
Query: 66 GPGGRTAAC 74
PGGR A C
Sbjct: 145 VPGGRVAPC 153
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 35.0 bits (79), Expect = 0.025
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 19 AAQERRVPRAAEVPGAQGQQ-GPRGREEAP-RGVRMAVP-----------LLRRMEGAPA 65
AA+ R PR ++ GA+GQ G GRE A R +M +P LR AP
Sbjct: 85 AAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPG 144
Query: 66 GPGGRTAAC 74
PGGR A C
Sbjct: 145 VPGGRVAPC 153
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 35.0 bits (79), Expect = 0.025
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 19 AAQERRVPRAAEVPGAQGQQ-GPRGREEAP-RGVRMAVP-----------LLRRMEGAPA 65
AA+ R PR ++ GA+GQ G GRE A R +M +P LR AP
Sbjct: 85 AAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPG 144
Query: 66 GPGGRTAAC 74
PGGR A C
Sbjct: 145 VPGGRVAPC 153
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 33.5 bits (75), Expect = 0.074
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 21/95 (22%)
Query: 13 AQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGRTA 72
A G M A+ R P A G+QG+ G R R+EAP G+ + PA P G +
Sbjct: 442 ATGVMPEARCRGTPEAPP-RGSQGRLGVRTRDEAPSGLSL----------PPAEPAGHSG 490
Query: 73 ACFSCILFCSVLGGSGGEVGAVRRRQQGQEVGGRA 107
LG G A + ++G EV G A
Sbjct: 491 Q----------LGDLEGARAAAGQEREGAEVRGGA 515
>gi|239582763 ral guanine nucleotide dissociation stimulator-like 3
isoform 2 [Homo sapiens]
Length = 710
Score = 33.1 bits (74), Expect = 0.097
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 8 LAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGP 67
LA L AQ + Q R+ R E P A PR R R++ L R +P+G
Sbjct: 481 LAALHAQNQLTEEQSYRLSRVIEPPAASCPSSPRIRRRISLTKRLSAKLAREKSSSPSGS 540
Query: 68 GG 69
G
Sbjct: 541 PG 542
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 32.0 bits (71), Expect = 0.22
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 21 QERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILF 80
Q+R + AA AQG + +GR P P R GA R AA
Sbjct: 899 QQRHLAPAAAAAAAQGVRAAQGRAHRPGA--QGAPSHRHRPGARGRRSRRRAA------- 949
Query: 81 CSVLGGSGGEVGAV-RRRQQGQEVGGRARSRLTAADHRQLQLSISS 125
++ GG+ A+ RRR GQ VG RA + A + Q+ +++
Sbjct: 950 VALAGGAHPARAALGRRRGGGQAVGARAAHQARLAGGQVDQVVVAA 995
Score = 28.1 bits (61), Expect = 3.1
Identities = 32/121 (26%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 7 ALAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPR-------GVRMAVPLLRR 59
A A AQG A P A P + + G RGR R G A L R
Sbjct: 906 AAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGR 965
Query: 60 MEGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQEVGGRARSRLTAADHRQL 119
G G R A + GG +V R V GR RL +L
Sbjct: 966 RRGGGQAVGARAAH------QARLAGGQVDQVVVAARAGDADGVRGRRPRRLALTARPEL 1019
Query: 120 Q 120
+
Sbjct: 1020 E 1020
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 32.0 bits (71), Expect = 0.22
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 21 QERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILF 80
Q+R + AA AQG + +GR P P R GA R AA
Sbjct: 899 QQRHLAPAAAAAAAQGVRAAQGRAHRPGA--QGAPSHRHRPGARGRRSRRRAA------- 949
Query: 81 CSVLGGSGGEVGAV-RRRQQGQEVGGRARSRLTAADHRQLQLSISS 125
++ GG+ A+ RRR GQ VG RA + A + Q+ +++
Sbjct: 950 VALAGGAHPARAALGRRRGGGQAVGARAAHQARLAGGQVDQVVVAA 995
Score = 28.1 bits (61), Expect = 3.1
Identities = 32/121 (26%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 7 ALAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPR-------GVRMAVPLLRR 59
A A AQG A P A P + + G RGR R G A L R
Sbjct: 906 AAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGR 965
Query: 60 MEGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQEVGGRARSRLTAADHRQL 119
G G R A + GG +V R V GR RL +L
Sbjct: 966 RRGGGQAVGARAAH------QARLAGGQVDQVVVAARAGDADGVRGRRPRRLALTARPEL 1019
Query: 120 Q 120
+
Sbjct: 1020 E 1020
>gi|112382377 ubiquitin-conjugating enzyme E2S [Homo sapiens]
Length = 222
Score = 32.0 bits (71), Expect = 0.22
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 5 QEALAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAP 64
+EA L+ AA+ R + E+ G G GP GR EA R + GAP
Sbjct: 131 EEAGRLLLENYEEYAARARLL---TEIHGGAG--GPSGRAEAGRALASGTEASSTDPGAP 185
Query: 65 AGPGG 69
GPGG
Sbjct: 186 GGPGG 190
>gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 31.6 bits (70), Expect = 0.28
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 42 GREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQ 101
GR P GVR LLR A G G T + + S G GG+ GA RR+
Sbjct: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQ--AARRWASGPSGGGGDAGATERRRD-T 61
Query: 102 EVGGRARSR 110
G R R R
Sbjct: 62 RCGLRPRCR 70
>gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 31.6 bits (70), Expect = 0.28
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 42 GREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQ 101
GR P GVR LLR A G G T + + S G GG+ GA RR+
Sbjct: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQ--AARRWASGPSGGGGDAGATERRRD-T 61
Query: 102 EVGGRARSR 110
G R R R
Sbjct: 62 RCGLRPRCR 70
>gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo
sapiens]
Length = 303
Score = 31.6 bits (70), Expect = 0.28
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 42 GREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQ 101
GR P GVR LLR A G G T + + S G GG+ GA RR+
Sbjct: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQ--AARRWASGPSGGGGDAGATERRRD-T 61
Query: 102 EVGGRARSR 110
G R R R
Sbjct: 62 RCGLRPRCR 70
>gi|56676337 transmembrane protein 28 [Homo sapiens]
Length = 472
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 11 LMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGR 70
L+A L A R PRA E+ A GRE P R +PL G P+ P G
Sbjct: 56 LLADHLWLCAGAR--PRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGT 113
Query: 71 TAACFSCILFCSVLGGSGGEVGAV 94
+S + + GS G V
Sbjct: 114 CGPRYSNLTKAAPAAGSRPVCGGV 137
>gi|145699105 connexin40.1 [Homo sapiens]
Length = 370
Score = 31.6 bits (70), Expect = 0.28
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 2 LMAQEALAFLMAQGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRME 61
L A AL+FL+ ++ + RR+ R P + + G G R R E
Sbjct: 201 LWAVSALSFLLGLADLVCSLRRRMRRRPGPPTSPSIRKQSGASGHAEGRRTDEEGGREEE 260
Query: 62 GAPAGPGGR 70
GAPA PG R
Sbjct: 261 GAPAPPGAR 269
>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
sapiens]
Length = 328
Score = 31.2 bits (69), Expect = 0.37
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 22 ERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCIL-- 79
+RR A+E G + QG G++ R+ LRR P GP G AA S +
Sbjct: 235 KRRENGASERAGERRGQGEEGQQ------RLRRLRLRR----PRGPPGGAAAAASVMAPR 284
Query: 80 ----FC-SVLGGSGGEVGAVRRRQQGQEVGGRARSRLTAAD 115
FC S+ GG G R G + GR + L AA+
Sbjct: 285 RSRCFCTSICGGRGARPQLPRTCGDGTQHCGRGKPALAAAE 325
>gi|19923629 Fc receptor-like 2 precursor [Homo sapiens]
Length = 508
Score = 31.2 bits (69), Expect = 0.37
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 67 PGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQEVGGRARSRLTA 113
PGG+ IL CSV GG+G + R G +G + + L+A
Sbjct: 212 PGGQVTEGQKLILLCSVAGGTGNVTFSWYREATGTSMGKKTQRSLSA 258
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 30.8 bits (68), Expect = 0.48
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 22 ERRVPRAAEVPGAQGQQGPRG--REEAPRGVRMAVPLLRRMEGAPAGPG 68
E+ +P AA GA+G GP+G ++ P G+R P R + GA PG
Sbjct: 1007 EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR-GFPGERGLPGAQGAPG 1054
Score = 26.9 bits (58), Expect = 6.9
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 32 PGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGG 69
PG +G QGP GR+ GV+ V L PAGP G
Sbjct: 1104 PGEKGPQGPAGRD----GVQGPVGL-----PGPAGPAG 1132
Score = 26.6 bits (57), Expect = 9.1
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 12/39 (30%)
Query: 32 PGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGR 70
PG QG GP G + AP E P GP GR
Sbjct: 1089 PGPQGPPGPAGEKGAPG------------EKGPQGPAGR 1115
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 30.8 bits (68), Expect = 0.48
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 22 ERRVPRAAEVPGAQGQQGPRG--REEAPRGVRMAVPLLRRMEGAPAGPG 68
E+ +P AA GA+G GP+G ++ P G+R P R + GA PG
Sbjct: 956 EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR-GFPGERGLPGAQGAPG 1003
Score = 26.9 bits (58), Expect = 6.9
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 32 PGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGG 69
PG +G QGP GR+ GV+ V L PAGP G
Sbjct: 1053 PGEKGPQGPAGRD----GVQGPVGL-----PGPAGPAG 1081
Score = 26.6 bits (57), Expect = 9.1
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 12/39 (30%)
Query: 32 PGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGR 70
PG QG GP G + AP E P GP GR
Sbjct: 1038 PGPQGPPGPAGEKGAPG------------EKGPQGPAGR 1064
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 30.8 bits (68), Expect = 0.48
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 22 ERRVPRAAEVPGAQGQQGPRG--REEAPRGVRMAVPLLRRMEGAPAGPG 68
E+ +P AA GA+G GP+G ++ P G+R P R + GA PG
Sbjct: 995 EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR-GFPGERGLPGAQGAPG 1042
Score = 26.9 bits (58), Expect = 6.9
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 32 PGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGG 69
PG +G QGP GR+ GV+ V L PAGP G
Sbjct: 1092 PGEKGPQGPAGRD----GVQGPVGL-----PGPAGPAG 1120
Score = 26.6 bits (57), Expect = 9.1
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 12/39 (30%)
Query: 32 PGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGR 70
PG QG GP G + AP E P GP GR
Sbjct: 1077 PGPQGPPGPAGEKGAPG------------EKGPQGPAGR 1103
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.8 bits (68), Expect = 0.48
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 20 AQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPG 68
A ER P A G +G G GR+ P G P +R M G+P GPG
Sbjct: 506 AGERGAPGPA---GPRGAAGEPGRDGVPGG-----PGMRGMPGSPGGPG 546
Score = 28.9 bits (63), Expect = 1.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 32 PGAQGQQGPRGREEAPRGV--RMAVPLLRRMEGAPAGPGGRTAACFSC 77
P QG QGP+G + P G+ R P + G+P P G C SC
Sbjct: 99 PNGQGPQGPKG-DPGPPGIPGRNGDPGIPGQPGSPGSP-GPPGICESC 144
Score = 27.3 bits (59), Expect = 5.3
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 14 QGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPG 68
+G AA P AA PG QG G RG + P + +G P GPG
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGMPGERG--------GLGSPGPKGDKGEPGGPG 750
Score = 26.6 bits (57), Expect = 9.1
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 26 PRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGRTAA 73
P AA PGA+G GP G P P + P GP G T A
Sbjct: 869 PGAAGFPGARGLPGPPGSNGNP---GPPGPSGSPGKDGPPGPAGNTGA 913
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 30.4 bits (67), Expect = 0.63
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 16/64 (25%)
Query: 12 MAQGAMLAAQERRVPRAAEVPGAQGQQGPRGR-----EEAPRGVRMAVPLLRRMEGAPAG 66
+ G M R P AA PG QG QGP G + P G R PAG
Sbjct: 88 LGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGAR-----------GPAG 136
Query: 67 PGGR 70
P G+
Sbjct: 137 PPGK 140
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 30.4 bits (67), Expect = 0.63
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 32 PGAQGQQGPRGREEAPRGV--RMAVPLLRRMEGAPAGPGGR 70
PG QG+QGP+G E+ P G+ +P ++ +G+P G R
Sbjct: 399 PGPQGRQGPKG-EQGPPGIPGPQGLPGVKGDKGSPGKTGPR 438
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 30.0 bits (66), Expect = 0.82
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 16/62 (25%)
Query: 13 AQGAMLAAQERRVPRAAEVPGAQGQQGPRG-----REEAPRGVRMAVPLLRRMEGAPAGP 67
A G + ER P PGAQG QGPRG + P+G PAGP
Sbjct: 691 APGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA-----------SGPAGP 739
Query: 68 GG 69
G
Sbjct: 740 PG 741
Score = 27.3 bits (59), Expect = 5.3
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 26 PRAAEVPGAQGQQGPRGRE--EAPRGVRMAVPLLRRMEGAPAGPGGR 70
P A PG QG G RG P+G R V + EGAP GGR
Sbjct: 740 PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVG-EKGPEGAPGKDGGR 785
Score = 27.3 bits (59), Expect = 5.3
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 23/81 (28%)
Query: 14 QGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGRTAA 73
QGA A+ +R P PG G G GRE +P GA GP GR A
Sbjct: 1007 QGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP--------------GAD-GPPGRDGA 1051
Query: 74 CFSCILFCSVLGGSGGEVGAV 94
+ + G GE GAV
Sbjct: 1052 --------AGVKGDRGETGAV 1064
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 30.0 bits (66), Expect = 0.82
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 16/62 (25%)
Query: 13 AQGAMLAAQERRVPRAAEVPGAQGQQGPRG-----REEAPRGVRMAVPLLRRMEGAPAGP 67
A G + ER P PGAQG QGPRG + P+G PAGP
Sbjct: 622 APGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA-----------SGPAGP 670
Query: 68 GG 69
G
Sbjct: 671 PG 672
Score = 27.3 bits (59), Expect = 5.3
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 26 PRAAEVPGAQGQQGPRGRE--EAPRGVRMAVPLLRRMEGAPAGPGGR 70
P A PG QG G RG P+G R V + EGAP GGR
Sbjct: 671 PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVG-EKGPEGAPGKDGGR 716
Score = 27.3 bits (59), Expect = 5.3
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 23/81 (28%)
Query: 14 QGAMLAAQERRVPRAAEVPGAQGQQGPRGREEAPRGVRMAVPLLRRMEGAPAGPGGRTAA 73
QGA A+ +R P PG G G GRE +P GA GP GR A
Sbjct: 938 QGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP--------------GAD-GPPGRDGA 982
Query: 74 CFSCILFCSVLGGSGGEVGAV 94
+ + G GE GAV
Sbjct: 983 --------AGVKGDRGETGAV 995
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 30.0 bits (66), Expect = 0.82
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 28 AAEVPGAQGQQ-GPRGREEAPRGVRM-AVPLLRRMEGAPAGPG 68
AA+ PGAQG++ GPRG A RG+++ V R E APA G
Sbjct: 399 AAKTPGAQGERLGPRGTRRA-RGLQLRPVGGQSRREAAPACSG 440
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 30.0 bits (66), Expect = 0.82
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 35 QGQQGP---RGREEAPRGVRMAVPLLRRMEGAPAGP 67
+ Q+GP RG PRG + VP RR AP GP
Sbjct: 68 RAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGP 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,345,570
Number of Sequences: 37866
Number of extensions: 327147
Number of successful extensions: 2979
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 2250
Number of HSP's gapped (non-prelim): 845
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.