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Search of human proteins with 239757849
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757849 PREDICTED: hypothetical protein [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757849 PREDICTED: hypothetical protein [Homo sapiens] 377 e-105
gi|239752365 PREDICTED: hypothetical protein XP_002348214 [Homo ... 377 e-105
gi|239746879 PREDICTED: hypothetical protein XP_002343873 [Homo ... 377 e-105
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa... 31 0.68
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa... 31 0.68
gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 30 1.2
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 29 2.0
gi|4501951 adenosine A2b receptor [Homo sapiens] 29 2.0
gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens] 29 2.6
gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens] 29 2.6
gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens] 29 2.6
gi|169184020 PREDICTED: hypothetical protein [Homo sapiens] 28 4.4
gi|169179745 PREDICTED: hypothetical protein [Homo sapiens] 28 4.4
gi|169180144 PREDICTED: hypothetical protein [Homo sapiens] 28 4.4
gi|90403581 meiosis defective 1 [Homo sapiens] 28 4.4
gi|195546915 hypothetical protein LOC125704 [Homo sapiens] 28 5.7
gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens] 28 5.7
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 28 5.7
gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens] 27 7.5
gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens] 27 7.5
gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo sap... 27 7.5
gi|126116565 MYC binding protein 2 [Homo sapiens] 27 7.5
gi|122937384 transmembrane protein 218 [Homo sapiens] 27 7.5
gi|149944593 hypothetical protein LOC23349 [Homo sapiens] 27 7.5
gi|42734375 ankyrin repeat and sterile alpha motif domain contai... 27 7.5
gi|4885065 amyloid precursor-like protein 1 isoform 2 precursor ... 27 9.8
gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor... 27 9.8
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 27 9.8
gi|8923582 zinc finger protein 446 [Homo sapiens] 27 9.8
>gi|239757849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 377 bits (968), Expect = e-105
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL
Sbjct: 1 MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
Query: 61 RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI
Sbjct: 61 RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
Query: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM
Sbjct: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
Query: 181 KSQ 183
KSQ
Sbjct: 181 KSQ 183
>gi|239752365 PREDICTED: hypothetical protein XP_002348214 [Homo
sapiens]
Length = 183
Score = 377 bits (968), Expect = e-105
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL
Sbjct: 1 MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
Query: 61 RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI
Sbjct: 61 RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
Query: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM
Sbjct: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
Query: 181 KSQ 183
KSQ
Sbjct: 181 KSQ 183
>gi|239746879 PREDICTED: hypothetical protein XP_002343873 [Homo
sapiens]
Length = 183
Score = 377 bits (968), Expect = e-105
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL
Sbjct: 1 MWLSGCVGTRARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLL 60
Query: 61 RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI
Sbjct: 61 RLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELI 120
Query: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM
Sbjct: 121 HSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQKTCCYSRLAM 180
Query: 181 KSQ 183
KSQ
Sbjct: 181 KSQ 183
>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
sapiens]
Length = 1782
Score = 30.8 bits (68), Expect = 0.68
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 72 GSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSS- 130
G +G +G + R PW + + KR +PS S+ + + + + SA S+ S
Sbjct: 590 GEAEEGATSDGEKKREGVTPWASFKKMVTPKKRVRRPSESDKEDELDKVKSATLSSTEST 649
Query: 131 ------------QEPREEWPRARAQENV 146
+EP+ E P+ + +V
Sbjct: 650 ASEMQEEMKGSVEEPKPEEPKRKVDTSV 677
>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
sapiens]
Length = 1684
Score = 30.8 bits (68), Expect = 0.68
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 72 GSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSS- 130
G +G +G + R PW + + KR +PS S+ + + + + SA S+ S
Sbjct: 492 GEAEEGATSDGEKKREGVTPWASFKKMVTPKKRVRRPSESDKEDELDKVKSATLSSTEST 551
Query: 131 ------------QEPREEWPRARAQENV 146
+EP+ E P+ + +V
Sbjct: 552 ASEMQEEMKGSVEEPKPEEPKRKVDTSV 579
>gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transferase
3 [Homo sapiens]
Length = 998
Score = 30.0 bits (66), Expect = 1.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 80 GEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSE 118
G+ RP+A W G+E V + GQ G E + E
Sbjct: 575 GDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEE 613
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 29.3 bits (64), Expect = 2.0
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 72 GSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRP--GQPSGSEVKSQSELIHSANACSSS 129
G H+G G +P ++ WRGQ+A K+P +G E + + +A A + S
Sbjct: 274 GEKHRG--GGDKKPLRKNSRWRGQKAAAAGGKKPQKAAAAGGERRKKLRRQKAAVARAKS 331
Query: 130 SQEPR 134
++PR
Sbjct: 332 PKKPR 336
>gi|4501951 adenosine A2b receptor [Homo sapiens]
Length = 332
Score = 29.3 bits (64), Expect = 2.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 59 LLRLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCV 102
++ + WVL F +P G++ + + + PW G CC+
Sbjct: 125 VIAVLWVLAFGIGLTPFLGWNSKDSATNNCTEPWDGTTNESCCL 168
>gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens]
Length = 216
Score = 28.9 bits (63), Expect = 2.6
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 85 PRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREEWPRARAQE 144
P PW Q PGQP S Q + ++C + PR+ W A+A
Sbjct: 123 PDTLQQPWDPQ--------MPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKA-- 172
Query: 145 NVVFWPSAVGEALATSGVGLQQLLPQ 170
V W SA + S L++ PQ
Sbjct: 173 -VAPWGSAGASEVHPS---LERATPQ 194
>gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens]
Length = 215
Score = 28.9 bits (63), Expect = 2.6
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 85 PRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREEWPRARAQE 144
P PW Q PGQP S Q + ++C + PR+ W A+A
Sbjct: 122 PDTLQQPWDPQ--------MPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKA-- 171
Query: 145 NVVFWPSAVGEALATSGVGLQQLLPQ 170
V W SA + S L++ PQ
Sbjct: 172 -VAPWGSAGASEVHPS---LERATPQ 193
>gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens]
Length = 457
Score = 28.9 bits (63), Expect = 2.6
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 117 SELIHSANACSSSSQEPREEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQK 171
++++H+A+ SSSS E P +E VV W + + ++ +G +++ P K
Sbjct: 333 TDMVHAASDPSSSSGRLSEPDPSHTLEERVVHWYFKLLDKNSSGDIGKKEIKPFK 387
>gi|169184020 PREDICTED: hypothetical protein [Homo sapiens]
Length = 132
Score = 28.1 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 83 TRPRA-QSHPWRGQEAVCCCVKRPGQPSGSEVKSQ 116
+RP A QS P+ VCC +PG+P+ S ++ +
Sbjct: 77 SRPTALQSPPYSSSPQVCCGSTKPGRPTRSCIQQE 111
>gi|169179745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 132
Score = 28.1 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 83 TRPRA-QSHPWRGQEAVCCCVKRPGQPSGSEVKSQ 116
+RP A QS P+ VCC +PG+P+ S ++ +
Sbjct: 77 SRPTALQSPPYSSSPQVCCGSTKPGRPTRSCIQQE 111
>gi|169180144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 132
Score = 28.1 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 83 TRPRA-QSHPWRGQEAVCCCVKRPGQPSGSEVKSQ 116
+RP A QS P+ VCC +PG+P+ S ++ +
Sbjct: 77 SRPTALQSPPYSSSPQVCCGSTKPGRPTRSCIQQE 111
>gi|90403581 meiosis defective 1 [Homo sapiens]
Length = 1274
Score = 28.1 bits (61), Expect = 4.4
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 11 ARRRDAEPVSSGNGLRAMAVLTKRLALPCSAAPSLLLFLSALFLPQLRLLRLYWVLEFSF 70
+++R A + S GL M +L K LAL + A S P+ LL W+L SF
Sbjct: 972 SQKRAAAVLLSSTGL--MELLEKMLALTLAKADS----------PRTALLCSAWLLTASF 1019
Query: 71 AGSPHQG 77
+ H+G
Sbjct: 1020 SAQQHKG 1026
>gi|195546915 hypothetical protein LOC125704 [Homo sapiens]
Length = 419
Score = 27.7 bits (60), Expect = 5.7
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 44 SLLLFLSALFLPQLRLLRLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVK 103
SLL LS LP L ++ +EF AGSPH A+ +
Sbjct: 200 SLLQDLSPHVLPVLGSCGHFYAVEFLAAGSPH-------------------HRALFPLDR 240
Query: 104 RPGQPSGSEVKSQSEL 119
PG P G + K+ S++
Sbjct: 241 APGAPGGGQAKAISDI 256
>gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens]
Length = 453
Score = 27.7 bits (60), Expect = 5.7
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 82 GTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREEWPRAR 141
G R A S P G C R G +G +S+ A S S++ P WP R
Sbjct: 134 GNRTLAPSLPCPGGRGGGCHPTRSGSRAGGRASGKSK----GKARSKSTRAPATTWPVRR 189
Query: 142 AQENVVFWPSAVGEALATSGVGLQQLL 168
+ N +P + + L S LQ++L
Sbjct: 190 GKFN---FPYKIDDIL--SAPDLQKVL 211
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 18/64 (28%)
Query: 80 GEGTRPRAQSHPWRG---------QEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSS 130
GEG PR Q P R ++ + C K PG+P ++ S + S
Sbjct: 162 GEGEPPRGQLQPSRPTRARGTCSVEDPLLVCQKEPGKP---------RMVKSVGSVGDSP 212
Query: 131 QEPR 134
+EPR
Sbjct: 213 REPR 216
>gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 27.3 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 81 EGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSE 112
E RPR + PW+ Q + C ++RP + G +
Sbjct: 128 ELARPRPPTSPWKAQAS--CALQRPSRAQGQD 157
>gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 27.3 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 81 EGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSE 112
E RPR + PW+ Q + C ++RP + G +
Sbjct: 128 ELARPRPPTSPWKAQAS--CALQRPSRAQGQD 157
>gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
sapiens]
Length = 226
Score = 27.3 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 81 EGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSE 112
E RPR + PW+ Q + C ++RP + G +
Sbjct: 128 ELARPRPPTSPWKAQAS--CALQRPSRAQGQD 157
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 27.3 bits (59), Expect = 7.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 70 FAGSPHQGFHGEGTRPRAQSHPWRGQEAV 98
F GS +G GE T+ R QS P++ ++ +
Sbjct: 567 FTGSASKGEDGESTKSRRQSKPYKPKKII 595
>gi|122937384 transmembrane protein 218 [Homo sapiens]
Length = 115
Score = 27.3 bits (59), Expect = 7.5
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 45 LLLFLSALFLPQLRLLRLYWVLEFSFAGSPH 75
LL FLSA+FL L L+ +++VLE +A H
Sbjct: 83 LLAFLSAIFLGGLFLVLIHYVLEPIYAKPLH 113
>gi|149944593 hypothetical protein LOC23349 [Homo sapiens]
Length = 400
Score = 27.3 bits (59), Expect = 7.5
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 7/117 (5%)
Query: 43 PSLLLFLSALFLPQLR----LLRLYWVLEFSFAGSPHQGFHGEGTRPRAQSHPWRGQEAV 98
P L S L L QLR LLRL V E A + F G+ R +
Sbjct: 266 PDFLSHESLLLLQQLRPQNSLLRLLTVKERERARA---AFLARGSGSTVSEAECRRAQHS 322
Query: 99 CCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREEWPRARAQENVVFWPSAVGE 155
C + P PS S S I ++ SSSS+ + + V WP+ + E
Sbjct: 323 WFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKTLLPTEQESRFVDWPTFLQE 379
>gi|42734375 ankyrin repeat and sterile alpha motif domain
containing 3 [Homo sapiens]
Length = 656
Score = 27.3 bits (59), Expect = 7.5
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 77 GFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREE 136
G G RPR + P RG + P + G + + I+ + SSSS REE
Sbjct: 279 GLGGRAPRPRYEQAPPRGYVTFNSSGENPLEEEGLCCRDVTSPINERDVESSSSSSSREE 338
>gi|4885065 amyloid precursor-like protein 1 isoform 2 precursor
[Homo sapiens]
Length = 650
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 79 HGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREE 136
HG G S +RG E VCC PSG+ V S + +++ EE
Sbjct: 189 HGSGMLLPCGSDRFRGVEYVCCPPPGTPDPSGTAVGDPSTRSWPPGSRVEGAEDEEEE 246
>gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor
[Homo sapiens]
Length = 651
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 79 HGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQSELIHSANACSSSSQEPREE 136
HG G S +RG E VCC PSG+ V S + +++ EE
Sbjct: 189 HGSGMLLPCGSDRFRGVEYVCCPPPGTPDPSGTAVGDPSTRSWPPGSRVEGAEDEEEE 246
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 26.9 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 104 RPGQPSGSEVKSQSELIHSANACSSSSQEP 133
+P Q S + SQ L+H A++ +S SQ P
Sbjct: 414 QPSQTSVGQAASQGNLLHLAHSQASMSQSP 443
>gi|8923582 zinc finger protein 446 [Homo sapiens]
Length = 450
Score = 26.9 bits (58), Expect = 9.8
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 72 GSPHQGFHGEGTRPRAQSHPWRGQEAVCCCVKRPGQPSGSEVKSQS--------ELIHSA 123
GSPH E Q G + C VK G EV S E H
Sbjct: 136 GSPHPSGTVESPGEGPQDTRIEGSVQLSCSVKEEPNVDGQEVAPSSPPLAAQSPEGNHGH 195
Query: 124 NACSSSSQEP---REEWPRARAQENVVFWPSAVGEALATSGVGLQQLLPQ 170
+S+S P +EEW + ++W + + + +GL P+
Sbjct: 196 QEPASTSFHPPRIQEEWGLLDRSQKELYWDAMLEKYGTVVSLGLPPHQPE 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,437,333
Number of Sequences: 37866
Number of extensions: 347169
Number of successful extensions: 1054
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 31
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.