Guide to the Human Genome
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Name: LOC100289482 Sequence: fasta or formatted (183aa) NCBI GI: 239746879
Description:

PREDICTED: hypothetical protein XP_002343873

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         19           2
 C cysteine            4.4          8           3
 D aspartate           0.5          1           1
 E glutamate           6.0         11           2
 F phenylalanine       3.3          6           1
 G glycine             7.7         14           1
 H histidine           2.2          4           1
 I isoleucine          0.5          1           1
 K lysine              2.7          5           1
 L leucine            12.0         22           3
 M methionine          1.6          3           1
 N asparagine          1.6          3           1
 P proline             7.1         13           1
 Q glutamine           6.6         12           2
 R arginine            8.7         16           3
 S serine             12.0         22           4
 T threonine           2.7          5           1
 V valine              6.0         11           2
 W tryptophan          2.7          5           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343873 
LOC100292310          1.000   PREDICTED: hypothetical protein 
LOC100290746          1.000   PREDICTED: hypothetical protein XP_002348214 
AKAP12                0.017   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.017   A kinase (PRKA) anchor protein 12 isoform 2 
B4GALNT3              0.014   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
LOC100293129          0.011   PREDICTED: hypothetical protein 
ADORA2B               0.011   adenosine A2b receptor 
SEBOX                 0.011   SEBOX homeobox isoform 1 
SEBOX                 0.011   SEBOX homeobox isoform 2 
SMOC2                 0.011   SPARC related modular calcium binding 2 
LOC100131630          0.009   PREDICTED: hypothetical protein 
LOC100131630          0.009   PREDICTED: hypothetical protein 
LOC100131630          0.009   PREDICTED: hypothetical protein 
MEI1                  0.009   meiosis defective 1 
C18orf51              0.009   hypothetical protein LOC125704 
ARMCX1                0.009   armadillo repeat containing, X-linked 1 
ZC3H3                 0.009   zinc finger CCCH-type containing 3 
LOC645960             0.006   PREDICTED: similar to hCG1644362 
LOC645960             0.006   PREDICTED: similar to hCG1644362 
LOC645960             0.006   PREDICTED: hypothetical protein LOC645960 
MYCBP2                0.006   MYC binding protein 2 
TMEM218               0.006   transmembrane protein 218 
KIAA1045              0.006   hypothetical protein LOC23349 
ANKS3                 0.006   ankyrin repeat and sterile alpha motif domain contai...
APLP1                 0.006   amyloid precursor-like protein 1 isoform 2 precursor ...
APLP1                 0.006   amyloid precursor-like protein 1 isoform 1 precursor...
POU6F2                0.006   POU domain, class 6, transcription factor 2 
ZNF446                0.006   zinc finger protein 446 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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