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Search of human proteins with 239757745
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
(334 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 681 0.0
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 681 0.0
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 679 0.0
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 193 2e-49
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 193 2e-49
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 134 1e-31
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 134 1e-31
gi|11024714 ubiquitin B precursor [Homo sapiens] 134 1e-31
gi|67191208 ubiquitin C [Homo sapiens] 134 1e-31
gi|5453760 neural precursor cell expressed, developmentally down... 81 1e-15
gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens] 56 4e-08
gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens] 56 4e-08
gi|7657667 ubiquitin-like 4 [Homo sapiens] 56 5e-08
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 55 9e-08
gi|169790971 parkin isoform 2 [Homo sapiens] 50 3e-06
gi|169790969 parkin isoform 1 [Homo sapiens] 50 3e-06
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 49 6e-06
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 48 1e-05
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 47 2e-05
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 47 2e-05
gi|13376439 ubiquitin domain containing 1 [Homo sapiens] 46 4e-05
gi|8567418 ubiquilin 3 [Homo sapiens] 45 1e-04
gi|222352096 ubiquitin D [Homo sapiens] 44 2e-04
gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo... 44 3e-04
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 43 3e-04
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 43 5e-04
gi|44662819 ubiquitin-like 4B [Homo sapiens] 43 5e-04
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 42 8e-04
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 42 8e-04
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 42 8e-04
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 681 bits (1758), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV 60
MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV
Sbjct: 1 MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV 60
Query: 61 PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED 120
PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 61 PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED 120
Query: 121 GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK 180
GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK
Sbjct: 121 GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK 180
Query: 181 ISALLTNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN 240
ISALLTNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN
Sbjct: 181 ISALLTNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN 240
Query: 241 NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP 300
NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP
Sbjct: 241 NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP 300
Query: 301 LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV 334
LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV
Sbjct: 301 LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV 334
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 681 bits (1758), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV 60
MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV
Sbjct: 1 MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV 60
Query: 61 PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED 120
PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 61 PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED 120
Query: 121 GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK 180
GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK
Sbjct: 121 GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK 180
Query: 181 ISALLTNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN 240
ISALLTNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN
Sbjct: 181 ISALLTNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN 240
Query: 241 NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP 300
NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP
Sbjct: 241 NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP 300
Query: 301 LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV 334
LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV
Sbjct: 301 LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV 334
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 679 bits (1751), Expect = 0.0
Identities = 333/334 (99%), Positives = 333/334 (99%)
Query: 1 MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV 60
MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV
Sbjct: 1 MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGSNCKRLCFEGSQRFCDWRGSPV 60
Query: 61 PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED 120
PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 61 PQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLED 120
Query: 121 GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK 180
GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK
Sbjct: 121 GRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDK 180
Query: 181 ISALLTNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN 240
ISAL TNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN
Sbjct: 181 ISALPTNVELECFWKRLDEPVIRMGCVYSSSKRHMIVFISGILVKFMENANYGIEGMQVN 240
Query: 241 NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP 300
NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP
Sbjct: 241 NVSKAVNKSTRKKNPSFKREANGMCSCYCLTGFPDLNVTALSGVHESRSLLIHHWLKLQP 300
Query: 301 LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV 334
LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV
Sbjct: 301 LPVMDTTALLPLRSALTGPEPMLRISSPAGGIRV 334
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 193 bits (491), Expect = 2e-49
Identities = 103/117 (88%), Positives = 105/117 (89%), Gaps = 1/117 (0%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 129 IQKEPTLHLLLRLCGVAKKR-KKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISAL 184
IQKE TLHL+LRL G AKKR KKSY TPKKNKHKRKKVKL VLK YKVDEN KIS L
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL 117
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 193 bits (491), Expect = 2e-49
Identities = 103/117 (88%), Positives = 105/117 (89%), Gaps = 1/117 (0%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 129 IQKEPTLHLLLRLCGVAKKR-KKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISAL 184
IQKE TLHL+LRL G AKKR KKSY TPKKNKHKRKKVKL VLK YKVDEN KIS L
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL 117
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 134 bits (337), Expect = 1e-31
Identities = 74/105 (70%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 129 IQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCY 173
IQKE TLHL+LRL G + P+ ++ K K+ KCY
Sbjct: 61 IQKESTLHLVLRLRGGIIE-----PSLRQLAQKYNCDKMICRKCY 100
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 134 bits (337), Expect = 1e-31
Identities = 74/105 (70%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 129 IQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCY 173
IQKE TLHL+LRL G + P+ ++ K K+ KCY
Sbjct: 61 IQKESTLHLVLRLRGGIIE-----PSLRQLAQKYNCDKMICRKCY 100
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 61 IQKESTLHLVLRLRG 75
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 137 IQKESTLHLVLRLRG 151
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 213 IQKESTLHLVLRLRG 227
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 61 IQKESTLHLVLRLRG 75
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 137 IQKESTLHLVLRLRG 151
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 289 IQKESTLHLVLRLRG 303
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 365 IQKESTLHLVLRLRG 379
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 441 IQKESTLHLVLRLRG 455
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 517 IQKESTLHLVLRLRG 531
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 593 IQKESTLHLVLRLRG 607
Score = 134 bits (336), Expect = 1e-31
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 669 IQKESTLHLVLRLRG 683
Score = 130 bits (328), Expect = 1e-30
Identities = 67/75 (89%), Positives = 69/75 (92%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIP DQQRLIFAGKQLEDGRTLSD N
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 129 IQKEPTLHLLLRLCG 143
IQKE TLHL+LRL G
Sbjct: 213 IQKESTLHLVLRLRG 227
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 80.9 bits (198), Expect = 1e-15
Identities = 37/73 (50%), Positives = 53/73 (72%)
Query: 71 IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130
I VKTL GK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +D I
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 131 KEPTLHLLLRLCG 143
LHL+L L G
Sbjct: 63 GGSVLHLVLALRG 75
>gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 56.2 bits (134), Expect = 4e-08
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+++F++TL G L V P + + +VKAKI+ EGIP +Q LI+ +LE+ L+D N
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 129 IQKEPTLHLLLRLCG 143
I + TL L+L + G
Sbjct: 88 ISEGCTLKLVLAMRG 102
>gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 56.2 bits (134), Expect = 4e-08
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+++F++TL G L V P + + +VKAKI+ EGIP +Q LI+ +LE+ L+D N
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 129 IQKEPTLHLLLRLCG 143
I + TL L+L + G
Sbjct: 88 ISEGCTLKLVLAMRG 102
>gi|7657667 ubiquitin-like 4 [Homo sapiens]
Length = 157
Score = 55.8 bits (133), Expect = 5e-08
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+Q+ VK L+G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSD +
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
Query: 129 IQKEPTLHLLLR 140
I L+L+++
Sbjct: 61 IGPNSKLNLVVK 72
>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
precursor [Homo sapiens]
Length = 133
Score = 55.1 bits (131), Expect = 9e-08
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
+Q+FV+ + T EV + + +KA + EGI P+ Q ++ AG LED TL C
Sbjct: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
Query: 129 IQKEPTLHLLLRLCG------VAKKRKKSYPTPKKNKHKRKKVK 166
++ TL + R+ G +A+ K TPK K ++KK K
Sbjct: 59 VEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK 102
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 50.1 bits (118), Expect = 3e-06
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 71 IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130
+FV+ +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ +C++
Sbjct: 3 VFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLD 62
Query: 131 KEPTLHLLLR 140
++ +H++ R
Sbjct: 63 QQSIVHIVQR 72
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 50.1 bits (118), Expect = 3e-06
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 71 IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130
+FV+ +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ +C++
Sbjct: 3 VFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLD 62
Query: 131 KEPTLHLLLR 140
++ +H++ R
Sbjct: 63 QQSIVHIVQR 72
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 48.9 bits (115), Expect = 6e-06
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 60 VPQSAAATKLQIFVKTLRGK-TITLE-VEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQ 117
VP +A T + I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ
Sbjct: 6 VPPLSADT-MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQ 64
Query: 118 LEDGRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVK-LDVLKCYKVD 176
+EDG TL D ++ T+ LL+R +S P K + ++ D C
Sbjct: 65 MEDGHTLFDYEVRLNDTIQLLVR---------QSLVLPHSTKERDSELSDTDSGCCLGQS 115
Query: 177 ENDKIS 182
E+DK S
Sbjct: 116 ESDKSS 121
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 67 TKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 126
+++Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L
Sbjct: 432 SEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 491
Query: 127 CNIQKEPTLHL 137
IQ TL L
Sbjct: 492 YGIQDSDTLIL 502
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 47.4 bits (111), Expect = 2e-05
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 71 IFVKTLRGK-TITLE-VEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 3 IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 62
Query: 129 IQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVK-LDVLKCYKVDENDKIS 182
++ T+ LL+R +S P K + ++ D C E+DK S
Sbjct: 63 VRLNDTIQLLVR---------QSLVLPHSTKERDSELSDTDSGCCLGQSESDKSS 108
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 125
+Q+ +KTL+ +T ++++P + ++ +K KI+ ++G P Q+LI+AGK L D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 126 DCNIQKEPTLHLLLRLCGVAKKRKKSYPTP 155
+ I ++ + ++ V K + S P P
Sbjct: 61 EYKIDEKNFVVVM-----VTKPKAVSTPAP 85
>gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
Length = 227
Score = 46.2 bits (108), Expect = 4e-05
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 59 PVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQL 118
P P + + + V+ GK + L D + +K ++ +EGI P QR F+GK L
Sbjct: 139 PEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLL 198
Query: 119 EDGRTLSDCNIQKEPTLHLLL 139
D L + IQK+ + +++
Sbjct: 199 TDRTRLQETKIQKDFVIQVII 219
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 56 RGSPVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAG 115
+GSP P +++ VKT + K V + I+ +K +I + PDQ LIFAG
Sbjct: 10 QGSPAPVQDPHL-IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG 67
Query: 116 KQLEDGRTLSDCNIQKEPTLHLLLR 140
K L+D +L+ C ++ T+HL+++
Sbjct: 68 KILKDPDSLAQCGVRDGLTVHLVIK 92
>gi|222352096 ubiquitin D [Homo sapiens]
Length = 165
Score = 43.9 bits (102), Expect = 2e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 83 LEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQKEPTLHL 137
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++D I+K L L
Sbjct: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL 158
>gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo
sapiens]
Length = 234
Score = 43.5 bits (101), Expect = 3e-04
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 59 PVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQL 118
P P S +L++ + T GK + L V +D + ++K ++ EG+ P QR F+G+ L
Sbjct: 144 PPPNSGYECQLRLRLST--GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL 201
Query: 119 EDGRTLSDCNIQKEPTLHLLLRLCGVAKKRKKSYPTPKKN 158
D + I K+ + +++ + PTP +N
Sbjct: 202 TDKMKFEELKIPKDYVVQVIV-------SQPVQNPTPVEN 234
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 43.1 bits (100), Expect = 3e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
L I V+ +G++ T EV + + ++K ++ EG+ D L F GK LED L +
Sbjct: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
Query: 129 IQKEPTLHLLLRLCG 143
++ T+ + LRL G
Sbjct: 142 LKPLSTVFMNLRLRG 156
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [Homo
sapiens]
Length = 802
Score = 42.7 bits (99), Expect = 5e-04
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 71 IFVKTLRG-KTITLE-VEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
I V+T+ G KT T+E V IE ++ ++ + P+ QRL + GKQLE+G TL D +
Sbjct: 3 IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYD 62
Query: 129 IQKEPTLHLLLR 140
+ + LL+R
Sbjct: 63 VGLNDIIQLLVR 74
>gi|44662819 ubiquitin-like 4B [Homo sapiens]
Length = 174
Score = 42.7 bits (99), Expect = 5e-04
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 73 VKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQKE 132
VK L G+ +L+V +++ +K + + +P +QQ L+F G+ LED + LSD I
Sbjct: 5 VKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYCIGPN 64
Query: 133 PTLHLLLR 140
+++++++
Sbjct: 65 ASINVIMQ 72
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 42.0 bits (97), Expect = 8e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
L++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L + N
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 129 IQKEPTLHLLLR 140
+ + +HL+ R
Sbjct: 77 VGGK-VIHLVER 87
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 42.0 bits (97), Expect = 8e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
L++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L + N
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 129 IQKEPTLHLLLR 140
+ + +HL+ R
Sbjct: 77 VGGK-VIHLVER 87
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 42.0 bits (97), Expect = 8e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
L++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L + N
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 129 IQKEPTLHLLLR 140
+ + +HL+ R
Sbjct: 77 VGGK-VIHLVER 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,313,420
Number of Sequences: 37866
Number of extensions: 609892
Number of successful extensions: 1626
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1559
Number of HSP's gapped (non-prelim): 86
length of query: 334
length of database: 18,247,518
effective HSP length: 103
effective length of query: 231
effective length of database: 14,347,320
effective search space: 3314230920
effective search space used: 3314230920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.