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Search of human proteins with 239757732
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757732 PREDICTED: similar to KIAA1654 protein [Homo
sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757732 PREDICTED: similar to KIAA1654 protein [Homo sapiens] 219 5e-58
gi|219521907 carboxylesterase 7 isoform 1 [Homo sapiens] 33 0.049
gi|21450749 carboxylesterase 7 isoform 2 [Homo sapiens] 33 0.049
gi|4504211 guanylate cyclase 1, soluble, alpha 2 [Homo sapiens] 29 0.71
gi|19923122 cholinergic receptor, nicotinic, alpha 3 [Homo sapiens] 29 0.93
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 28 1.2
gi|231571329 nitric oxide synthase 3 isoform 3 [Homo sapiens] 28 1.2
gi|231571314 nitric oxide synthase 3 isoform 2 [Homo sapiens] 28 1.2
gi|40254422 nitric oxide synthase 3 isoform 1 [Homo sapiens] 28 1.2
gi|169215908 PREDICTED: family with sequence similarity 108, mem... 28 1.2
gi|169215726 PREDICTED: family with sequence similarity 108, mem... 28 1.2
gi|239746656 PREDICTED: hypothetical protein LOC729495 [Homo sap... 28 1.2
gi|66346723 mitochondrial phosphoenolpyruvate carboxykinase 2 is... 28 1.2
gi|190194360 protocadherin 20 [Homo sapiens] 28 1.2
gi|239754641 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo ... 28 1.6
gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo ... 28 1.6
gi|239508944 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 28 1.6
gi|118402590 myosin XV [Homo sapiens] 27 2.7
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 27 2.7
gi|157909822 pragmin [Homo sapiens] 27 2.7
gi|31542509 ADP-dependent glucokinase [Homo sapiens] 27 2.7
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 27 2.7
gi|239756961 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 27 4.6
gi|12669911 E2F transcription factor 1 [Homo sapiens] 26 6.0
>gi|239757732 PREDICTED: similar to KIAA1654 protein [Homo sapiens]
Length = 110
Score = 219 bits (557), Expect = 5e-58
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MTMTVARKSNGLVQSPALAAGLKAQICMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATP 60
MTMTVARKSNGLVQSPALAAGLKAQICMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATP
Sbjct: 1 MTMTVARKSNGLVQSPALAAGLKAQICMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATP 60
Query: 61 PAQGRPSPVSSYLAPALNALLVSSLQWSSLQPNLKVAASTLTLSLLCSAP 110
PAQGRPSPVSSYLAPALNALLVSSLQWSSLQPNLKVAASTLTLSLLCSAP
Sbjct: 61 PAQGRPSPVSSYLAPALNALLVSSLQWSSLQPNLKVAASTLTLSLLCSAP 110
>gi|219521907 carboxylesterase 7 isoform 1 [Homo sapiens]
Length = 575
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 25 QICMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQGRPSPVSSYL-----APALNA 79
QI + +W A P+ EGP + L W G P PV+ +L AP L +
Sbjct: 10 QILIWAIWVLAAPTKGPSAEGPQRNTRLGWIQGKQVTVLGSPVPVNVFLGVPFAAPPLGS 69
Query: 80 LLVSSLQWSSLQPNLKVAASTLTLSL 105
L ++ Q +S NL+ A S L L
Sbjct: 70 LRFTNPQPASPWDNLREATSYPNLCL 95
>gi|21450749 carboxylesterase 7 isoform 2 [Homo sapiens]
Length = 525
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 25 QICMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQGRPSPVSSYL-----APALNA 79
QI + +W A P+ EGP + L W G P PV+ +L AP L +
Sbjct: 10 QILIWAIWVLAAPTKGPSAEGPQRNTRLGWIQGKQVTVLGSPVPVNVFLGVPFAAPPLGS 69
Query: 80 LLVSSLQWSSLQPNLKVAASTLTLSL 105
L ++ Q +S NL+ A S L L
Sbjct: 70 LRFTNPQPASPWDNLREATSYPNLCL 95
>gi|4504211 guanylate cyclase 1, soluble, alpha 2 [Homo sapiens]
Length = 732
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 41 PAQEGPCSSDLLLWSLLATPPAQGRPSPVSSYLAPA 76
P +EG C L W+ +PP PSP ++ A A
Sbjct: 23 PEEEGECPLSRLCWNGSRSPPGPLEPSPAAAAAAAA 58
>gi|19923122 cholinergic receptor, nicotinic, alpha 3 [Homo sapiens]
Length = 505
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 1 MTMTVARKSNGLVQSPALAAGLKAQICMGKVWSQGAEGGEPAQEGPC 47
MT + + N P A L C + S+G + G P Q+G C
Sbjct: 356 MTRPTSNEGNAQKPRPLYGAELSNLNCFSRAESKGCKEGYPCQDGMC 402
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 43 QEGPCSSDLLLWSLLATPPAQGRPSP 68
Q+GPC+ L SL+ QGRPSP
Sbjct: 90 QDGPCTPRRCLGSLVFPRKLQGRPSP 115
>gi|231571329 nitric oxide synthase 3 isoform 3 [Homo sapiens]
Length = 614
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 43 QEGPCSSDLLLWSLLATPPAQGRPSP 68
Q+GPC+ L SL+ QGRPSP
Sbjct: 90 QDGPCTPRRCLGSLVFPRKLQGRPSP 115
>gi|231571314 nitric oxide synthase 3 isoform 2 [Homo sapiens]
Length = 596
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 43 QEGPCSSDLLLWSLLATPPAQGRPSP 68
Q+GPC+ L SL+ QGRPSP
Sbjct: 90 QDGPCTPRRCLGSLVFPRKLQGRPSP 115
>gi|40254422 nitric oxide synthase 3 isoform 1 [Homo sapiens]
Length = 1203
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 43 QEGPCSSDLLLWSLLATPPAQGRPSP 68
Q+GPC+ L SL+ QGRPSP
Sbjct: 90 QDGPCTPRRCLGSLVFPRKLQGRPSP 115
>gi|169215908 PREDICTED: family with sequence similarity 108, member
A5 [Homo sapiens]
Length = 403
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 35 GAEGGEPAQEGPCSSDLL---LWSLLATPPAQGRPSPVSSYLAPALNALLV 82
G GG PA+E P + L L L PP GR + ++L P LV
Sbjct: 83 GGPGGGPAREAPAMNGLSLSELCCLFCYPPCPGRIAAKLAFLPPEATYSLV 133
>gi|169215726 PREDICTED: family with sequence similarity 108, member
A5 [Homo sapiens]
Length = 403
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 35 GAEGGEPAQEGPCSSDLL---LWSLLATPPAQGRPSPVSSYLAPALNALLV 82
G GG PA+E P + L L L PP GR + ++L P LV
Sbjct: 83 GGPGGGPAREAPAMNGLSLSELCCLFCYPPCPGRIAAKLAFLPPEATYSLV 133
>gi|239746656 PREDICTED: hypothetical protein LOC729495 [Homo
sapiens]
Length = 403
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 35 GAEGGEPAQEGPCSSDLL---LWSLLATPPAQGRPSPVSSYLAPALNALLV 82
G GG PA+E P + L L L PP GR + ++L P LV
Sbjct: 83 GGPGGGPAREAPAMNGLSLSELCCLFCYPPCPGRIAAKLAFLPPEATYSLV 133
>gi|66346723 mitochondrial phosphoenolpyruvate carboxykinase 2
isoform 2 precursor [Homo sapiens]
Length = 441
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 18 LAAGLKAQICMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPP 61
L G+ +GK W G GGE + P S L++ L PP
Sbjct: 395 LPPGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEKLSPQPP 438
>gi|190194360 protocadherin 20 [Homo sapiens]
Length = 951
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 31 VWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQGRPSPVSSYL 73
+W + +GGEPA +LL + PP P SYL
Sbjct: 710 LWVEAVDGGEPALSSTAKITILLLDINDNPPLVLFPQSNMSYL 752
>gi|239754641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 27 CMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQGRPS 67
C+ W+ G PA+ P ++ W +A PP GRP+
Sbjct: 110 CIRCRWASGPAAWWPARAAPAGAETREWRTVARPP-PGRPA 149
>gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo
sapiens]
Length = 229
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 27 CMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQGRPS 67
C+ W+ G PA+ P ++ W +A PP GRP+
Sbjct: 110 CIRCRWASGPAAWWPARAAPAGAETREWRTVARPP-PGRPA 149
>gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo
sapiens]
Length = 229
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 27 CMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQGRPS 67
C+ W+ G PA+ P ++ W +A PP GRP+
Sbjct: 110 CIRCRWASGPAAWWPARAAPAGAETREWRTVARPP-PGRPA 149
>gi|239508944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 27 CMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQGRPS 67
C+ W+ G PA+ P ++ W +A PP GRP+
Sbjct: 110 CIRCRWASGPAAWWPARAAPAGAETREWRTVARPP-PGRPA 149
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 41 PAQEGPCSSDLLLWSLLATPPAQGRPSPVSSYLAPALNALLVSSLQWSSLQPNLKVAAST 100
P+Q PCSS TPP P P + L + LL+ P++ ++AS
Sbjct: 2488 PSQIPPCSSPACTPPPACTPPPAHTPPPAQTCLVTPSSPLLLG-------PPSVPISASV 2540
Query: 101 LTLSL 105
L L
Sbjct: 2541 TNLPL 2545
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 41 PAQEGPCSSDLLLWSLLATPPAQGRP----SPVSSYLAPALNALLVSSLQWSSLQ 91
P P L WS L +PP RP P + L+PAL+ L + + SL+
Sbjct: 644 PPAPQPAPRTLSHWSALLSPPVPPRPPSSGPPPAPPLSPALSGLPRPASPYGSLR 698
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 34 QGAEGGEPAQEGPCSSDLLLWSLLATPPAQGRPSPVSSYLAPALNALLVSSLQWSSLQP 92
+GA G P P +S WS LA+P R SP Y +P SL+ QP
Sbjct: 751 RGAAFGFPGAS-PRASRRRAWSPLASPQPSLRSSPGLGYCSPLAPPSPQLSLRTGPFQP 808
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 28 MGKVWSQGAEGGEP-AQEGPCSSDLLLWSLLATPPAQGRPSP 68
MGK +G E G P + + P S+D + + PP P+P
Sbjct: 1 MGKAGGEGGEAGPPMSAQPPSSADTVPGTTYPPPPPPPPPTP 42
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 28 MGKVWSQGAEGGEP-AQEGPCSSDLLLWSLLATPPAQGRPSP 68
MGK +G E G P + + P S+D + + PP P+P
Sbjct: 1 MGKAGGEGGEAGPPMSAQPPSSADTVPGTTYPPPPPPPPPTP 42
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 28 MGKVWSQGAEGGEP-AQEGPCSSDLLLWSLLATPPAQGRPSP 68
MGK +G E G P + + P S+D + + PP P+P
Sbjct: 1 MGKAGGEGGEAGPPMSAQPPSSADTVPGTTYPPPPPPPPPTP 42
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis critical
region 1 [Homo sapiens]
Length = 1400
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/107 (20%), Positives = 44/107 (41%)
Query: 4 TVARKSNGLVQSPALAAGLKAQICMGKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQ 63
T + S G + A + + M + G+E + + P ++ +S PA+
Sbjct: 1259 TASESSTGSETTRASTSATEVTTAMTTAMTTGSETAVVSTKAPVTTTQSGFSTATVMPAK 1318
Query: 64 GRPSPVSSYLAPALNALLVSSLQWSSLQPNLKVAASTLTLSLLCSAP 110
+ VS+ + L + S+ S + +A+ + TLS + S P
Sbjct: 1319 TTTASVSTTASTTLYQNTIDSVAKSVPTMDSTIASKSTTLSKIVSVP 1365
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 5 VARKSNGLVQSPALAAGLKAQICMGKVWSQGAEGG 39
V KS ++ A A G + Q+C G W+Q A G
Sbjct: 423 VPSKSQAKIEHAAAAQG-QGQVCTGNAWAQKAASG 456
>gi|31542509 ADP-dependent glucokinase [Homo sapiens]
Length = 496
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 44 EGPCSSDLLLWSLLATPPAQGRPSPVS--SYLAPALNALLV 82
E P S+ LWS L PA P PVS LA A +AL+V
Sbjct: 26 ELPGSALRSLWSSLCLGPAPAPPGPVSPEGRLAAAWDALIV 66
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 27.3 bits (59), Expect = 2.7
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 14 QSPALAAGLKAQICMGKVWSQGAEGGEPAQEGPCSSDLLLWSLL-ATPPAQGRPSPVSSY 72
Q P +A + + +G + GG P EGP + L SLL A AQ P P S
Sbjct: 287 QPPVSSATMHLPLVLGPL------GGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPST 340
Query: 73 L------APALNALLVSSLQWSSLQP 92
L A A +A SSL+ S +P
Sbjct: 341 LQGRRPRAQAPSASHSSSLRPSQRRP 366
>gi|239756961 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 12 LVQSPALAAGLKAQICMGKVWSQGAEGGEPAQEGPCSSDLLL------WS--LLATP-PA 62
L+ S G + ++C G A+G PA G CS LLL W+ +L +P P
Sbjct: 45 LICSGGFIPGTRPRLCSGH-----ADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPG 99
Query: 63 QGRPS 67
G PS
Sbjct: 100 PGTPS 104
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 29 GKVWSQGAEGGEPAQEGPCSSDLLLWSLLATPPAQGR-PSPVSSYLAPALNALLVSSLQW 87
G+V + +G + P + SLLA+P Q + P ++S +P VSSL
Sbjct: 124 GEVGERAPDGASQSSHEPMEDAAPILSLLASPDPQAKHPQDLASTPSPGPMTTSVSSL-- 181
Query: 88 SSLQP 92
S+ QP
Sbjct: 182 SASQP 186
>gi|12669911 E2F transcription factor 1 [Homo sapiens]
Length = 437
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 45 GPCSSDLLLWSLLATPPAQGRPSPVSSYLAPAL 77
GPC DLLL+ ATP A P P S PAL
Sbjct: 57 GPCDPDLLLF---ATPQA---PRPTPSAPRPAL 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.125 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,785,442
Number of Sequences: 37866
Number of extensions: 234188
Number of successful extensions: 681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 49
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.