Guide to the Human Genome
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Name: LOC100293959 Sequence: fasta or formatted (110aa) NCBI GI: 239757732
Description:

PREDICTED: similar to KIAA1654 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         15           2
 C cysteine            2.7          3           1
 D aspartate           0.9          1           1
 E glutamate           2.7          3           1
 F phenylalanine       0.0          0           0
 G glycine             7.3          8           2
 H histidine           0.0          0           0
 I isoleucine          0.9          1           1
 K lysine              3.6          4           1
 L leucine            17.3         19           3
 M methionine          2.7          3           1
 N asparagine          2.7          3           1
 P proline             9.1         10           2
 Q glutamine           6.4          7           1
 R arginine            1.8          2           1
 S serine             14.5         16           2
 T threonine           4.5          5           1
 V valine              5.5          6           1
 W tryptophan          2.7          3           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to KIAA1654 protein 
CES7                  0.041   carboxylesterase 7 isoform 1 
CES7                  0.041   carboxylesterase 7 isoform 2 
GUCY1A2               0.021   guanylate cyclase 1, soluble, alpha 2 
CHRNA3                0.021   cholinergic receptor, nicotinic, alpha 3 
NOS3                  0.015   nitric oxide synthase 3 isoform 4 
NOS3                  0.015   nitric oxide synthase 3 isoform 3 
NOS3                  0.015   nitric oxide synthase 3 isoform 2 
NOS3                  0.015   nitric oxide synthase 3 isoform 1 
FAM108A5              0.015   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.015   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.015   PREDICTED: hypothetical protein LOC729495 
PCK2                  0.015   mitochondrial phosphoenolpyruvate carboxykinase 2 is...
PCDH20                0.015   protocadherin 20 
LOC100293578          0.015   PREDICTED: hypothetical protein 
LOC100290886          0.015   PREDICTED: hypothetical protein XP_002346949 
LOC100286960          0.015   PREDICTED: hypothetical protein XP_002342813 
LOC100286960          0.015   PREDICTED: hypothetical protein 
SRCAP                 0.015   Snf2-related CBP activator protein 
MYO15A                0.010   myosin XV 
FLJ20021              0.010   PREDICTED: hypothetical protein 
FLJ20021              0.010   PREDICTED: hypothetical protein 
FLJ20021              0.010   PREDICTED: hypothetical protein 
LOC100294236          0.010   PREDICTED: similar to diffuse panbronchiolitis crit...
PRAGMIN               0.010   pragmin 
ADPGK                 0.010   ADP-dependent glucokinase 
MBD6                  0.010   methyl-CpG binding domain protein 6 
LOC100293844          0.010   PREDICTED: hypothetical protein 
FAM75A3               0.010   hypothetical protein LOC727830 
E2F1                  0.005   E2F transcription factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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