Search of human proteins with 239757690

Search of human proteins with 239757690

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757690 PREDICTED: hypothetical protein [Homo sapiens]
         (132 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757690 PREDICTED: hypothetical protein [Homo sapiens]           277   2e-75
gi|169215684 PREDICTED: hypothetical protein [Homo sapiens]            35   0.022
gi|239747182 PREDICTED: hypothetical protein XP_002343934 [Homo ...    35   0.022
gi|89058402 PREDICTED: hypothetical protein [Homo sapiens]             35   0.022
gi|89037235 PREDICTED: hypothetical protein [Homo sapiens]             35   0.022
gi|33356174 pinin, desmosome associated protein [Homo sapiens]         33   0.085
gi|93102424 hypothetical protein LOC23116 [Homo sapiens]               32   0.15 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        32   0.15 
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi...    31   0.25 
gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]            31   0.25 
gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]            31   0.25 
gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo ...    31   0.25 
gi|4504817 potassium voltage-gated channel, shaker-related subfa...    31   0.25 
gi|10835073 N-myristoyltransferase 1 [Homo sapiens]                    31   0.25 
gi|226693407 TBC1 domain family, member 3H [Homo sapiens]              30   0.42 
gi|14149985 TBC1 domain family, member 3F [Homo sapiens]               30   0.42 
gi|183583565 TBC1 domain family, member 3 [Homo sapiens]               30   0.42 
gi|183583567 TBC1 domain family, member 3E [Homo sapiens]              30   0.42 
gi|149999613 TBC1 domain family, member 3B [Homo sapiens]              30   0.42 
gi|183583563 TBC1 domain family, member 3D [Homo sapiens]              30   0.42 
gi|90577185 TBC1 domain family member 3C [Homo sapiens]                30   0.42 
gi|157502205 TBC1 domain family, member 3G [Homo sapiens]              30   0.42 
gi|9506603 spermatogenesis associated 6 [Homo sapiens]                 30   0.42 
gi|29826329 p21-activated kinase 7 [Homo sapiens]                      30   0.55 
gi|24308191 p21-activated kinase 7 [Homo sapiens]                      30   0.55 
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]     30   0.55 
gi|33356179 transcription termination factor, RNA polymerase I [...    30   0.72 
gi|166064038 PAK-interacting exchange factor beta isoform a [Hom...    30   0.72 
gi|166064036 PAK-interacting exchange factor beta isoform d [Hom...    30   0.72 
gi|166064034 PAK-interacting exchange factor beta isoform c [Hom...    30   0.72 

>gi|239757690 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 132

 Score =  277 bits (709), Expect = 2e-75
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MARIQKCQNEDLSARARRPVKPWASCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHC 60
           MARIQKCQNEDLSARARRPVKPWASCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHC
Sbjct: 1   MARIQKCQNEDLSARARRPVKPWASCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHC 60

Query: 61  SQERLPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQA 120
           SQERLPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQA
Sbjct: 61  SQERLPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQA 120

Query: 121 PGHLTSVVSRQL 132
           PGHLTSVVSRQL
Sbjct: 121 PGHLTSVVSRQL 132


>gi|169215684 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 283

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 63  ERLPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPG 122
           E LP    P +  RA A +L V L  LE V+   Q +     P CS  W +W+   Q PG
Sbjct: 130 EELPDFMAPPVEPRASALELKVWLE-LEVVERGDQHSSSQKLPHCSQSWAQWKLWRQRPG 188

Query: 123 HLT 125
             T
Sbjct: 189 CAT 191


>gi|239747182 PREDICTED: hypothetical protein XP_002343934 [Homo
           sapiens]
          Length = 130

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 63  ERLPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPG 122
           E LP    P +  RA A +L V L  LE V+   Q +     P CS  W +W+   Q PG
Sbjct: 63  EELPDFMAPPVEPRASALELKVWLE-LEVVERGDQHSSSQKLPHCSQSWAQWKLWRQRPG 121

Query: 123 HLT 125
             T
Sbjct: 122 CAT 124


>gi|89058402 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 63  ERLPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPG 122
           E LP    P +  RA A +L V L  LE V+   Q +     P CS  W +W+   Q PG
Sbjct: 63  EELPDFMAPPVEPRASALELKVWLE-LEVVERGDQHSSSQKLPHCSQSWAQWKLWRQRPG 121

Query: 123 HLT 125
             T
Sbjct: 122 CAT 124


>gi|89037235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 63  ERLPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPG 122
           E LP    P +  RA A +L V L  LE V+   Q +     P CS  W +W+   Q PG
Sbjct: 63  EELPDFMAPPVEPRASALELKVWLE-LEVVERGDQHSSSQKLPHCSQSWAQWKLWRQRPG 121

Query: 123 HLT 125
             T
Sbjct: 122 CAT 124


>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
          Length = 717

 Score = 32.7 bits (73), Expect = 0.085
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 19  PVKPWASCDTGRETPS-----QKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHSVPLL 73
           P K   S   G+E  S     ++ ++K+++ SEP      QP      Q +L   S P+L
Sbjct: 435 PDKECKSLSPGKENVSALDMEKESEEKEEKESEPQPEPVAQPQPQSQPQLQLQSQSQPVL 494

Query: 74  PVRAQAEDLPVGLSCLEPVQPIPQFT 99
             ++Q    P  LS L  +QP PQ T
Sbjct: 495 --QSQPPSQPEDLS-LAVLQPTPQVT 517


>gi|93102424 hypothetical protein LOC23116 [Homo sapiens]
          Length = 1720

 Score = 32.0 bits (71), Expect = 0.15
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 5   QKCQNEDLSARARRPVKPWASCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHCSQER 64
           +K Q+  ++     P+K +     G   PS +KK   ++ S+P+ R   +      SQE+
Sbjct: 838 KKSQDNSVNFSNSWPLKSFE----GLSKPSPQKKLVSQKSSDPTGRNHGEN-----SQEK 888

Query: 65  LPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQ 97
            P   V L P   ++     GL+  +PV PIP+
Sbjct: 889 PP---VQLTPALVRSPSSRRGLNGTKPVPPIPR 918


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 32.0 bits (71), Expect = 0.15
 Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 7/41 (17%)

Query: 16  ARRPVKPWA----SCDTGRETPSQKKKKKKK---RRSEPSS 49
           A  P KP++    S  +   TP QKKKKKKK   RRSE SS
Sbjct: 164 APEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSS 204


>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
           sapiens]
          Length = 729

 Score = 31.2 bits (69), Expect = 0.25
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 9   NEDLSARARRPVKPWASCDTGRE--TPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLP 66
           + DL         P  S + G+E  TPS++KKKKKK+  E   +  K+ +    S+++  
Sbjct: 624 DSDLFGLGLEEAGPKESSEEGKEGKTPSKEKKKKKKKGKEEEEKAAKKKSKHKKSKDKEE 683

Query: 67  G 67
           G
Sbjct: 684 G 684


>gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 503

 Score = 31.2 bits (69), Expect = 0.25
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 12  LSARARRPVKPWASCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHSVP 71
           L  ++ RP +P  S      +P +K   +K R S+ ++RE   P      + +LP     
Sbjct: 366 LLGKSVRPKEPKHS------SPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPE 419

Query: 72  LLPVRAQAEDLPVGLSCLEPVQPI-----PQFTLLVGSPRCSCPWTEWQAILQAP 121
           L+ +  +  +   G   +   Q +       FTL    PRC     +WQ  +  P
Sbjct: 420 LISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVPRCHASSGDWQPPVHPP 474


>gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 518

 Score = 31.2 bits (69), Expect = 0.25
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 12  LSARARRPVKPWASCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHSVP 71
           L  ++ RP +P  S      +P +K   +K R S+ ++RE   P      + +LP     
Sbjct: 366 LLGKSVRPKEPKHS------SPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPE 419

Query: 72  LLPVRAQAEDLPVGLSCLEPVQPI-----PQFTLLVGSPRCSCPWTEWQAILQAP 121
           L+ +  +  +   G   +   Q +       FTL    PRC     +WQ  +  P
Sbjct: 420 LISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVPRCHASSGDWQPPVHPP 474


>gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo
           sapiens]
          Length = 518

 Score = 31.2 bits (69), Expect = 0.25
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 12  LSARARRPVKPWASCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHSVP 71
           L  ++ RP +P  S      +P +K   +K R S+ ++RE   P      + +LP     
Sbjct: 366 LLGKSVRPKEPKHS------SPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPE 419

Query: 72  LLPVRAQAEDLPVGLSCLEPVQPI-----PQFTLLVGSPRCSCPWTEWQAILQAP 121
           L+ +  +  +   G   +   Q +       FTL    PRC     +WQ  +  P
Sbjct: 420 LISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVPRCHASSGDWQPPVHPP 474


>gi|4504817 potassium voltage-gated channel, shaker-related
           subfamily, member 4 [Homo sapiens]
          Length = 653

 Score = 31.2 bits (69), Expect = 0.25
 Identities = 13/57 (22%), Positives = 29/57 (50%)

Query: 25  SCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHSVPLLPVRAQAED 81
           +C +     S+  ++++++RSE     ++Q + PHCS     G    +L   ++ E+
Sbjct: 70  ACTSHDPQSSRGSRRRRRQRSEKKKAHYRQSSFPHCSDLMPSGSEEKILRELSEEEE 126


>gi|10835073 N-myristoyltransferase 1 [Homo sapiens]
          Length = 496

 Score = 31.2 bits (69), Expect = 0.25
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 7  CQNEDLSARARRPVKPWASCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERL 65
          C+NE+ ++  R  + P  + DTG +   +K+KKKK++ SE  S + +   +     ER+
Sbjct: 33 CENEEDNSYNRGGLSP--ANDTGAKKKKKKQKKKKEKGSETDSAQDQPVKMNSLPAERI 89


>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
          Length = 549

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 19  PVKPWASCDTGRETPSQKKKK---KKKRRSEPSS-REFKQPTVPHCSQERLPGHSVPLLP 74
           P KP       R  P+ +  K   K  R++ P     F +P +   S  R P  S P   
Sbjct: 360 PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRP-IWSASPPRAPRSSTPCPG 418

Query: 75  VRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPGHL 124
              + +  PVG       Q +P   L  G P+ S  + +W ++ + P  L
Sbjct: 419 GAVREDTYPVG------TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDL 462


>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
          Length = 549

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 19  PVKPWASCDTGRETPSQKKKK---KKKRRSEPSS-REFKQPTVPHCSQERLPGHSVPLLP 74
           P KP       R  P+ +  K   K  R++ P     F +P +   S  R P  S P   
Sbjct: 360 PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRP-IWSASPPRAPRSSTPCPG 418

Query: 75  VRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPGHL 124
              + +  PVG       Q +P   L  G P+ S  + +W ++ + P  L
Sbjct: 419 GAVREDTYPVG------TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDL 462


>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
          Length = 549

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 19  PVKPWASCDTGRETPSQKKKK---KKKRRSEPSS-REFKQPTVPHCSQERLPGHSVPLLP 74
           P KP       R  P+ +  K   K  R++ P     F +P +   S  R P  S P   
Sbjct: 360 PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRP-IWSASPPRAPRSSTPCPG 418

Query: 75  VRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPGHL 124
              + +  PVG       Q +P   L  G P+ S  + +W ++ + P  L
Sbjct: 419 GAVREDTYPVG------TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDL 462


>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
          Length = 549

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 19  PVKPWASCDTGRETPSQKKKK---KKKRRSEPSS-REFKQPTVPHCSQERLPGHSVPLLP 74
           P KP       R  P+ +  K   K  R++ P     F +P +   S  R P  S P   
Sbjct: 360 PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRP-IWSASPPRAPRSSTPCPG 418

Query: 75  VRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPGHL 124
              + +  PVG       Q +P   L  G P+ S  + +W ++ + P  L
Sbjct: 419 GAVREDTYPVG------TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDL 462


>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
          Length = 549

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 19  PVKPWASCDTGRETPSQKKKK---KKKRRSEPSS-REFKQPTVPHCSQERLPGHSVPLLP 74
           P KP       R  P+ +  K   K  R++ P     F +P +   S  R P  S P   
Sbjct: 360 PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRP-IWSASPPRAPRSSTPCPG 418

Query: 75  VRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPGHL 124
              + +  PVG       Q +P   L  G P+ S  + +W ++ + P  L
Sbjct: 419 GAVREDTYPVG------TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDL 462


>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
          Length = 549

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 19  PVKPWASCDTGRETPSQKKKK---KKKRRSEPSS-REFKQPTVPHCSQERLPGHSVPLLP 74
           P KP       R  P+ +  K   K  R++ P     F +P +   S  R P  S P   
Sbjct: 360 PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRP-IWSASPPRAPRSSTPCPG 418

Query: 75  VRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPGHL 124
              + +  PVG       Q +P   L  G P+ S  + +W ++ + P  L
Sbjct: 419 GAVREDTYPVG------TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDL 462


>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
          Length = 549

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 19  PVKPWASCDTGRETPSQKKKK---KKKRRSEPSS-REFKQPTVPHCSQERLPGHSVPLLP 74
           P KP       R  P+ +  K   K  R++ P     F +P +   S  R P  S P   
Sbjct: 360 PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRP-IWSASPPRAPRSSTPCPG 418

Query: 75  VRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPGHL 124
              + +  PVG       Q +P   L  G P+ S  + +W ++ + P  L
Sbjct: 419 GAVREDTYPVG------TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDL 462


>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
          Length = 549

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 19  PVKPWASCDTGRETPSQKKKK---KKKRRSEPSS-REFKQPTVPHCSQERLPGHSVPLLP 74
           P KP       R  P+ +  K   K  R++ P     F +P +   S  R P  S P   
Sbjct: 360 PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRP-IWSASPPRAPRSSTPCPG 418

Query: 75  VRAQAEDLPVGLSCLEPVQPIPQFTLLVGSPRCSCPWTEWQAILQAPGHL 124
              + +  PVG       Q +P   L  G P+ S  + +W ++ + P  L
Sbjct: 419 GAVREDTYPVG------TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDL 462


>gi|9506603 spermatogenesis associated 6 [Homo sapiens]
          Length = 488

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 22/140 (15%)

Query: 5   QKCQNEDLSARARRPVKPWASCDTGRETPSQKKKKKKKRRSE--PSSREFKQPTVPHCS- 61
           +KC  +D       PV+        R + SQKKK K   RS+   +++ ++QPT+   S 
Sbjct: 157 RKCHTQDKFIYHLAPVEKSHGRLQNRTSRSQKKKSKSPERSKYCINAKNYEQPTISSKSH 216

Query: 62  -----------------QERLPGHSVPLLPVRAQAEDLPVGLSCLEPVQPIPQFTLLVGS 104
                            + RL   ++     + + +  P  +  ++P  P P+   L+GS
Sbjct: 217 SPSPYTKRRMCELSEDTRRRLAHLNLGPYEFKKETDKPPFVIRHVDP--PSPRADTLLGS 274

Query: 105 PRCSCPWTEWQAILQAPGHL 124
               C    W  +     HL
Sbjct: 275 SGRDCERDGWSRVHNDHSHL 294


>gi|29826329 p21-activated kinase 7 [Homo sapiens]
          Length = 719

 Score = 30.0 bits (66), Expect = 0.55
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 37  KKKKKKRRSEPSSREFKQPTVPHCSQERLPG-----HSVPLLPVRAQAEDLPVGLSCLEP 91
           KKKKK   S PS+ E +  T     +++  G     HS  LL   A      V  SC+ P
Sbjct: 4   KKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHS--LLADTANRPKPMVDPSCITP 61

Query: 92  VQPIPQFTLLVGSPRC 107
           +Q  P  T++ G+  C
Sbjct: 62  IQLAPMKTIVRGNKPC 77


>gi|24308191 p21-activated kinase 7 [Homo sapiens]
          Length = 719

 Score = 30.0 bits (66), Expect = 0.55
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 37  KKKKKKRRSEPSSREFKQPTVPHCSQERLPG-----HSVPLLPVRAQAEDLPVGLSCLEP 91
           KKKKK   S PS+ E +  T     +++  G     HS  LL   A      V  SC+ P
Sbjct: 4   KKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHS--LLADTANRPKPMVDPSCITP 61

Query: 92  VQPIPQFTLLVGSPRC 107
           +Q  P  T++ G+  C
Sbjct: 62  IQLAPMKTIVRGNKPC 77


>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
          Length = 951

 Score = 30.0 bits (66), Expect = 0.55
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 25  SCDTGRETPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHS 69
           S D  RE   +KKKKK K+RS   SR    P     S+ R   HS
Sbjct: 745 SKDPPREEEKEKKKKKHKKRSRTRSR---SPKYHSSSKSRSRSHS 786


>gi|33356179 transcription termination factor, RNA polymerase I
           [Homo sapiens]
          Length = 905

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 33  PSQKKKKKKKRRSEPSSREFKQPTVPHCSQ 62
           P+ KKK KKK++ + + +EF+   +P  SQ
Sbjct: 269 PTHKKKSKKKKKKKSNHQEFEALAMPEGSQ 298



 Score = 26.9 bits (58), Expect = 4.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 23  WASCDTGRETP----SQKKKKKKKRRSEPSSREFKQPTVPHCSQ 62
           W S   G E      S  K K KK++ + S+RE++   +P  SQ
Sbjct: 198 WLSVGPGGEITELPASAHKNKSKKKKKKSSNREYETLAMPEGSQ 241


>gi|166064038 PAK-interacting exchange factor beta isoform a [Homo
           sapiens]
          Length = 646

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 32  TPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHSVPLLPVRAQAEDLPVGLSCLEP 91
           TPS K    K     P+       T+PH S    P  ++   P+       P  LSCL P
Sbjct: 425 TPSSKHADSKPAPLTPAYH-----TLPHPSHHGTPHTTINWGPLEPPKTPKPWSLSCLRP 479

Query: 92  VQPI 95
             P+
Sbjct: 480 APPL 483


>gi|166064036 PAK-interacting exchange factor beta isoform d [Homo
           sapiens]
          Length = 753

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 32  TPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHSVPLLPVRAQAEDLPVGLSCLEP 91
           TPS K    K     P+       T+PH S    P  ++   P+       P  LSCL P
Sbjct: 553 TPSSKHADSKPAPLTPAYH-----TLPHPSHHGTPHTTINWGPLEPPKTPKPWSLSCLRP 607

Query: 92  VQPI 95
             P+
Sbjct: 608 APPL 611


>gi|166064034 PAK-interacting exchange factor beta isoform c [Homo
           sapiens]
          Length = 803

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 32  TPSQKKKKKKKRRSEPSSREFKQPTVPHCSQERLPGHSVPLLPVRAQAEDLPVGLSCLEP 91
           TPS K    K     P+       T+PH S    P  ++   P+       P  LSCL P
Sbjct: 603 TPSSKHADSKPAPLTPAYH-----TLPHPSHHGTPHTTINWGPLEPPKTPKPWSLSCLRP 657

Query: 92  VQPI 95
             P+
Sbjct: 658 APPL 661


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.130    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,456,590
Number of Sequences: 37866
Number of extensions: 346999
Number of successful extensions: 2497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 2315
Number of HSP's gapped (non-prelim): 243
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.