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Search of human proteins with 239757414
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo
sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo ... 372 e-103
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 238 2e-63
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 238 2e-63
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 46 1e-05
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 46 1e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 44 7e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 9e-05
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 43 1e-04
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 43 2e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 43 2e-04
gi|112421108 capicua homolog [Homo sapiens] 43 2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 2e-04
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 42 3e-04
gi|120587019 zinc finger protein 318 [Homo sapiens] 42 3e-04
gi|148762978 similar to CG15216-PA [Homo sapiens] 42 3e-04
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ... 42 4e-04
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 42 4e-04
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 41 5e-04
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 41 5e-04
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 41 6e-04
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 40 8e-04
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 40 0.001
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 40 0.001
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 40 0.001
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 40 0.001
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 40 0.001
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 40 0.001
gi|226437579 NAC alpha domain containing [Homo sapiens] 39 0.002
>gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo
sapiens]
Length = 176
Score = 372 bits (954), Expect = e-103
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL 60
MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL
Sbjct: 1 MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL 60
Query: 61 GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDP 120
GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDP
Sbjct: 61 GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDP 120
Query: 121 AAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETPGRADSG 176
AAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETPGRADSG
Sbjct: 121 AAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETPGRADSG 176
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 238 bits (607), Expect = 2e-63
Identities = 122/177 (68%), Positives = 128/177 (72%), Gaps = 2/177 (1%)
Query: 1 MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL 60
MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL
Sbjct: 1 MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL 60
Query: 61 GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDP 120
GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGG + + P P
Sbjct: 61 GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTP 120
Query: 121 AAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGV-ETPGRADSG 176
P P P + +R L G L+ P R G + PG G
Sbjct: 121 PRSGLDPAVPSPTPAPLARC-RQTRAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQG 176
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 238 bits (607), Expect = 2e-63
Identities = 122/177 (68%), Positives = 128/177 (72%), Gaps = 2/177 (1%)
Query: 1 MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL 60
MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL
Sbjct: 1 MGGTLSGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPL 60
Query: 61 GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDP 120
GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGG + + P P
Sbjct: 61 GRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTP 120
Query: 121 AAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGV-ETPGRADSG 176
P P P + +R L G L+ P R G + PG G
Sbjct: 121 PRSGLDPAVPSPTPAPLARC-RQTRAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQG 176
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 46.2 bits (108), Expect = 1e-05
Identities = 42/134 (31%), Positives = 54/134 (40%), Gaps = 22/134 (16%)
Query: 41 GDAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYH 100
G RV AA AAA PG R P+ A P SS T+ R RR R L P H
Sbjct: 148 GRTRRVVAAPESAAAAPG---RSPSPADPGSTSSATRVPRARRSSRRALQPR-------H 197
Query: 101 SARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQA----------- 149
+A G P + +++ +P PA P R P +R + G+ A
Sbjct: 198 AAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRLLSRTRQRELGGSAAPSVAFSGDVTL 257
Query: 150 -LHRGAPLASPAPR 162
L RG A P P+
Sbjct: 258 SLERGPASAKPPPQ 271
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 46.2 bits (108), Expect = 1e-05
Identities = 42/134 (31%), Positives = 54/134 (40%), Gaps = 22/134 (16%)
Query: 41 GDAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYH 100
G RV AA AAA PG R P+ A P SS T+ R RR R L P H
Sbjct: 148 GRTRRVVAAPESAAAAPG---RSPSPADPGSTSSATRVPRARRSSRRALQPR-------H 197
Query: 101 SARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQA----------- 149
+A G P + +++ +P PA P R P +R + G+ A
Sbjct: 198 AAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRLLSRTRQRELGGSAAPSVAFSGDVTL 257
Query: 150 -LHRGAPLASPAPR 162
L RG A P P+
Sbjct: 258 SLERGPASAKPPPQ 271
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 43.9 bits (102), Expect = 7e-05
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 52 RAAARPGPLGRP--PTRAGPAQRSSCTQPHRRRRRGTRR-----LPPALTPAGPYHSARP 104
+A A P P G P P+ G + T P + T PPA TP P
Sbjct: 920 KARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPK----- 974
Query: 105 GGGGPCQGSARFSPDP-AAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRG 163
GGP S + +P P AA P P+G P + S + P +G+P A+P P+G
Sbjct: 975 --GGPATPSPKGAPTPPAATPPSPKGG-PATPSPKGAPTPPAVTPPSPKGSPAATPFPKG 1031
Score = 40.8 bits (94), Expect = 6e-04
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 53 AAARPGPLGRP---PTRAGPAQRSSCTQPHRRRRRGTRRLPPAL--TPAGPYHSARPGGG 107
A P P G P P G + + T P + LP TPA S + G
Sbjct: 1013 AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK---G 1069
Query: 108 GPCQGSARFSPDP-AAVRPQPRG----PQPDSG--SARQVPPDSRGAQAL--HRGAP--- 155
GP S + +P P AA P P+G P P PP +G A H+GAP
Sbjct: 1070 GPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTP 1129
Query: 156 -LASPAPRGVRGVETP 170
P+P+G G+ TP
Sbjct: 1130 AATPPSPKG--GLATP 1143
Score = 40.4 bits (93), Expect = 8e-04
Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 57 PGPLGRPPTRA--GPAQRSSCTQPHRRRRRGT-----RRLPPALTPAGP-----YHSARP 104
P P G P T G + T P + GT PPA+TP P + P
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTP 1354
Query: 105 GG-GGPCQGSARFSPDPAAVRPQPRG------PQPDSGSARQVPPDSRGAQALHRGAPLA 157
GGP S++ P P A P +G P P G A P + A+ +P
Sbjct: 1355 SSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKK 1414
Query: 158 SPA-PRGVRGVETPGRAD 174
+PA P G TP + D
Sbjct: 1415 APATPVTREGAATPSKGD 1432
Score = 36.2 bits (82), Expect = 0.015
Identities = 37/128 (28%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 39 HRGDAARVDAAALRAAARPGPLGRP--PTRAGPAQRSSCTQPHRRRRRGTRR----LPPA 92
H+G A + R A P P G P P + + + P R T PPA
Sbjct: 1378 HKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPA 1437
Query: 93 LTPAG----PYHSARPGGGGPCQGSARFSPD-PAAVRPQPRGPQPDSGSARQVPPDSRGA 147
+TP P SA GG P S++ P PA P P+ P A P A
Sbjct: 1438 VTPVSLKKAPATSAPKGG--PATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPA 1495
Query: 148 QALHRGAP 155
GAP
Sbjct: 1496 TPAPMGAP 1503
Score = 35.8 bits (81), Expect = 0.020
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 8/120 (6%)
Query: 53 AAARPGPLG--RPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPC 110
AA P P G P+ G + T P + G PP P P + GG
Sbjct: 1222 AATPPSPKGGLATPSPKGAPTTPAATPPSPKG--GPATPPPKGAPTPPAATPPSLKGGLA 1279
Query: 111 QGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETP 170
+ +P+PA V P P P G A P + A +P SP +G TP
Sbjct: 1280 TPPHKGAPNPAVVTP----PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTP 1335
Score = 34.7 bits (78), Expect = 0.044
Identities = 33/130 (25%), Positives = 43/130 (33%), Gaps = 12/130 (9%)
Query: 55 ARPGPLGRPPTRAG--PAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQG 112
A P P G P T A P+ + P + T P +P G + P G
Sbjct: 1141 ATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPP-SPKGGLATPSPKGAPTTPA 1199
Query: 113 SARFSPDPAAVRPQPRG---------PQPDSGSARQVPPDSRGAQALHRGAPLASPAPRG 163
+ SP P P+G P P G A P + A +P PA
Sbjct: 1200 ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPP 1259
Query: 164 VRGVETPGRA 173
+G TP A
Sbjct: 1260 PKGAPTPPAA 1269
Score = 33.9 bits (76), Expect = 0.075
Identities = 40/141 (28%), Positives = 50/141 (35%), Gaps = 35/141 (24%)
Query: 55 ARPGPLGRPPTRAG--PAQRSSCTQPHRRRRRGTRRLPPALTP-------AGPYHSARPG 105
A P P G P T A P+ + P + PPA TP A P H P
Sbjct: 1233 ATPSPKGAPTTPAATPPSPKGGPATPPPKGAP----TPPAATPPSLKGGLATPPHKGAPN 1288
Query: 106 G---------GGPCQGSARFSPDP-AAVRPQPRG----PQPDSGSA--RQVPPDSRGAQA 149
GGP + +P P AA P P+G P P PP +G
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPT 1348
Query: 150 LHRGAPLASPAPRGVRGVETP 170
L P +P+ +G G TP
Sbjct: 1349 L----PATTPSSKG--GPTTP 1363
Score = 29.6 bits (65), Expect = 1.4
Identities = 35/141 (24%), Positives = 44/141 (31%), Gaps = 16/141 (11%)
Query: 49 AALRAAARPGPLGRP-PTRAGPAQRSSCTQPHRRRRR-GTRRLP-PALTPAGPYHSARPG 105
A + P P G P P+ P T P + LP P PA P P
Sbjct: 851 ATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPA 910
Query: 106 ----GGGPCQGSARFSPDPAAVRPQPRG---------PQPDSGSARQVPPDSRGAQALHR 152
P + A +P P P+G P P G A P + A
Sbjct: 911 LSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATP 970
Query: 153 GAPLASPAPRGVRGVETPGRA 173
+P PA +G TP A
Sbjct: 971 PSPKGGPATPSPKGAPTPPAA 991
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.5 bits (101), Expect = 9e-05
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 38/197 (19%)
Query: 6 SGPHPDRVHEAL----HLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPLG 61
SGP P A+ G + G RP A+ G V +A+ + P P
Sbjct: 165 SGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAA 224
Query: 62 R-------------------------PPTRAGPAQRS---SCTQPHRRRRRGTRRL-PPA 92
R P R+GP+ R + P + + +G + L PP
Sbjct: 225 RRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ 284
Query: 93 LTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHR 152
+TP P A P GP S +P P+ + +P P PD+ +A +P + L
Sbjct: 285 VTP--PRKDAAP-ALGPLSSSPLATPSPSGTKARP-VPPPDN-AATPLPATLPPSPPLAT 339
Query: 153 GAPLASPAPRGVRGVET 169
PLA P+P ++T
Sbjct: 340 PLPLAPPSPSAPPSLQT 356
Score = 30.0 bits (66), Expect = 1.1
Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 46 VDAAALRAAARPGPLGRPP--TRAG---------PAQRSSCTQPHRRRRRGTRRLPPALT 94
V AALR G +GR P RAG A R+ T+ R PPA
Sbjct: 39 VTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASG 98
Query: 95 PAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGA 154
A+ GP R S RP P G + SA + + +A R A
Sbjct: 99 RGERAPPAKNTSPGPVSSPGRAS---GTTRPGPLGQKGLRISAEETVARGKATEAPKRSA 155
Query: 155 PLASPAPRGVRGVETPG 171
L++ A R G TPG
Sbjct: 156 -LSAGARRDTSG-PTPG 170
Score = 28.9 bits (63), Expect = 2.4
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 23/87 (26%)
Query: 90 PPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSAR----------- 138
PPA P P SA P P Q + P V P P P S SA
Sbjct: 679 PPASPPVSP--SATP----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAA 732
Query: 139 ---QVPPDSRGAQALHRGAPLASPAPR 162
QVPP + + +P A+P PR
Sbjct: 733 PPLQVPPSPPASPPM---SPSATPPPR 756
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 43.1 bits (100), Expect = 1e-04
Identities = 44/136 (32%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 55 ARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGT---RRLPPALTPAG-PYHSARPGGGGPC 110
A+ P G PP RA PAQ S P + GT R P +PAG P A PG P
Sbjct: 22 AQASPAGTPPGRASPAQAS----PAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPA 77
Query: 111 QGS------ARFSPDPAAVRPQPRGPQPDSGSARQVPPDSR---------GAQALHRGAP 155
Q S AR SP A++ G + SA +R GA +
Sbjct: 78 QASPAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPA 137
Query: 156 LASPAPRGVRGVETPG 171
++PA R R E+PG
Sbjct: 138 RSAPATRATR--ESPG 151
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 42.7 bits (99), Expect = 2e-04
Identities = 57/172 (33%), Positives = 61/172 (35%), Gaps = 31/172 (18%)
Query: 23 QHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPLG--------RP---PTRAGPAQ 71
+HG + P Q RG R A A PG LG RP P R PA
Sbjct: 34 RHGPRTPG--GQLPGARRGPGPRRPAPL--PARPPGALGSVLRPLRARPGCRPRRPHPAA 89
Query: 72 RSSCTQPHRRRRRGTR---------RLPPALTPAGPYHSARPGGGGPCQGSARFS-PDPA 121
R +PHR RR R PA PA SA GG G AR P +
Sbjct: 90 RCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGS 149
Query: 122 AVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETPGRA 173
R P GP G V P RG A G P R VR ET G A
Sbjct: 150 GGRSHPGGPGSPRGGG-TVGPGDRGPAAADGGRP-----QRTVRAAETRGAA 195
Score = 28.5 bits (62), Expect = 3.1
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 18/72 (25%)
Query: 46 VDAAALRAAARPGPL----------GRPPTRAGP------AQRSSCTQPHRRRRRGTRRL 89
V AA R AA PL G P GP AQ +CT+P R G R L
Sbjct: 186 VRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPL 245
Query: 90 PP--ALTPAGPY 99
PP L AG +
Sbjct: 246 PPPDTLASAGDF 257
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 42.7 bits (99), Expect = 2e-04
Identities = 39/128 (30%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 57 PGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARF 116
PGPLG P + Q+ S P G R + P G + PG G + A
Sbjct: 593 PGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRG--EAGPPGSGEKGERGAAG 650
Query: 117 SPDPAAVR--PQPRGPQPDSGS-ARQVPPDSRGAQALHRG-----------APLASPAPR 162
P P P GP+ SGS Q PP G Q L RG P+ P P+
Sbjct: 651 EPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGL-RGEVGLPGVKGDKGPMGPPGPK 709
Query: 163 GVRGVETP 170
G +G + P
Sbjct: 710 GDQGEKGP 717
Score = 31.6 bits (70), Expect = 0.37
Identities = 34/119 (28%), Positives = 38/119 (31%), Gaps = 7/119 (5%)
Query: 58 GPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFS 117
G G P R P +P +G + LP TP P PG G S S
Sbjct: 758 GLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPG--TPGRPGIKGEPGAPGKIVTSEGSS 815
Query: 118 PDPAAVRPQPRG----PQPDSGSARQVPPDSRGAQ-ALHRGAPLASPAPRGVRGVETPG 171
P P G P P P G Q L+ P P PRG G PG
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPG 874
Score = 28.9 bits (63), Expect = 2.4
Identities = 31/138 (22%), Positives = 39/138 (28%), Gaps = 28/138 (20%)
Query: 57 PGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARF 116
PG +G P P P + + P P GP + PG GP
Sbjct: 826 PGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEG 885
Query: 117 SPDPAA------------VRPQPRGPQPDSGSARQVPPDSRGAQ---------------- 148
P P + P P P Q PP RG Q
Sbjct: 886 LPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSF 945
Query: 149 ALHRGAPLASPAPRGVRG 166
L+ P P P+G +G
Sbjct: 946 GLNLQGPPGPPGPQGPKG 963
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 42.7 bits (99), Expect = 2e-04
Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 21/176 (11%)
Query: 6 SGPHPDRVHEALHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPLGRPPT 65
+ P P ++ V QRP A + V + V + A+ RPGP R P
Sbjct: 1149 TSPFPSATAGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRPGPAPRQPL 1208
Query: 66 RAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRP 125
GP + + + + PPA P P P S+ P PA R
Sbjct: 1209 EPGPVREPTAPESELE----GQPTPPAPPPL-------PETWTPTARSSPPLPPPAEERT 1257
Query: 126 QPRGPQ------PDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETPGRADS 175
+GP+ P S S +VP G +RG P P+P V G ++S
Sbjct: 1258 SAKGPETMASKFPSSSSDWRVP----GQGLENRGEPPTPPSPAPAPAVAPGGSSES 1309
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 22/79 (27%)
Query: 90 PPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQV-----PPDS 144
PP T A P + P GG P P P DSG+A+ PP+S
Sbjct: 1539 PPTGTAAAPAPTPSPAGG-----------------PDPTSPSSDSGTAQAAPPLPPPPES 1581
Query: 145 RGAQALHRGAPLASPAPRG 163
Q GAP SP P G
Sbjct: 1582 GPGQPGWEGAPQPSPPPPG 1600
Score = 33.1 bits (74), Expect = 0.13
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 57 PGP--LGRPPTRAGPAQRSSCTQPHRRRRRGT-RRLPPALTPAGPYHSARPGGGGPCQGS 113
PGP + PP+ G ++ P++ + G R+P A P+ Y + P
Sbjct: 612 PGPSVIAAPPSGGGNILQTLVLPPNKEEQEGGGARVPSAPAPSLAYGAPAAPLSRPAATM 671
Query: 114 ARFSPDPAAVRPQPRG--PQPDSGSARQVPPDSRGAQA-LHRGAPLASPAPRGV 164
P + P P P P SG A P D+ GA+ + G+ + +P GV
Sbjct: 672 VTNVVRPVSSTPVPIASKPFPTSGRAEASPNDTAGARTEMGTGSRVPGGSPLGV 725
Score = 29.6 bits (65), Expect = 1.4
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 96 AGPYHSARPGGGGPCQGS--ARFSP-DPAAV-RPQPR---GPQPDSGSARQVPPDSRG 146
AGP PG GGP S RF P DPA R +P G +P S PP G
Sbjct: 568 AGPLRPPPPGAGGPATPSKATRFLPMDPATFRRKRPESVGGLEPPGPSVIAAPPSGGG 625
Score = 27.7 bits (60), Expect = 5.4
Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 24/115 (20%)
Query: 57 PGPLGRPPTRA----GPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSAR-PGGGGPCQ 111
P P P T+A GPA +S R T LPP + G +A P G P
Sbjct: 840 PAPAPAPGTKAAAPSGPAPTTSI--------RFT--LPPGTSTNGKVLAATAPTPGIPIL 889
Query: 112 GSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRG 166
S +P P A P P GSA+ +P + L PLA+P+ VRG
Sbjct: 890 QSVPSAPPPKAQSVSPVQAPPPGGSAQLLP-----GKVL---VPLAAPS-MSVRG 935
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.4 bits (98), Expect = 2e-04
Identities = 45/140 (32%), Positives = 56/140 (40%), Gaps = 30/140 (21%)
Query: 54 AARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGS 113
A PG G P + P + S P + RG P A P P H PG GP S
Sbjct: 1007 AGEPGRDGNPGSDGLPGRDGS---PGGKGDRGENGSPGA--PGAPGHPGPPGPVGPAGKS 1061
Query: 114 A----------RFSPDPAAVR--PQPRGPQPDSGSARQVPPDSRGAQAL--HRGAP---- 155
+P PA R P P+GP+ D G + RGA + HRG P
Sbjct: 1062 GDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGE-----RGAAGIKGHRGFPGNPG 1116
Query: 156 -LASPAPRGVRG-VETPGRA 173
SP P G +G + +PG A
Sbjct: 1117 APGSPGPAGQQGAIGSPGPA 1136
Score = 32.7 bits (73), Expect = 0.17
Identities = 33/114 (28%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 53 AAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQG 112
A GP G P + P QR +P + G + P P + PGG G G
Sbjct: 349 AKGEVGPAGSPGSNGAPGQRG---EPGPQGHAGAQG-----PPGPPGINGSPGGKGE-MG 399
Query: 113 SARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRG 166
A P + RGP P A P GA + P PRG RG
Sbjct: 400 PAGIPGAPGLM--GARGP-PGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG 450
Score = 32.7 bits (73), Expect = 0.17
Identities = 35/128 (27%), Positives = 44/128 (34%), Gaps = 11/128 (8%)
Query: 53 AAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQG 112
A PGP G + G + P G R PP A R G G P +
Sbjct: 379 AQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARG-PPGPAGANGAPGLRGGAGEPGKN 437
Query: 113 SARFSPDPAAVR--------PQPRGPQPDSGSARQVPPDSRGAQALHRGAP-LASPA-PR 162
A+ P P R P +G GS + + A RGAP PA P
Sbjct: 438 GAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPN 497
Query: 163 GVRGVETP 170
G+ G + P
Sbjct: 498 GIPGEKGP 505
Score = 32.7 bits (73), Expect = 0.17
Identities = 36/131 (27%), Positives = 44/131 (33%), Gaps = 34/131 (25%)
Query: 58 GPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPC--QGSAR 115
GP G+P P + + P + RG P GP PG G QG
Sbjct: 570 GPRGQPGVMGFPGPKGNDGAPGKNGERG--------GPGGPGPQGPPGKNGETGPQGP-- 619
Query: 116 FSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQAL--------HRGAPLASPAPRGVRGV 167
P P GP D G PP +G Q L G P P P+G G
Sbjct: 620 ---------PGPTGPGGDKGDTG--PPGPQGLQGLPGTGGPPGENGKP-GEPGPKGDAGA 667
Query: 168 --ETPGRADSG 176
G+ D+G
Sbjct: 668 PGAPGGKGDAG 678
Score = 32.0 bits (71), Expect = 0.28
Identities = 34/125 (27%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 57 PGPLGRPPTRAGPA---QRSSCTQPHRRRRRGTRRLPPALTPAG--PYHSARPGGGGPCQ 111
PGP G P + QP + G + P A P G AR G P
Sbjct: 905 PGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGM 964
Query: 112 GSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVE-TP 170
R SP P V+ + P + S + PP +G L P G G + P
Sbjct: 965 PGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGL--AGTAGEPGRDGNPGSDGLP 1022
Query: 171 GRADS 175
GR S
Sbjct: 1023 GRDGS 1027
Score = 31.2 bits (69), Expect = 0.49
Identities = 31/115 (26%), Positives = 36/115 (31%), Gaps = 23/115 (20%)
Query: 57 PGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARF 116
PG G P + P +R P + +G P GP PG GP +
Sbjct: 716 PGAAGTPGLQGMPGERGGLGSPGPKGDKGE--------PGGPGADGVPGKDGPRGPTGPI 767
Query: 117 SPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHR-GAPLASPAPRGVRGVETP 170
P P P G D G GA L P SP RG G P
Sbjct: 768 GP------PGPAGQPGDKGEG--------GAPGLPGIAGPRGSPGERGETGPPGP 808
Score = 31.2 bits (69), Expect = 0.49
Identities = 33/121 (27%), Positives = 40/121 (33%), Gaps = 13/121 (10%)
Query: 54 AARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPY-------HSARPGG 106
A PG G+ G +R + + G P PAGP PGG
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG 868
Query: 107 GGPCQ-GSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVR 165
G AR P P P P P + PP G + GAP SP G +
Sbjct: 869 PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAG----NTGAP-GSPGVSGPK 923
Query: 166 G 166
G
Sbjct: 924 G 924
Score = 30.4 bits (67), Expect = 0.83
Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 21/125 (16%)
Query: 57 PGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPY----HSARPGGGGPCQG 112
PG G P + P + +P + G P A+ P+GP S RPG G
Sbjct: 185 PGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPG---- 240
Query: 113 SARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAP-----------LASPAP 161
R P P ++ P G G D R + GAP +P P
Sbjct: 241 -ERGLPGPPGIK-GPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP 298
Query: 162 RGVRG 166
G RG
Sbjct: 299 MGPRG 303
Score = 30.4 bits (67), Expect = 0.83
Identities = 33/134 (24%), Positives = 41/134 (30%), Gaps = 25/134 (18%)
Query: 57 PGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLP---------------PALTPAGPYHS 101
PGP G P + P R G P A P GP +
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA 718
Query: 102 ARPGG--GGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASP 159
A G G P + SP P + +P GP D + P G P+ P
Sbjct: 719 AGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTG--------PIGPP 770
Query: 160 APRGVRGVETPGRA 173
P G G + G A
Sbjct: 771 GPAGQPGDKGEGGA 784
Score = 29.3 bits (64), Expect = 1.8
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 54 AARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQG 112
+ PGP+G P R +R S P + G P GP PG GPC G
Sbjct: 1154 SGHPGPIGPPGPRGNRGERGSEGSPGHPGQPG---------PPGP-----PGAPGPCCG 1198
Score = 27.7 bits (60), Expect = 5.4
Identities = 34/114 (29%), Positives = 40/114 (35%), Gaps = 32/114 (28%)
Query: 54 AARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGS 113
A PGP G PP GP GT P +P P + PG G S
Sbjct: 170 AGYPGPAG-PPGPPGPP--------------GTSGHPG--SPGSPGYQGPPGEPGQAGPS 212
Query: 114 ARFSPDPAAVRPQ-PRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRG 166
P P A+ P P G +SG R P RG P P G++G
Sbjct: 213 GPPGP-PGAIGPSGPAGKDGESG--RPGRPGERGL-----------PGPPGIKG 252
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 42.0 bits (97), Expect = 3e-04
Identities = 37/116 (31%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 57 PGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARF 116
PGP G P R GP +R G R P P G A P G +G
Sbjct: 415 PGPDGAPGERGGPGER------------GPRGTPGTRGPRGDPGEAGPQGDQGREGPVGV 462
Query: 117 SPDPAAVRP-QPRGPQPDSGSARQVPPDSRGAQ-ALHRGAPLASPAPRGVRGVETP 170
DP P P+G + D G PP S GA+ A P P G RG + P
Sbjct: 463 PGDPGEAGPIGPKGYRGDEG-----PPGSEGARGAPGPAGPPGDPGLMGERGEDGP 513
Score = 28.5 bits (62), Expect = 3.1
Identities = 29/94 (30%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 95 PAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGA 154
P GP PG G D A RP GP D G + P +A G
Sbjct: 357 PPGP--KGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGN 414
Query: 155 P--------LASPAPRGVRGVETPG----RADSG 176
P P RG RG TPG R D G
Sbjct: 415 PGPDGAPGERGGPGERGPRG--TPGTRGPRGDPG 446
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 42.0 bits (97), Expect = 3e-04
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 105 GGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGV 164
GGGGP G + S A R P P P SGS+ + P + + HRG + PRG
Sbjct: 19 GGGGPRSGRSSGSSSGPARRSSP--PPPPSGSSSRTPARRPRSPSGHRGRRASPSPPRGR 76
Query: 165 RGVETPGRADSG 176
R +P RA G
Sbjct: 77 RVSPSPPRARRG 88
Score = 33.9 bits (76), Expect = 0.075
Identities = 31/106 (29%), Positives = 41/106 (38%), Gaps = 24/106 (22%)
Query: 58 GPLGR---PPTRAGPAQRSSCTQPHRRRRRGTRRLPPA------LTPAGPYHSARPGGGG 108
GP R PP +G + R+ +P RR P+ ++P+ P AR G
Sbjct: 34 GPARRSSPPPPPSGSSSRTPARRPRSPSGHRGRRASPSPPRGRRVSPSPP--RARRGSPS 91
Query: 109 PCQGSARFSPDPAAVRPQPRGPQ-------------PDSGSARQVP 141
P +G F P PA R RG DSGS R+ P
Sbjct: 92 PPRGRRLFPPGPAGFRGSSRGESRADYARDGRGDHPGDSGSRRRSP 137
Score = 31.6 bits (70), Expect = 0.37
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 26/101 (25%)
Query: 67 AGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPY-HSARPGGGGPCQGSARFSPDPAAVRP 125
+GPA+RSS P G+ PA P P H R P +G R SP P R
Sbjct: 33 SGPARRSSPPPPPS----GSSSRTPARRPRSPSGHRGRRASPSPPRGR-RVSPSPPRAR- 86
Query: 126 QPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRG 166
RG+ + RG L P P G RG
Sbjct: 87 -------------------RGSPSPPRGRRLFPPGPAGFRG 108
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 42.0 bits (97), Expect = 3e-04
Identities = 45/152 (29%), Positives = 54/152 (35%), Gaps = 25/152 (16%)
Query: 28 RPDEHA---QRHVVHRGDAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRR- 83
RP E A +RH +D A+ P P P A P R+ +P RR R
Sbjct: 38 RPAEPAPFNKRHCRSFDFLEALDGPAMETLPEPPP----PESAVPRARTREAEPRRRARS 93
Query: 84 RGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGP------------- 130
+ R PP LTPA P G Q +AR P R +P P
Sbjct: 94 KSAPRAPPGLTPAPASPPVLPRRGREAQRAARAEASP---RREPAYPALRALANELHPIK 150
Query: 131 -QPDSGSARQVPPDSRGAQALHRGAPLASPAP 161
QP G +V P A P A PAP
Sbjct: 151 LQPQRGGPGRVAPLCAAAGRCAPPEPPAGPAP 182
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 41.6 bits (96), Expect = 4e-04
Identities = 47/145 (32%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 40 RGDAARVDAAALR-AAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAG- 97
RG ++ A +LR + A+P P GR R R RRRRRG R A G
Sbjct: 188 RGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLR-------RRRRRGERAAAAAEFGLGG 240
Query: 98 --------PYHSARPGGGGPCQGSARFSP-DPAAV-------RPQPRGPQPDSGSARQVP 141
H ARP G + R P DPA V RP P P P G+ R
Sbjct: 241 RTCVWQGAAQHRARPAG---LARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAE 297
Query: 142 PDSRGAQALHRGAP---LASPAPRG 163
+ A L + P + SP PRG
Sbjct: 298 ATAPAALGLVQPRPKSDIDSPPPRG 322
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 41.6 bits (96), Expect = 4e-04
Identities = 47/145 (32%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 40 RGDAARVDAAALR-AAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAG- 97
RG ++ A +LR + A+P P GR R R RRRRRG R A G
Sbjct: 188 RGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLR-------RRRRRGERAAAAAEFGLGG 240
Query: 98 --------PYHSARPGGGGPCQGSARFSP-DPAAV-------RPQPRGPQPDSGSARQVP 141
H ARP G + R P DPA V RP P P P G+ R
Sbjct: 241 RTCVWQGAAQHRARPAG---LARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAE 297
Query: 142 PDSRGAQALHRGAP---LASPAPRG 163
+ A L + P + SP PRG
Sbjct: 298 ATAPAALGLVQPRPKSDIDSPPPRG 322
>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
sapiens]
Length = 344
Score = 41.6 bits (96), Expect = 4e-04
Identities = 47/145 (32%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 40 RGDAARVDAAALR-AAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAG- 97
RG ++ A +LR + A+P P GR R R RRRRRG R A G
Sbjct: 188 RGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLR-------RRRRRGERAAAAAEFGLGG 240
Query: 98 --------PYHSARPGGGGPCQGSARFSP-DPAAV-------RPQPRGPQPDSGSARQVP 141
H ARP G + R P DPA V RP P P P G+ R
Sbjct: 241 RTCVWQGAAQHRARPAG---LARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAE 297
Query: 142 PDSRGAQALHRGAP---LASPAPRG 163
+ A L + P + SP PRG
Sbjct: 298 ATAPAALGLVQPRPKSDIDSPPPRG 322
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 41.6 bits (96), Expect = 4e-04
Identities = 41/140 (29%), Positives = 54/140 (38%), Gaps = 15/140 (10%)
Query: 27 QRPDEHAQRHVVHRGDAARVDAAALRAAARPG--PLGRPPTRAGPAQRSSCTQPHRRRRR 84
++ DE + +GD +A A G L PPT AG S + +
Sbjct: 197 EKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPP 256
Query: 85 GTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPA----AVRPQPRGPQPDSGSARQV 140
RL GP + P GP +AR + DPA A P P GP P +G +V
Sbjct: 257 SEGRLDAL---QGPPRTGGPSPAGPA--AARLAEDPAPHYPAGAPAP-GPHPAAG---EV 307
Query: 141 PPDSRGAQALHRGAPLASPA 160
PP G +H P PA
Sbjct: 308 PPGPGGPSVIHSPPPPPPPA 327
Score = 27.7 bits (60), Expect = 5.4
Identities = 33/114 (28%), Positives = 38/114 (33%), Gaps = 22/114 (19%)
Query: 64 PTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPAAV 123
P+ AGPA P G PA P PG GGP + P P AV
Sbjct: 273 PSPAGPAAARLAEDPAPHYPAGA----PAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAV 328
Query: 124 RPQPR----------------GPQPDSGSARQVPPDSRGAQALHRGAPLASPAP 161
+P+ G + GS P QAL G ASPAP
Sbjct: 329 LAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQAL--GGSRASPAP 380
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 41.2 bits (95), Expect = 5e-04
Identities = 58/178 (32%), Positives = 65/178 (36%), Gaps = 32/178 (17%)
Query: 9 HPDRVHEALHLGGVQHGRQ---RPDEH--AQRHVV---------HRGDAARVDAAALRAA 54
HP +V + L L G + R EH Q H V HR AR+ A A
Sbjct: 24 HPAQVEKRLTLEVKMKGLKKVWRHQEHNGEQHHDVDKGQVTGGQHRRAVARLPAEPAHAV 83
Query: 55 ARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLP--PALTPA---GPYHSARPGGGGP 109
P RP R R R+R R P PA TPA G + PG P
Sbjct: 84 PHPV---RPAARLRAPARDPVPLAGRQRAGAAPRGPGGPARTPAVRAGRRAADGPGEEAP 140
Query: 110 CQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGA-PLASPAPRGVRG 166
G ARFS QPRGPQP + V P GA GA P P RG
Sbjct: 141 APGRARFSG-----LSQPRGPQPRAA----VRPRRGGALPRGTGAVPERGPGTEPQRG 189
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 41.2 bits (95), Expect = 5e-04
Identities = 37/127 (29%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
Query: 39 HRGDAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGP 98
H GD V A+L A G GR PA+ + + + + + LPP L PA
Sbjct: 145 HGGDGRGVARASLGDKAGAGRAGRGRPAQSPAEADAAARASKSLKLLSSALPPHLRPAAK 204
Query: 99 YHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLAS 158
+ GP P A+R GP+P G R P SR H GA
Sbjct: 205 TRAV----AGPTA-----KESPPALRTVGDGPRP--GPKRPDPAPSRLPPPPHAGALRGP 253
Query: 159 PAPRGVR 165
P P +R
Sbjct: 254 PLPHRLR 260
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 40.8 bits (94), Expect = 6e-04
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 52 RAAARPGPLGRPPTRA------------GPAQRSSCTQPHRRRRRGTRRLPPALTPAGPY 99
RAA R P G P +A GP+Q+ P R + AG
Sbjct: 108 RAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ--VMTPQGRGTVAAAAAAATASIAGAP 165
Query: 100 HSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASP 159
PG GGP R +P P + P P G +P G +PP RG + P P
Sbjct: 166 TQYPPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPP-GRGT-PMGMPPPGMRP 222
Query: 160 APRGVRGVETPG 171
P G+RG PG
Sbjct: 223 PPPGMRGPPPPG 234
Score = 32.0 bits (71), Expect = 0.28
Identities = 32/97 (32%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 40 RGDAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPAL-TPAGP 98
RG A AAA A+ P PP R GP P G PP + P GP
Sbjct: 147 RGTVAAA-AAAATASIAGAPTQYPPGRGGPPPPMGRGAP----PPGMMGPPPGMRPPMGP 201
Query: 99 YHSARPGGGGPCQGSARFSPDPAAVRPQP---RGPQP 132
PG G P P +RP P RGP P
Sbjct: 202 PMGIPPGRGTP------MGMPPPGMRPPPPGMRGPPP 232
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 40.4 bits (93), Expect = 8e-04
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 66 RAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRP 125
R+GPA + P P P GP ++ PG GP SP PA P
Sbjct: 44 RSGPASAQTPVPPQ-----------PPQPPPGPASASGPGAAGPAS-----SPPPAGPGP 87
Query: 126 QPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRG 166
P P R PDS GA G P A+PA G G
Sbjct: 88 GPALPAVRLSLVRLGEPDSAGA-----GEPPATPAGLGSGG 123
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 53 AAARPGPLGRPPTRAGPAQR--SSCTQPHRRRRRGTRRLPPALTPAGPYHSA-------- 102
++A P PPT + Q SS P T PPA TPA P SA
Sbjct: 182 SSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT---PPATTPAPPSSSAPPETTAAP 238
Query: 103 -RPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGA---QALHRGAPLAS 158
P P S+ P+ AV P P D SA PP++ A + AP +S
Sbjct: 239 PTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSA-SAPPETTAAPPTPSATTPAPPSS 297
Query: 159 PAPR 162
PAP+
Sbjct: 298 PAPQ 301
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 53 AAARPGPLGRPPTRAGPAQR--SSCTQPHRRRRRGTRRLPPALTPAGPYHSA-------- 102
++A P PPT + Q SS P T PPA TPA P SA
Sbjct: 182 SSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT---PPATTPAPPSSSAPPETTAAP 238
Query: 103 -RPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGA---QALHRGAPLAS 158
P P S+ P+ AV P P D SA PP++ A + AP +S
Sbjct: 239 PTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSA-SAPPETTAAPPTPSATTPAPPSS 297
Query: 159 PAPR 162
PAP+
Sbjct: 298 PAPQ 301
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 53 AAARPGPLGRPPTRAGPAQR--SSCTQPHRRRRRGTRRLPPALTPAGPYHSA-------- 102
++A P PPT + Q SS P T PPA TPA P SA
Sbjct: 182 SSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT---PPATTPAPPSSSAPPETTAAP 238
Query: 103 -RPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGA---QALHRGAPLAS 158
P P S+ P+ AV P P D SA PP++ A + AP +S
Sbjct: 239 PTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSA-SAPPETTAAPPTPSATTPAPPSS 297
Query: 159 PAPR 162
PAP+
Sbjct: 298 PAPQ 301
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 40.0 bits (92), Expect = 0.001
Identities = 49/170 (28%), Positives = 64/170 (37%), Gaps = 25/170 (14%)
Query: 20 GGVQHGRQRPDE----HAQRHVVHRGDAARVDAAALRA-AARPGPLGRP-PTRAGPAQRS 73
G +GR P E +A GDA+ + A AA P P PT G A
Sbjct: 142 GSSSYGRLGPSEPRGIYASERPKSLGDASPSAPEVVGARAAVPRSFSAPYPTAGGSAGPE 201
Query: 74 SCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDP-AAVRPQP----- 127
+C+ RR R G P LTP+ P H+ PC SPD A RP
Sbjct: 202 ACSSAERRARAG-----PFLTPS-PLHAVAMRSPRPCGRPPTDSPDAGGAGRPLDGYISA 255
Query: 128 ---RGPQPDSGSARQVPPDSRGA----QALHRGAPLASPAPRGVRGVETP 170
R + +G R P + G ++ + P ASP+P R P
Sbjct: 256 LLRRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDASPSPGSARPAREP 305
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 39.7 bits (91), Expect = 0.001
Identities = 36/156 (23%), Positives = 51/156 (32%), Gaps = 6/156 (3%)
Query: 21 GVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHR 80
G G + P + + HR DA + ++ A G P PA + P
Sbjct: 53 GSPRGAEEPGKKRHERLFHRQDALWISTSS----AGTGGAEPPALSPAPASPARPVSPAP 108
Query: 81 RRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQV 140
RR +PP +G GG P P+ P+P G
Sbjct: 109 GRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSS 168
Query: 141 PPDSRGAQALHRGAPLASPAPRGVRGVETPGRADSG 176
P G++ L P PAP+ + V T G G
Sbjct: 169 PHPGTGSRRLKVAPP--PPAPKPCKTVTTSGAKAGG 202
Score = 28.1 bits (61), Expect = 4.1
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 63 PPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYH------SARPGGGGPCQGSARF 116
P RAG S + PH G+RRL A P P S GGG GS R
Sbjct: 155 PEGRAGGGIPGS-SSPHPGT--GSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAGS-RL 210
Query: 117 SPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASP----APRGVRGVETPGR 172
S + +P+ +G + +G+ V + A A G+ ++ A G RG +P +
Sbjct: 211 SWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAGAGARGKLSPRK 270
Query: 173 ADS 175
S
Sbjct: 271 GKS 273
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.7 bits (91), Expect = 0.001
Identities = 48/158 (30%), Positives = 58/158 (36%), Gaps = 19/158 (12%)
Query: 21 GVQHGRQRPDEHAQRHVVHRG---DAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQ 77
G QRP R+ RG A R + + A R R P R G RS
Sbjct: 532 GRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRG---RSRSRT 588
Query: 78 PHRRRRRG---TRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDS 134
P RRR R TRR + TPA R P + +R + P R + R P S
Sbjct: 589 PARRRSRSRTPTRRRSRSRTPA---RRGRSRSRTPARRRSR-TRSPVRRRSRSRSPARRS 644
Query: 135 GSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETPGR 172
G +R P RG +PA RG TP R
Sbjct: 645 GRSRSRTPARRGRSRSR------TPARRGRSRSRTPAR 676
Score = 32.0 bits (71), Expect = 0.28
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 23/127 (18%)
Query: 59 PLGRPPTRAGPAQRSSCTQPHRRRRRG--------TRRLPPALTPAG--PYHSARPGGGG 108
P R + + P ++ P R+R R RL P + +G P +P
Sbjct: 1553 PQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAP 1612
Query: 109 PCQGSARFSPDPAAVRPQP-------------RGPQPDSGSARQVPPDSRGAQALHRGAP 155
Q + SP+P A P+ RGP P+ S+ + P+ R
Sbjct: 1613 RAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGS 1672
Query: 156 LASPAPR 162
+SP P+
Sbjct: 1673 RSSPEPK 1679
Score = 28.5 bits (62), Expect = 3.1
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Query: 69 PAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPR 128
P QR + T+ H+ ++ G S G Q AR + PA P+P
Sbjct: 112 PGQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPY 171
Query: 129 GPQPDSGSARQ-VPPDSRGAQALHRGAPLASPAPRGVR 165
+S S+R P + + RG S +PR R
Sbjct: 172 SLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRER 209
Score = 28.5 bits (62), Expect = 3.1
Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 23/120 (19%)
Query: 63 PPTRAGPAQRSSCTQPHRRRR---------RGTRRLPPALTPAGPYHSARPGGGGPCQGS 113
P R QR+S + H + R GT R PP+++ AG +
Sbjct: 2160 PGPRIPDHQRTSVPENHAQSRIALALTAISLGTARPPPSMSAAGL--------------A 2205
Query: 114 ARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETPGRA 173
AR S PA V P + A ++P S A L A P + TP A
Sbjct: 2206 ARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTPAIPTAVNLADSRTPAAA 2265
Score = 27.7 bits (60), Expect = 5.4
Identities = 34/127 (26%), Positives = 45/127 (35%), Gaps = 14/127 (11%)
Query: 23 QHGRQRPDEHAQRHV-----VHRGDAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQ 77
+ GR R A+R R +R A R+ +R R TR+ +RS
Sbjct: 580 RRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRS 639
Query: 78 PHRRRRRGTRRLPP------ALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQ 131
P RR R R P + TPA R P + S R A R + R
Sbjct: 640 PARRSGRSRSRTPARRGRSRSRTPA---RRGRSRSRTPARRSGRSRSRTPARRGRSRSRT 696
Query: 132 PDSGSAR 138
P G +R
Sbjct: 697 PRRGRSR 703
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/145 (34%), Positives = 58/145 (40%), Gaps = 38/145 (26%)
Query: 41 GDAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYH 100
G+AAR + L A RPGP R A ++ G RR P ALTP GP H
Sbjct: 3 GEAARAELL-LPEADRPGP--RTDLSCDAAAATTILG-------GDRREPCALTP-GPSH 51
Query: 101 SARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSG-----SARQVP----------PDSR 145
A F P RPQP G D+G SA P P+
Sbjct: 52 LA-----------LTFLPSKPGARPQPEGASWDAGPGGAPSAWADPGEGGPSPMLLPEGL 100
Query: 146 GAQALHRGAPL-ASPAPRGVRGVET 169
+QAL APL A+ PR V G ET
Sbjct: 101 SSQALSTEAPLPATLEPRIVMGEET 125
Score = 27.7 bits (60), Expect = 5.4
Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 57 PGPLGRPPTRAG----PAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQG 112
PG LG PP +AG A S TQP R +L+P P S +
Sbjct: 1265 PGSLGLPPPQAGVQPAAAAVSGTTQPLGTGPR------VSLSPHSPLLSPKVASMDAKDL 1318
Query: 113 SARFSPDPAAVRPQPRGPQPDSG-SARQVPPDSRGAQALHRGAPLA 157
+ + P P V P P GPQ +G P +L +P A
Sbjct: 1319 ALQILP-PCQV-PPPSGPQSPAGPQGLSAPEQQEDEDSLEEDSPRA 1362
Score = 27.3 bits (59), Expect = 7.0
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 126 QPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPA--PRGVRGVETP 170
Q GP+ G AR+VP A A L SPA RG+ G TP
Sbjct: 1089 QEHGPRSALGGAREVPDAPPAACPEVSQARLLSPAREERGLSGKSTP 1135
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,655,281
Number of Sequences: 37866
Number of extensions: 751477
Number of successful extensions: 6847
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 1129
Number of HSP's that attempted gapping in prelim test: 4995
Number of HSP's gapped (non-prelim): 2671
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.