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Search of human proteins with 239757103
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens] 374 e-104
gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ... 217 5e-57
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ... 217 5e-57
gi|5032161 elongin C [Homo sapiens] 125 3e-29
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens] 113 8e-26
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens] 113 8e-26
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens] 113 8e-26
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens] 86 1e-17
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens] 86 1e-17
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ... 84 5e-17
gi|113430993 PREDICTED: similar to elongin C [Homo sapiens] 60 1e-09
gi|195222730 F-box only protein 34 [Homo sapiens] 32 0.23
gi|40807493 F-box only protein 34 [Homo sapiens] 32 0.23
gi|22749259 poly (ADP-ribose) polymerase family, member 15 isofo... 29 2.5
gi|165377137 poly (ADP-ribose) polymerase family, member 15 isof... 29 2.5
gi|65508004 Wilms tumor 1 isoform D [Homo sapiens] 28 4.3
gi|65507817 Wilms tumor 1 isoform B [Homo sapiens] 28 4.3
gi|163644325 MCF.2 cell line derived transforming sequence-like ... 28 4.3
gi|68299799 Purkinje cell protein 2 [Homo sapiens] 28 4.3
gi|18104993 protein tyrosine phosphatase, non-receptor type 6 is... 28 5.6
gi|7657540 schwannomin interacting protein 1 [Homo sapiens] 27 7.3
>gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
Length = 181
Score = 374 bits (960), Expect = e-104
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
Query: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLTALEVLMIQHFLQGAGEELPADR 120
NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLTALEVLMIQHFLQGAGEELPADR
Sbjct: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLTALEVLMIQHFLQGAGEELPADR 120
Query: 121 NALCRSSRFCQLLPSLQGNAGRSVASHRRTDGQQGSPTGPRSTNHYAIVTACATFRGVLG 180
NALCRSSRFCQLLPSLQGNAGRSVASHRRTDGQQGSPTGPRSTNHYAIVTACATFRGVLG
Sbjct: 121 NALCRSSRFCQLLPSLQGNAGRSVASHRRTDGQQGSPTGPRSTNHYAIVTACATFRGVLG 180
Query: 181 I 181
I
Sbjct: 181 I 181
>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
sapiens]
Length = 120
Score = 217 bits (552), Expect = 5e-57
Identities = 105/109 (96%), Positives = 105/109 (96%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
Query: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLTALEVLMIQHFL 109
NFREIPPRCYPKHAKACIYFT KVHYSNSSTEIPEFLTALEVLM FL
Sbjct: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFL 109
>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
sapiens]
Length = 120
Score = 217 bits (552), Expect = 5e-57
Identities = 105/109 (96%), Positives = 105/109 (96%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
Query: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLTALEVLMIQHFL 109
NFREIPPRCYPKHAKACIYFT KVHYSNSSTEIPEFLTALEVLM FL
Sbjct: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFL 109
>gi|5032161 elongin C [Homo sapiens]
Length = 112
Score = 125 bits (313), Expect = 3e-29
Identities = 69/113 (61%), Positives = 81/113 (71%), Gaps = 7/113 (6%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
M+GEEK+ G GPDAM KL+SSD +FIVKREH SG KA+LSGPGQ AENET++V
Sbjct: 1 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
Query: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF----LTALEVLMIQHFL 109
NFREIP +K C+YFT KV Y+NSSTEIPEF ALE+LM +FL
Sbjct: 61 NFREIPSHVL---SKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110
>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 113 bits (283), Expect = 8e-26
Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
M+GE+K+ G GPDA+ KL+ SD +FIVK+E SG KA+LSGPGQ AENE D+V
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
Query: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLT----ALEVLMIQHFL 109
+FREIP K C+YF KV Y+NSSTEIPEF ALE+LM +FL
Sbjct: 61 HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFL 113
>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 113 bits (283), Expect = 8e-26
Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
M+GE+K+ G GPDA+ KL+ SD +FIVK+E SG KA+LSGPGQ AENE D+V
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
Query: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLT----ALEVLMIQHFL 109
+FREIP K C+YF KV Y+NSSTEIPEF ALE+LM +FL
Sbjct: 61 HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFL 113
>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 113 bits (283), Expect = 8e-26
Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
M+GE+K+ G GPDA+ KL+ SD +FIVK+E SG KA+LSGPGQ AENE D+V
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
Query: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLT----ALEVLMIQHFL 109
+FREIP K C+YF KV Y+NSSTEIPEF ALE+LM +FL
Sbjct: 61 HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFL 113
>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 86.3 bits (212), Expect = 1e-17
Identities = 54/112 (48%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Query: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
Query: 62 FREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF----LTALEVLMIQHFL 109
FREI +K C+Y T K HY+NSSTEI +F A E+LM +FL
Sbjct: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQLAPELLMTVNFL 267
>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 86.3 bits (212), Expect = 1e-17
Identities = 54/112 (48%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Query: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
Query: 62 FREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF----LTALEVLMIQHFL 109
FREI +K C+Y T K HY+NSSTEI +F A E+LM +FL
Sbjct: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFL 267
>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
sapiens]
Length = 287
Score = 84.3 bits (207), Expect = 5e-17
Identities = 53/112 (47%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
Query: 62 FREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF----LTALEVLMIQHFL 109
FREI +K C+Y T HY+NSSTEI +F A E+LM +FL
Sbjct: 237 FREISSHVL---SKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFL 285
>gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
Length = 101
Score = 59.7 bits (143), Expect = 1e-09
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 1 MNGEEKSCSGYGGPDAM--DGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETD 58
M+ EEK+ S + M +G L+S + F+VK + S K +L+GP AE T
Sbjct: 1 MDEEEKTYSVCESSNTMMSNGYLLSPE---FLVKIRTAQTSATMKPLLTGPDHFAEKGTI 57
Query: 59 QVNFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF 96
+VN R+ P + P KAC YFT HY+ SSTEIP+F
Sbjct: 58 EVNLRDNPSQVLP---KACKYFTYIFHYTYSSTEIPKF 92
>gi|195222730 F-box only protein 34 [Homo sapiens]
Length = 711
Score = 32.3 bits (72), Expect = 0.23
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 37 RASGIRKAVLSGPGQSAENETDQVNFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF 96
RA+ RK SG + A+ + +++ RE+ RCY AC C VHY + S +
Sbjct: 146 RATKRRKK--SGDLKKAKVQVERM--REVNSRCYQPEPFACGIEHCSVHYVSDSGDGVYA 201
Query: 97 LTALEVLMIQHFLQGAGEELPADRNALCRSS 127
L V+ + FL+ L A + C +S
Sbjct: 202 GRPLSVIQMVAFLEQRASALLASCSKNCTNS 232
>gi|40807493 F-box only protein 34 [Homo sapiens]
Length = 711
Score = 32.3 bits (72), Expect = 0.23
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 37 RASGIRKAVLSGPGQSAENETDQVNFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF 96
RA+ RK SG + A+ + +++ RE+ RCY AC C VHY + S +
Sbjct: 146 RATKRRKK--SGDLKKAKVQVERM--REVNSRCYQPEPFACGIEHCSVHYVSDSGDGVYA 201
Query: 97 LTALEVLMIQHFLQGAGEELPADRNALCRSS 127
L V+ + FL+ L A + C +S
Sbjct: 202 GRPLSVIQMVAFLEQRASALLASCSKNCTNS 232
>gi|22749259 poly (ADP-ribose) polymerase family, member 15 isoform
2 [Homo sapiens]
Length = 444
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 22 VSSDDDDFIVK---REHTRASGIRKAVLSGPGQSAENE 56
++++ D IV R R SG+ +A+L G GQ+ E+E
Sbjct: 79 IATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESE 116
>gi|165377137 poly (ADP-ribose) polymerase family, member 15 isoform
1 [Homo sapiens]
Length = 678
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 22 VSSDDDDFIVK---REHTRASGIRKAVLSGPGQSAENE 56
++++ D IV R R SG+ +A+L G GQ+ E+E
Sbjct: 313 IATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESE 350
>gi|65508004 Wilms tumor 1 isoform D [Homo sapiens]
Length = 517
Score = 28.1 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 124 CRSSRFCQLLPSLQGNAGRSVASHRRTDGQQGSPTGPRSTNHYAIVTACATFR 176
C + L +L+G A S +S + T+GQ TG S NH + A +R
Sbjct: 303 CMTWNQMNLGATLKGVAAGSSSSVKWTEGQSNHSTGYESDNHTTPILCGAQYR 355
>gi|65507817 Wilms tumor 1 isoform B [Homo sapiens]
Length = 514
Score = 28.1 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 124 CRSSRFCQLLPSLQGNAGRSVASHRRTDGQQGSPTGPRSTNHYAIVTACATFR 176
C + L +L+G A S +S + T+GQ TG S NH + A +R
Sbjct: 303 CMTWNQMNLGATLKGVAAGSSSSVKWTEGQSNHSTGYESDNHTTPILCGAQYR 355
>gi|163644325 MCF.2 cell line derived transforming sequence-like
isoform a [Homo sapiens]
Length = 1182
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 116 LPADRNALCRSSRFCQLLPSLQGNAGRSVASHRRTDGQQGSPTGPRS 162
+PA R +L S Q +P L+G AG S ASH T G P+ PR+
Sbjct: 8 VPAARASLTGSCVLGQAMP-LRGGAGPSPASHGPTHG----PSDPRT 49
>gi|68299799 Purkinje cell protein 2 [Homo sapiens]
Length = 136
Score = 28.1 bits (61), Expect = 4.3
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHT---RASGIRKAVLSGPGQSAENET 57
M+ EEK+ G GP A G S D + F H R G R ++ +GPGQ+ ++++
Sbjct: 2 MDQEEKTEEG-SGPCAEAG---SPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQS 57
Query: 58 D 58
D
Sbjct: 58 D 58
>gi|18104993 protein tyrosine phosphatase, non-receptor type 6
isoform 3 [Homo sapiens]
Length = 624
Score = 27.7 bits (60), Expect = 5.6
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 117 PADRNALCRSSRFCQLLPSLQGNAGRSVASHRRTDGQQGSPT-GP 160
PA +NA ++SR SL+ +AG AS R GQ+G P GP
Sbjct: 543 PAMKNAHAKASRTSS--KSLESSAGTVAASPVRRGGQRGLPVPGP 585
>gi|7657540 schwannomin interacting protein 1 [Homo sapiens]
Length = 487
Score = 27.3 bits (59), Expect = 7.3
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 6 KSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVNFREI 65
K S Y D + + S DD DF+ +++ +A ++ P + E ++ N ++
Sbjct: 334 KQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKS 393
Query: 66 P 66
P
Sbjct: 394 P 394
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,976,079
Number of Sequences: 37866
Number of extensions: 342200
Number of successful extensions: 911
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 21
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.