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Search of human proteins with 239757101
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757101 PREDICTED: hypothetical protein [Homo sapiens]
(309 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757101 PREDICTED: hypothetical protein [Homo sapiens] 654 0.0
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 41 0.001
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 41 0.001
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 41 0.001
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 41 0.001
gi|156416026 zinc finger protein 219 [Homo sapiens] 41 0.002
gi|156415998 zinc finger protein 219 [Homo sapiens] 41 0.002
gi|156415996 zinc finger protein 219 [Homo sapiens] 41 0.002
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 39 0.006
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 39 0.008
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.008
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 38 0.010
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 38 0.010
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 38 0.010
gi|239756083 PREDICTED: hypothetical protein [Homo sapiens] 37 0.029
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 37 0.029
gi|239750612 PREDICTED: hypothetical protein [Homo sapiens] 37 0.029
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 37 0.029
gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo ... 37 0.029
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 37 0.029
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 37 0.029
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 37 0.029
gi|239744384 PREDICTED: hypothetical protein XP_002343133 [Homo ... 36 0.038
gi|163965366 nascent polypeptide-associated complex alpha subuni... 36 0.038
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 35 0.065
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 35 0.065
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 35 0.084
gi|239750075 PREDICTED: hypothetical protein [Homo sapiens] 35 0.084
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 35 0.084
gi|150170670 piccolo isoform 2 [Homo sapiens] 35 0.084
>gi|239757101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 309
Score = 654 bits (1687), Expect = 0.0
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MSPGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTE 60
MSPGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTE
Sbjct: 1 MSPGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTE 60
Query: 61 DYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGR 120
DYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGR
Sbjct: 61 DYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGR 120
Query: 121 GRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHEDRCMIG 180
GRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHEDRCMIG
Sbjct: 121 GRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHEDRCMIG 180
Query: 181 FWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCRPRPAVNAMARR 240
FWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCRPRPAVNAMARR
Sbjct: 181 FWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCRPRPAVNAMARR 240
Query: 241 RRVFPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPGSGVKTRPGGHAIPM 300
RRVFPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPGSGVKTRPGGHAIPM
Sbjct: 241 RRVFPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPGSGVKTRPGGHAIPM 300
Query: 301 LAHTRCVAA 309
LAHTRCVAA
Sbjct: 301 LAHTRCVAA 309
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 41.2 bits (95), Expect = 0.001
Identities = 76/310 (24%), Positives = 94/310 (30%), Gaps = 58/310 (18%)
Query: 10 PEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTED----YNSH 65
P+ PK +P PP + P R + G PG P ES TG ++ Y+S+
Sbjct: 104 PQGPKGDPGPPGI-----PGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSY 158
Query: 66 TTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGRGRSLC 125
A+ G AG P PGP G PGS G+
Sbjct: 159 DVKSGVAVGGLAGYPGPAGPPGPP------------GPPGTSGHPGSPGSPGYQGPPGEP 206
Query: 126 THALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHEDRCMIGFWRLA 185
A P P P A P PG L P
Sbjct: 207 GQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPP------------------ 248
Query: 186 EGIPGAGKAPYQPPDWEHSGVASRRKCFGR--SPGRR--DAVTGERCRPRPAVNAMARRR 241
GI G P P H G R G +PG + + + GE P P A
Sbjct: 249 -GIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGE 307
Query: 242 RVFPS-PALLALHSQELNCGKT-------PPNKVNGPRNPAGALPERESGSPGS----GV 289
R P P + G PP P +P +GSPGS G
Sbjct: 308 RGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ 367
Query: 290 KTRPG--GHA 297
+ PG GHA
Sbjct: 368 RGEPGPQGHA 377
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 41.2 bits (95), Expect = 0.001
Identities = 51/194 (26%), Positives = 70/194 (36%), Gaps = 24/194 (12%)
Query: 3 PGSSFPLPEPPKSEPKPPSMA-----PQSQPDRGRVRRLVTNCAGSGPPGAPRETESART 57
P + PL + P S P P++ P PD +T GPP P + S+
Sbjct: 564 PVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTL 623
Query: 58 GTED---YNSHTTARARAIQGRAGGP---PLMRRPGPAVTYTSYPWLRLRGKREALTWPG 111
D ++S T+ ++G GP P A +P RG L + G
Sbjct: 624 SGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRG 683
Query: 112 SRG-------ATTCGRGRSLC----THALPPARPEGPAAHAHEAPGASIQRVAAGAEPGR 160
+ G AT G LC T A P A +PG S + AAGA G
Sbjct: 684 APGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAG- 742
Query: 161 ITLQTNPSQSRWHE 174
+P Q+R E
Sbjct: 743 -ASSRSPKQARLGE 755
Score = 35.4 bits (80), Expect = 0.065
Identities = 67/247 (27%), Positives = 78/247 (31%), Gaps = 51/247 (20%)
Query: 68 ARARAIQGRAGG-----PPLMRRPGPAVTYTSYPWLRLRG----KREALTWPGSRGATT- 117
A AR RA G PP RP P VT + L G K A G GAT
Sbjct: 12 AAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIP 71
Query: 118 -----CGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRW 172
G RS T + PA + AP A + PGR + T P
Sbjct: 72 ESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLG- 130
Query: 173 HEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCRPRP 232
G AE GKA + P +RR G +PG P P
Sbjct: 131 -----QKGLRISAEETVARGKAT-EAPKRSALSAGARRDTSGPTPG----------TPSP 174
Query: 233 AVNAMARRRRV------FPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPG 286
AMARR R P PA A P GPR + E + P
Sbjct: 175 ---AMARRSRAAGTEVGLPRPAPSA----------RPRPPTEGPRKSVSSASEHSTTEPS 221
Query: 287 SGVKTRP 293
+ RP
Sbjct: 222 PAARRRP 228
Score = 30.0 bits (66), Expect = 2.7
Identities = 67/269 (24%), Positives = 90/269 (33%), Gaps = 63/269 (23%)
Query: 8 PLPEPPKS---EPKPP----SMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTE 60
P PP S E PP S P S P R +G+ PG P + R E
Sbjct: 90 PASRPPASGRGERAPPAKNTSPGPVSSPGRA---------SGTTRPG-PLGQKGLRISAE 139
Query: 61 DYNSHTTARARAIQG-----------RAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTW 109
+ T AR +A + R P P PA+ S R G L
Sbjct: 140 E----TVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRS----RAAGTEVGLPR 191
Query: 110 PGSRGAT---TCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTN 166
P T G +S+ + + PAA + G +QR A+ + T ++
Sbjct: 192 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251
Query: 167 PSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGE 226
P++S A G P A P QP K G R VT
Sbjct: 252 PARS-----------GPSARGTPRAPAHPSQP------------KPKGLQALRPPQVTPP 288
Query: 227 RCRPRPAVNAMARRRRVFPSPALLALHSQ 255
R PA+ ++ PSP+ AL SQ
Sbjct: 289 RKDAAPALGPLSSSPLATPSPS-AALQSQ 316
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 41.2 bits (95), Expect = 0.001
Identities = 51/194 (26%), Positives = 70/194 (36%), Gaps = 24/194 (12%)
Query: 3 PGSSFPLPEPPKSEPKPPSMA-----PQSQPDRGRVRRLVTNCAGSGPPGAPRETESART 57
P + PL + P S P P++ P PD +T GPP P + S+
Sbjct: 833 PVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTL 892
Query: 58 GTED---YNSHTTARARAIQGRAGGP---PLMRRPGPAVTYTSYPWLRLRGKREALTWPG 111
D ++S T+ ++G GP P A +P RG L + G
Sbjct: 893 SGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRG 952
Query: 112 SRG-------ATTCGRGRSLC----THALPPARPEGPAAHAHEAPGASIQRVAAGAEPGR 160
+ G AT G LC T A P A +PG S + AAGA G
Sbjct: 953 APGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAG- 1011
Query: 161 ITLQTNPSQSRWHE 174
+P Q+R E
Sbjct: 1012 -ASSRSPKQARLGE 1024
Score = 35.4 bits (80), Expect = 0.065
Identities = 67/247 (27%), Positives = 78/247 (31%), Gaps = 51/247 (20%)
Query: 68 ARARAIQGRAGG-----PPLMRRPGPAVTYTSYPWLRLRG----KREALTWPGSRGATT- 117
A AR RA G PP RP P VT + L G K A G GAT
Sbjct: 12 AAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIP 71
Query: 118 -----CGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRW 172
G RS T + PA + AP A + PGR + T P
Sbjct: 72 ESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLG- 130
Query: 173 HEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCRPRP 232
G AE GKA + P +RR G +PG P P
Sbjct: 131 -----QKGLRISAEETVARGKAT-EAPKRSALSAGARRDTSGPTPG----------TPSP 174
Query: 233 AVNAMARRRRV------FPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPG 286
AMARR R P PA A P GPR + E + P
Sbjct: 175 ---AMARRSRAAGTEVGLPRPAPSA----------RPRPPTEGPRKSVSSASEHSTTEPS 221
Query: 287 SGVKTRP 293
+ RP
Sbjct: 222 PAARRRP 228
Score = 29.3 bits (64), Expect = 4.6
Identities = 72/299 (24%), Positives = 95/299 (31%), Gaps = 74/299 (24%)
Query: 8 PLPEPPKS---EPKPP----SMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTE 60
P PP S E PP S P S P R +G+ PG P + R E
Sbjct: 90 PASRPPASGRGERAPPAKNTSPGPVSSPGRA---------SGTTRPG-PLGQKGLRISAE 139
Query: 61 DYNSHTTARARAIQG-----------RAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTW 109
+ T AR +A + R P P PA+ S R G L
Sbjct: 140 E----TVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRS----RAAGTEVGLPR 191
Query: 110 PGSRGAT---TCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTN 166
P T G +S+ + + PAA + G +QR A+ + T ++
Sbjct: 192 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251
Query: 167 PSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGE 226
P++S A G P A P QP K G R VT
Sbjct: 252 PARS-----------GPSARGTPRAPAHPSQP------------KPKGLQALRPPQVTPP 288
Query: 227 RCRPRPAVNAMARRRRVFPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSP 285
R PA+ ++ PSP+ T V P N A LP SP
Sbjct: 289 RKDAAPALGPLSSSPLATPSPS------------GTKARPVPPPDNAATPLPATLPPSP 335
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 41.2 bits (95), Expect = 0.001
Identities = 51/194 (26%), Positives = 70/194 (36%), Gaps = 24/194 (12%)
Query: 3 PGSSFPLPEPPKSEPKPPSMA-----PQSQPDRGRVRRLVTNCAGSGPPGAPRETESART 57
P + PL + P S P P++ P PD +T GPP P + S+
Sbjct: 525 PVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTL 584
Query: 58 GTED---YNSHTTARARAIQGRAGGP---PLMRRPGPAVTYTSYPWLRLRGKREALTWPG 111
D ++S T+ ++G GP P A +P RG L + G
Sbjct: 585 SGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRG 644
Query: 112 SRG-------ATTCGRGRSLC----THALPPARPEGPAAHAHEAPGASIQRVAAGAEPGR 160
+ G AT G LC T A P A +PG S + AAGA G
Sbjct: 645 APGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAG- 703
Query: 161 ITLQTNPSQSRWHE 174
+P Q+R E
Sbjct: 704 -ASSRSPKQARLGE 716
Score = 30.8 bits (68), Expect = 1.6
Identities = 63/238 (26%), Positives = 81/238 (34%), Gaps = 42/238 (17%)
Query: 68 ARARAIQGRAGG-----PPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSR--GATTCGR 120
A AR RA G PP RP P VT + LR+ G A+ G + G
Sbjct: 12 AAARTPAARAPGLLTPRPPGSPRPPPPVTPAA---LRVLGAAGAV---GRKPLAERAGGI 65
Query: 121 GRSLCTHALP---PARPEGPAA--HAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHED 175
G + + P P R P A AP A + PGR + T P
Sbjct: 66 GGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQK-- 123
Query: 176 RCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCRPRPAVN 235
G AE GKA + P +RR G +PG P PA
Sbjct: 124 ----GLRISAEETVARGKAT-EAPKRSALSAGARRDTSGPTPGT----------PSPA-- 166
Query: 236 AMARRRRVFPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPGSGVKTRP 293
MARR R + + L + PP + GPR + E + P + RP
Sbjct: 167 -MARRSRAAGTE--VGLPRPAPSARPRPPTE--GPRKSVSSASEHSTTEPSPAARRRP 219
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 40.8 bits (94), Expect = 0.002
Identities = 80/311 (25%), Positives = 112/311 (36%), Gaps = 36/311 (11%)
Query: 13 PKSEPKP---PSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNSHTTAR 69
P P P P+ APQ PD G L G AP T + R + + R
Sbjct: 330 PLRAPGPASGPARAPQP-PDLGL---LAYEPLGPALLLAPAPTPAERREPPSLLGYLSLR 385
Query: 70 ARAIQGRAGGPPLMRRPGPAVTYTSY----PWLRLRGKREALTWPGSRGAT------TCG 119
A +GR G PGP ++ + L R +R P T
Sbjct: 386 AG--EGRPNGEGA--EPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWA 441
Query: 120 RGRSLCTHA-LPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHEDR-- 176
RGRSL + A L P EGP H+ A GA + A E G + T P R +
Sbjct: 442 RGRSLGSLASLHPRPGEGP-GHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDC 500
Query: 177 --CMIGFWRLAEGIP-----GAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCR 229
C F R A + G+ PY+ P +++G S + R+ +G
Sbjct: 501 PFCGKSF-RSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSGAGPG 559
Query: 230 PRPAVNAMARRRRVFPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPGSGV 289
P P ++R S A + G + P P + AG R+ SPG +
Sbjct: 560 PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP---PSSGAGPGSRRKPASPGRTL 616
Query: 290 KTRPGGHAIPM 300
+ GG A P+
Sbjct: 617 RNGRGGEAEPL 627
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 40.8 bits (94), Expect = 0.002
Identities = 80/311 (25%), Positives = 112/311 (36%), Gaps = 36/311 (11%)
Query: 13 PKSEPKP---PSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNSHTTAR 69
P P P P+ APQ PD G L G AP T + R + + R
Sbjct: 330 PLRAPGPASGPARAPQP-PDLGL---LAYEPLGPALLLAPAPTPAERREPPSLLGYLSLR 385
Query: 70 ARAIQGRAGGPPLMRRPGPAVTYTSY----PWLRLRGKREALTWPGSRGAT------TCG 119
A +GR G PGP ++ + L R +R P T
Sbjct: 386 AG--EGRPNGEGA--EPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWA 441
Query: 120 RGRSLCTHA-LPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHEDR-- 176
RGRSL + A L P EGP H+ A GA + A E G + T P R +
Sbjct: 442 RGRSLGSLASLHPRPGEGP-GHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDC 500
Query: 177 --CMIGFWRLAEGIP-----GAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCR 229
C F R A + G+ PY+ P +++G S + R+ +G
Sbjct: 501 PFCGKSF-RSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSGAGPG 559
Query: 230 PRPAVNAMARRRRVFPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPGSGV 289
P P ++R S A + G + P P + AG R+ SPG +
Sbjct: 560 PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP---PSSGAGPGSRRKPASPGRTL 616
Query: 290 KTRPGGHAIPM 300
+ GG A P+
Sbjct: 617 RNGRGGEAEPL 627
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 40.8 bits (94), Expect = 0.002
Identities = 80/311 (25%), Positives = 112/311 (36%), Gaps = 36/311 (11%)
Query: 13 PKSEPKP---PSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNSHTTAR 69
P P P P+ APQ PD G L G AP T + R + + R
Sbjct: 330 PLRAPGPASGPARAPQP-PDLGL---LAYEPLGPALLLAPAPTPAERREPPSLLGYLSLR 385
Query: 70 ARAIQGRAGGPPLMRRPGPAVTYTSY----PWLRLRGKREALTWPGSRGAT------TCG 119
A +GR G PGP ++ + L R +R P T
Sbjct: 386 AG--EGRPNGEGA--EPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWA 441
Query: 120 RGRSLCTHA-LPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHEDR-- 176
RGRSL + A L P EGP H+ A GA + A E G + T P R +
Sbjct: 442 RGRSLGSLASLHPRPGEGP-GHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDC 500
Query: 177 --CMIGFWRLAEGIP-----GAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCR 229
C F R A + G+ PY+ P +++G S + R+ +G
Sbjct: 501 PFCGKSF-RSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSGAGPG 559
Query: 230 PRPAVNAMARRRRVFPSPALLALHSQELNCGKTPPNKVNGPRNPAGALPERESGSPGSGV 289
P P ++R S A + G + P P + AG R+ SPG +
Sbjct: 560 PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP---PSSGAGPGSRRKPASPGRTL 616
Query: 290 KTRPGGHAIPM 300
+ GG A P+
Sbjct: 617 RNGRGGEAEPL 627
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 38.9 bits (89), Expect = 0.006
Identities = 45/167 (26%), Positives = 56/167 (33%), Gaps = 51/167 (30%)
Query: 2 SPGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTED 61
SPG++ P P PP P PP PQ QP PP P
Sbjct: 13 SPGAT-PAPGPP---PPPPPAPPQQQPP---------------PPPPPAPPPGPGPAPPQ 53
Query: 62 YNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATT---- 117
+ PP P P RLR + + PG+ GA +
Sbjct: 54 H-----------------PPRAEALPPEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKG 96
Query: 118 -----CGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPG 159
CGRG C+ PA PEGPA + S + A+G PG
Sbjct: 97 SPNGECGRGEPQCS----PAGPEGPARGPKVS--FSCRGAASGPAPG 137
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 38.5 bits (88), Expect = 0.008
Identities = 75/343 (21%), Positives = 114/343 (33%), Gaps = 75/343 (21%)
Query: 2 SPGSSFPLPEPPKSEPKPPSMAPQ-----------SQPDRGRVRRLVTNCAGSGPPGAPR 50
S G P P P + +P +M P P+ ++ +T+ + GP
Sbjct: 670 SSGVPEPHPGEPVQQRQPFTMQPPVGINSLRGPRLGTPEEKQMCGGLTHLSNMGPHPGSL 729
Query: 51 ETESARTGTEDYNSHTTARARA--IQGRAGGPPLMRRPG--------PAVTYTSYPWLRL 100
+ ++D + + A+ + I R GG P R P P+ Y SY +L
Sbjct: 730 QLGQISGPSQDGSMYAPAQFQPGFIPPRHGGAPA-RPPDFPESSEIPPSHMYRSYKYLN- 787
Query: 101 RGKREALTWPGSRGATTCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGR 160
+ + W G+ GAT G P GP H PG S Q G
Sbjct: 788 --RVHSAVWNGNHGATNQG--------------PLGPDEKPHLGPGPSHQPRTLGHVMDS 831
Query: 161 ITLQTNPSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSG-------VASRRKCF 213
++ ++W E GF L G+P +G Y P + +G V + F
Sbjct: 832 RVMRPPVPPNQWTEQS---GF--LPHGVPSSG---YMRPPCKSAGHRLQPPPVPAPSSLF 883
Query: 214 GR-SPGRRDAVTGERCRPRPAVNAMAR-RRRV----------------FPSPALLALHSQ 255
G + R G+ P + AM + RV P P H
Sbjct: 884 GAPAQALRGVQGGDSMMDSPEMIAMQQLSSRVCPPGVPYHPHQPAHPRLPGPFPQVAHPM 943
Query: 256 ELNCGKTPP---NKVNGPRNPAGALPERESGSPGSGVKTRPGG 295
+ P N P N PE + P G++ +P G
Sbjct: 944 SVTVSAPKPALGNPGRAPENSEAQEPENDQAEPLPGLEEKPPG 986
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.5 bits (88), Expect = 0.008
Identities = 80/319 (25%), Positives = 108/319 (33%), Gaps = 61/319 (19%)
Query: 3 PGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGP--------PGAPRETES 54
P S LP+ SE PPS P V+ A S P PG+ RE S
Sbjct: 406 PKSPEKLPQSSSSESSPPSPQPTK----------VSRHASSSPESPKPAPAPGSHREISS 455
Query: 55 A---------RTGTEDYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKRE 105
+ R + +SHT +R GR+ P +R G + + T P R +
Sbjct: 456 SPTSKNRSHGRAKRDKSHSHTPSRR---MGRSRSPATAKR-GRSRSRT--PTKRGHSRSR 509
Query: 106 ALTWPGSRGATTCGRGRS--LCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITL 163
+ W SR A GR RS + P RP + + G S + G R
Sbjct: 510 SPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRS-RSARRGRSHSRSPA 568
Query: 164 QTNPSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAV 223
S+SR R G ++ S +RR+ R+P RR
Sbjct: 569 TRGRSRSRTPARR-------------GRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRS 615
Query: 224 TGER-CRPRPAVNAMARRRRVFPSPALLALHSQELNCGKTPPNKVNG-PRNPA------G 275
R R + RRR SPA + S+ +TP + R PA
Sbjct: 616 RSRTPARRRSRTRSPVRRRSRSRSPARRSGRSR----SRTPARRGRSRSRTPARRGRSRS 671
Query: 276 ALPERESGSPGSGVKTRPG 294
P R SG S R G
Sbjct: 672 RTPARRSGRSRSRTPARRG 690
Score = 30.8 bits (68), Expect = 1.6
Identities = 64/289 (22%), Positives = 97/289 (33%), Gaps = 52/289 (17%)
Query: 8 PLPEPPKSEPKPPSMAP-QSQPDRGRVRRLVTNCAGSGPPGAPRETESAR---------- 56
P PE + P+PP+ P ++ G + L T P P E R
Sbjct: 352 PSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEK 411
Query: 57 --TGTEDYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRG 114
+ +S + + + A P +P PA RE + P S+
Sbjct: 412 LPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAP----------GSHREISSSPTSKN 461
Query: 115 ATTCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPGRITLQTNPSQSR--- 171
+ GR + +H+ P+R G + S G R + S+SR
Sbjct: 462 RSH-GRAKRDKSHSHTPSRRMGRS--------RSPATAKRGRSRSRTPTKRGHSRSRSPQ 512
Query: 172 WHEDRCMIGFWR-LAEGIPGAGKAPYQPPDWEHSGVASRR-----KCFGRSPGRRDAVTG 225
W R + R + G ++P Q P W S RR GRS R A G
Sbjct: 513 WRRSRSAQRWGRSRSPQRRGRSRSP-QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRG 571
Query: 226 ERCRPRPAVNAMARRRRVFPSPALLALHSQELNCGKTPPNKVNGPRNPA 274
PA +R R +PA + + +TP + + R PA
Sbjct: 572 RSRSRTPARRGRSRSR----TPA------RRRSRSRTPTRRRSRSRTPA 610
Score = 30.8 bits (68), Expect = 1.6
Identities = 75/328 (22%), Positives = 115/328 (35%), Gaps = 71/328 (21%)
Query: 15 SEPKPPSMAPQSQPDRGRVRRLVTNCAGSGP-----------PGAPRETESARTGTED-- 61
S P+P + AP++ P R R ++ G GP P P ++ +AR G+
Sbjct: 1620 SSPEPKAPAPRALPRRSRSG---SSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSP 1676
Query: 62 ---YNSHTTARARAIQG-----------------------RAGGPPLMRRPGPAVTYTSY 95
S T R R+ + R+ PP RR P+V+ +
Sbjct: 1677 EPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRR-SPSVS-SPE 1734
Query: 96 PWLRLRGKREALTWPGSRGATTCGRGRSLCTHALPPARPEG---PAAHAHEAPGASIQRV 152
P + R R + R TT RGRS P +P G + + + +R
Sbjct: 1735 PAEKSRSSRRRRSASSPRTKTTSRRGRS------PSPKPRGLQRSRSRSRREKTRTTRRR 1788
Query: 153 AAGAEPGRITLQTNPSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKC 212
+ + S+SR R G G+G P E S +SRR+
Sbjct: 1789 DRSGSSQSTSRRRQRSRSRSRVTRRRRG---------GSGYHSRSPARQESSRTSSRRR- 1838
Query: 213 FGRSPGRRDAVTGERCRPRPAVNAMARRRRVFPSPALLALHSQELNCGKTPPNKVNGPRN 272
R R + +R R R + A +R R SPA + + +TP R+
Sbjct: 1839 --RGRSRTPPTSRKRSRSRTS-PAPWKRSRSRASPA-----THRRSRSRTPLISRRRSRS 1890
Query: 273 PAGALPERESGSPGSGVKTRPGGHAIPM 300
+ R S S S + R A P+
Sbjct: 1891 RTSPVSRRRSRSRTSVTRRRSRSRASPV 1918
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 38.1 bits (87), Expect = 0.010
Identities = 76/301 (25%), Positives = 102/301 (33%), Gaps = 85/301 (28%)
Query: 2 SPGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSG----------------- 44
+P SS LP P SEP + AP+ T CAG+G
Sbjct: 95 NPASSPRLPLPADSEPDAYTSAPRGSGP--------TYCAGAGNSRAGGGLTKYNSAHSS 146
Query: 45 ----PPGAPRETESARTGTEDYNSHTTARARAIQGRAG------GPPLMRRPGPAVTYTS 94
P P + A G AR + + GR+ GP RRP P +T
Sbjct: 147 SRVPRPRLPSQRRGASCGLGPGPESRAAR-QGLGGRSARARTRRGPHRTRRPEPGPHHT- 204
Query: 95 YPWLRLRGKREALTWPGSRGAT-TCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVA 153
G R+A PG+RG T G G + GPA H G S+
Sbjct: 205 -------GARQAGPLPGTRGRTRAAGTG----------SAARGPARHLR---GGSV---- 240
Query: 154 AGAEPGRITLQTNPSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQ-PPDWEHSGVASRRKC 212
A A R + P +SR R + + P + PP ++RR+C
Sbjct: 241 AAAAAARCLGLSPPGRSRLFSPRSSL------------ARPPLRFPPARPALSPSARRRC 288
Query: 213 -----FGRSPGRRDAVTGERCRP-RPAVNAM----ARRRRVFPSPALLALHSQELNCGKT 262
P +A R P RP + + ARR + P PA L L G +
Sbjct: 289 RVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAALRPGTS 348
Query: 263 P 263
P
Sbjct: 349 P 349
Score = 30.0 bits (66), Expect = 2.7
Identities = 70/284 (24%), Positives = 92/284 (32%), Gaps = 77/284 (27%)
Query: 3 PGSSFPLPEPPKSEPKP----------------------PSMA-PQSQPDRGRVRRLVTN 39
PG ++ LPE P + KP PS A P + P G + N
Sbjct: 36 PGEAYSLPELPFKKSKPFLPQSKQKADTETIGSSGGSRGPSPAHPWTTPQPGPPHQPGFN 95
Query: 40 CAGSGPPGAPRETESARTGTEDYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLR 99
A S P ++E + S T A A RAGG + + A + + P R
Sbjct: 96 PASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAGGG--LTKYNSAHSSSRVPRPR 153
Query: 100 LRGKREALTWPGSRGATTCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPG 159
L P R +CG G PE AA R G
Sbjct: 154 L---------PSQRRGASCGLGPG----------PESRAA-----------RQGLGGRSA 183
Query: 160 RITLQTNPSQSRWHEDRCMIGFWRLAEGIP---------GAGKAPYQPPDWEHSG---VA 207
R + P ++R E R A +P G G A P G A
Sbjct: 184 RARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAA 243
Query: 208 SRRKCFGRSPGRRDAVTGER---CRP-------RPAVNAMARRR 241
+ +C G SP R + R RP RPA++ ARRR
Sbjct: 244 AAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 38.1 bits (87), Expect = 0.010
Identities = 76/301 (25%), Positives = 102/301 (33%), Gaps = 85/301 (28%)
Query: 2 SPGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSG----------------- 44
+P SS LP P SEP + AP+ T CAG+G
Sbjct: 95 NPASSPRLPLPADSEPDAYTSAPRGSGP--------TYCAGAGNSRAGGGLTKYNSAHSS 146
Query: 45 ----PPGAPRETESARTGTEDYNSHTTARARAIQGRAG------GPPLMRRPGPAVTYTS 94
P P + A G AR + + GR+ GP RRP P +T
Sbjct: 147 SRVPRPRLPSQRRGASCGLGPGPESRAAR-QGLGGRSARARTRRGPHRTRRPEPGPHHT- 204
Query: 95 YPWLRLRGKREALTWPGSRGAT-TCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVA 153
G R+A PG+RG T G G + GPA H G S+
Sbjct: 205 -------GARQAGPLPGTRGRTRAAGTG----------SAARGPARHLR---GGSV---- 240
Query: 154 AGAEPGRITLQTNPSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQ-PPDWEHSGVASRRKC 212
A A R + P +SR R + + P + PP ++RR+C
Sbjct: 241 AAAAAARCLGLSPPGRSRLFSPRSSL------------ARPPLRFPPARPALSPSARRRC 288
Query: 213 -----FGRSPGRRDAVTGERCRP-RPAVNAM----ARRRRVFPSPALLALHSQELNCGKT 262
P +A R P RP + + ARR + P PA L L G +
Sbjct: 289 RVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAALRPGTS 348
Query: 263 P 263
P
Sbjct: 349 P 349
Score = 30.0 bits (66), Expect = 2.7
Identities = 70/284 (24%), Positives = 92/284 (32%), Gaps = 77/284 (27%)
Query: 3 PGSSFPLPEPPKSEPKP----------------------PSMA-PQSQPDRGRVRRLVTN 39
PG ++ LPE P + KP PS A P + P G + N
Sbjct: 36 PGEAYSLPELPFKKSKPFLPQSKQKADTETIGSSGGSRGPSPAHPWTTPQPGPPHQPGFN 95
Query: 40 CAGSGPPGAPRETESARTGTEDYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLR 99
A S P ++E + S T A A RAGG + + A + + P R
Sbjct: 96 PASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAGGG--LTKYNSAHSSSRVPRPR 153
Query: 100 LRGKREALTWPGSRGATTCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPG 159
L P R +CG G PE AA R G
Sbjct: 154 L---------PSQRRGASCGLGPG----------PESRAA-----------RQGLGGRSA 183
Query: 160 RITLQTNPSQSRWHEDRCMIGFWRLAEGIP---------GAGKAPYQPPDWEHSG---VA 207
R + P ++R E R A +P G G A P G A
Sbjct: 184 RARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAA 243
Query: 208 SRRKCFGRSPGRRDAVTGER---CRP-------RPAVNAMARRR 241
+ +C G SP R + R RP RPA++ ARRR
Sbjct: 244 AAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 38.1 bits (87), Expect = 0.010
Identities = 76/301 (25%), Positives = 102/301 (33%), Gaps = 85/301 (28%)
Query: 2 SPGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSG----------------- 44
+P SS LP P SEP + AP+ T CAG+G
Sbjct: 95 NPASSPRLPLPADSEPDAYTSAPRGSGP--------TYCAGAGNSRAGGGLTKYNSAHSS 146
Query: 45 ----PPGAPRETESARTGTEDYNSHTTARARAIQGRAG------GPPLMRRPGPAVTYTS 94
P P + A G AR + + GR+ GP RRP P +T
Sbjct: 147 SRVPRPRLPSQRRGASCGLGPGPESRAAR-QGLGGRSARARTRRGPHRTRRPEPGPHHT- 204
Query: 95 YPWLRLRGKREALTWPGSRGAT-TCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVA 153
G R+A PG+RG T G G + GPA H G S+
Sbjct: 205 -------GARQAGPLPGTRGRTRAAGTG----------SAARGPARHLR---GGSV---- 240
Query: 154 AGAEPGRITLQTNPSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQ-PPDWEHSGVASRRKC 212
A A R + P +SR R + + P + PP ++RR+C
Sbjct: 241 AAAAAARCLGLSPPGRSRLFSPRSSL------------ARPPLRFPPARPALSPSARRRC 288
Query: 213 -----FGRSPGRRDAVTGERCRP-RPAVNAM----ARRRRVFPSPALLALHSQELNCGKT 262
P +A R P RP + + ARR + P PA L L G +
Sbjct: 289 RVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAALRPGTS 348
Query: 263 P 263
P
Sbjct: 349 P 349
Score = 30.0 bits (66), Expect = 2.7
Identities = 70/284 (24%), Positives = 92/284 (32%), Gaps = 77/284 (27%)
Query: 3 PGSSFPLPEPPKSEPKP----------------------PSMA-PQSQPDRGRVRRLVTN 39
PG ++ LPE P + KP PS A P + P G + N
Sbjct: 36 PGEAYSLPELPFKKSKPFLPQSKQKADTETIGSSGGSRGPSPAHPWTTPQPGPPHQPGFN 95
Query: 40 CAGSGPPGAPRETESARTGTEDYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLR 99
A S P ++E + S T A A RAGG + + A + + P R
Sbjct: 96 PASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAGGG--LTKYNSAHSSSRVPRPR 153
Query: 100 LRGKREALTWPGSRGATTCGRGRSLCTHALPPARPEGPAAHAHEAPGASIQRVAAGAEPG 159
L P R +CG G PE AA R G
Sbjct: 154 L---------PSQRRGASCGLGPG----------PESRAA-----------RQGLGGRSA 183
Query: 160 RITLQTNPSQSRWHEDRCMIGFWRLAEGIP---------GAGKAPYQPPDWEHSG---VA 207
R + P ++R E R A +P G G A P G A
Sbjct: 184 RARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAA 243
Query: 208 SRRKCFGRSPGRRDAVTGER---CRP-------RPAVNAMARRR 241
+ +C G SP R + R RP RPA++ ARRR
Sbjct: 244 AAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287
>gi|239756083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 36.6 bits (83), Expect = 0.029
Identities = 46/153 (30%), Positives = 54/153 (35%), Gaps = 27/153 (17%)
Query: 4 GSSFPLPEPPKSEP----------KPPSMAPQSQPDRGRVRRLVTNCAGSGP------PG 47
GSS P P P S P PP QS +R L C SG PG
Sbjct: 5 GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPG 64
Query: 48 APRETESARTGTEDYNSHTTARARAIQGRAGGPPLMRR------PGPAVTYTSYPWLRLR 101
R S R+ ++ A + RA PL R PGP T +P R
Sbjct: 65 TGRPRRSPRSRSQS----VVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
Query: 102 GKREALTWPGSRGATTCGRGRSLCTHALPPARP 134
E PG RGA G L ++LP RP
Sbjct: 121 RAAERTIGPGRRGAPGRRTG-PLRENSLPVLRP 152
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 36.6 bits (83), Expect = 0.029
Identities = 59/214 (27%), Positives = 71/214 (33%), Gaps = 38/214 (17%)
Query: 6 SFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETE-SARTGTEDYNS 64
SFP+PEPP P +P V C+ AP AR+ S
Sbjct: 16 SFPVPEPPPLSNSSQRADPARRPGAPWVS---PGCSPESLRAAPLPGSLGARS-----RS 67
Query: 65 HTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGRGRSL 124
H+ A A RA G R P A T + LRL WPG GA+ R R
Sbjct: 68 HSGPPATAAAARASGHAHGRWPRSAATACT---LRLS------PWPG--GASCHHRPRY- 115
Query: 125 CTHALPPARPEGPAAHAHEAPGASIQRVAA----GAEPGRITLQTNPSQSRWHEDRCMI- 179
H +P G A+ S+ R A P R P+ W C +
Sbjct: 116 --HLRRRPQPHGAAS------SCSLPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167
Query: 180 ----GFWRLAEGIPGAGKAPYQPPDWEHSGVASR 209
WR G P A PPD S SR
Sbjct: 168 RGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSR 201
>gi|239750612 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 36.6 bits (83), Expect = 0.029
Identities = 46/153 (30%), Positives = 54/153 (35%), Gaps = 27/153 (17%)
Query: 4 GSSFPLPEPPKSEP----------KPPSMAPQSQPDRGRVRRLVTNCAGSGP------PG 47
GSS P P P S P PP QS +R L C SG PG
Sbjct: 5 GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPG 64
Query: 48 APRETESARTGTEDYNSHTTARARAIQGRAGGPPLMRR------PGPAVTYTSYPWLRLR 101
R S R+ ++ A + RA PL R PGP T +P R
Sbjct: 65 TGRPRRSPRSRSQS----VVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
Query: 102 GKREALTWPGSRGATTCGRGRSLCTHALPPARP 134
E PG RGA G L ++LP RP
Sbjct: 121 RAAERTIGPGRRGAPGRRTG-PLRENSLPVLRP 152
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 36.6 bits (83), Expect = 0.029
Identities = 59/214 (27%), Positives = 71/214 (33%), Gaps = 38/214 (17%)
Query: 6 SFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETE-SARTGTEDYNS 64
SFP+PEPP P +P V C+ AP AR+ S
Sbjct: 16 SFPVPEPPPLSNSSQRADPARRPGAPWVS---PGCSPESLRAAPLPGSLGARS-----RS 67
Query: 65 HTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGRGRSL 124
H+ A A RA G R P A T + LRL WPG GA+ R R
Sbjct: 68 HSGPPATAAAARASGHAHGRWPRSAATACT---LRLS------PWPG--GASCHHRPRY- 115
Query: 125 CTHALPPARPEGPAAHAHEAPGASIQRVAA----GAEPGRITLQTNPSQSRWHEDRCMI- 179
H +P G A+ S+ R A P R P+ W C +
Sbjct: 116 --HLRRRPQPHGAAS------SCSLPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167
Query: 180 ----GFWRLAEGIPGAGKAPYQPPDWEHSGVASR 209
WR G P A PPD S SR
Sbjct: 168 RGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSR 201
>gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo
sapiens]
Length = 174
Score = 36.6 bits (83), Expect = 0.029
Identities = 46/153 (30%), Positives = 54/153 (35%), Gaps = 27/153 (17%)
Query: 4 GSSFPLPEPPKSEP----------KPPSMAPQSQPDRGRVRRLVTNCAGSGP------PG 47
GSS P P P S P PP QS +R L C SG PG
Sbjct: 5 GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPG 64
Query: 48 APRETESARTGTEDYNSHTTARARAIQGRAGGPPLMRR------PGPAVTYTSYPWLRLR 101
R S R+ ++ A + RA PL R PGP T +P R
Sbjct: 65 TGRPRRSPRSRSQS----VVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
Query: 102 GKREALTWPGSRGATTCGRGRSLCTHALPPARP 134
E PG RGA G L ++LP RP
Sbjct: 121 RAAERTIGPGRRGAPGRRTG-PLRENSLPVLRP 152
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 36.6 bits (83), Expect = 0.029
Identities = 59/214 (27%), Positives = 71/214 (33%), Gaps = 38/214 (17%)
Query: 6 SFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETE-SARTGTEDYNS 64
SFP+PEPP P +P V C+ AP AR+ S
Sbjct: 16 SFPVPEPPPLSNSSQRADPARRPGAPWVS---PGCSPESLRAAPLPGSLGARS-----RS 67
Query: 65 HTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGRGRSL 124
H+ A A RA G R P A T + LRL WPG GA+ R R
Sbjct: 68 HSGPPATAAAARASGHAHGRWPRSAATACT---LRLS------PWPG--GASCHHRPRY- 115
Query: 125 CTHALPPARPEGPAAHAHEAPGASIQRVAA----GAEPGRITLQTNPSQSRWHEDRCMI- 179
H +P G A+ S+ R A P R P+ W C +
Sbjct: 116 --HLRRRPQPHGAAS------SCSLPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167
Query: 180 ----GFWRLAEGIPGAGKAPYQPPDWEHSGVASR 209
WR G P A PPD S SR
Sbjct: 168 RGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSR 201
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 36.6 bits (83), Expect = 0.029
Identities = 78/320 (24%), Positives = 113/320 (35%), Gaps = 59/320 (18%)
Query: 8 PLPEPPKSEPKPPSMAPQSQPDRG--RVRRLVTNCAGSGPPGAPRETESARTGTEDYNSH 65
P P PP S P PPS + + G V + + P P E E E +
Sbjct: 383 PAPLPPSSSPGPPSQDSRQVENGGTEEVAQPSPTASLESKPYNPFEEEEEDKEEEAPAAP 442
Query: 66 TTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGRGRSLC 125
+ A + A+ G P P +T TS P + KR A P + A+ S
Sbjct: 443 SLATSPAL-GHPESTPKSLHPWYGITPTSSPKTK---KRPA---PRAPSASPLALHASRL 495
Query: 126 THALPPARPEGPAAHAHEAPGASIQRVAAGAE---------------------PGR-ITL 163
+H+ PP+ PA S + AGAE PG ++L
Sbjct: 496 SHSEPPSATPSPALSVESLSSESASQ-TAGAELLEPPAVPKSSSEPAVHAPGTPGNPVSL 554
Query: 164 QTNPSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAV 223
TN S + E L E P + P P G+A R + S G + A
Sbjct: 555 STNSSLASSGE---------LVE--PRVEQMPQASP-----GLAPRTR---GSSGPQPAK 595
Query: 224 TGERCRPRPAVNAMARRRRVFPSPALLALHSQ-ELNCGKTPPNKVNGPRNPAGALPERES 282
P P + + R PSP + Q + +C + P N+ P A P +
Sbjct: 596 PCSGATPTPLL--LVGDRSPVPSPGSSSPQLQVKSSCKENPFNRKPSP----AASPATKK 649
Query: 283 GSPGS-GVKTRPGGHAIPML 301
+ GS V+ GH P++
Sbjct: 650 ATKGSKPVRPPAPGHGFPLI 669
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 36.6 bits (83), Expect = 0.029
Identities = 53/208 (25%), Positives = 71/208 (34%), Gaps = 43/208 (20%)
Query: 48 APRETESARTGTEDYN-------SHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRL 100
AP G ED+ S AR R ++GR G P R G T +P R
Sbjct: 1116 APPRGRDGFPGPEDFGPEENFDASEEAARGRDLRGRGRGTPRGGRKGLLPTPDEFP--RF 1173
Query: 101 RGKREALTWPGSR---------------------GATTCGRGRSLCTHALPPARPEGPAA 139
G R+ +W G+R G + R RS + A
Sbjct: 1174 EGGRKPDSWDGNREPGPGHEHFRDTPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKR 1233
Query: 140 HAHEAPGASIQRVAAGAEPGRITLQTNPSQSRWHEDRCMIGFWRLAEGIPGAGKAPYQPP 199
H+ PG S R PG PS+ R + R G A+ +P +G++
Sbjct: 1234 PWHDGPGTSEHREMEA--PG------GPSEDRGGKGR---GGPGPAQRVPKSGRS--SSL 1280
Query: 200 DWEHSGVASRRKCFGRSPGRRDAVTGER 227
D EH R + FG PG G R
Sbjct: 1281 DGEHHDGYHRDEPFGGPPGSGTPSRGGR 1308
>gi|239744384 PREDICTED: hypothetical protein XP_002343133 [Homo
sapiens]
Length = 263
Score = 36.2 bits (82), Expect = 0.038
Identities = 45/168 (26%), Positives = 57/168 (33%), Gaps = 33/168 (19%)
Query: 2 SPGSSFPLPEPP-KSEPKPPSMAPQSQPDRG-----------------RVRRLVTNCAGS 43
S SSF L PP + KPPS P G +RR C G
Sbjct: 92 SRNSSFSLSLPPLPTTKKPPSTGRWDSPGVGICSPNHPTQNSDFQNIPDLRRRAHLCRGE 151
Query: 44 GPPGAPRETESARTGTEDYNSHTTARARAIQGRAG-------------GPPLMRRPGPAV 90
G E E T ++ HT AR A + G G PL+ A
Sbjct: 152 GASALGEEGEWLCTHFTEHTEHT-ARHEAAPPQPGLTRCSGGCRYPLWGSPLLGPLEAAA 210
Query: 91 TYTSYPWLRLRGKREALTWPGSRGATTCGRGRSLCTHALPPARPEGPA 138
++ W+ G RE+L R + +CG H P A PE A
Sbjct: 211 SHAVNSWVGGGGDRESLKTLSGRSSISCGTNVP-ARHPSPNAGPEQTA 257
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 36.2 bits (82), Expect = 0.038
Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 17/151 (11%)
Query: 8 PLPEPPKSEPKPPSMAPQS--------QPDRGRVRRLVTNCAGSGPPGAPRETESARTG- 58
P PPK P PP+ P S P VT + G P P T S++ G
Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGP 1360
Query: 59 TEDYNSHTTARARAIQGRAGGP---PLMRRPGPAVTY-----TSYPWLRLRGKREALTWP 110
T + A GGP P + GPA+ TS + L K+ T
Sbjct: 1361 TTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPV 1420
Query: 111 GSRGATTCGRGRSLCTHALPPARPEGPAAHA 141
GA T +G P + + PA A
Sbjct: 1421 TREGAATPSKGDLTPPAVTPVSLKKAPATSA 1451
Score = 32.0 bits (71), Expect = 0.71
Identities = 39/133 (29%), Positives = 46/133 (34%), Gaps = 16/133 (12%)
Query: 8 PLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNSHTT 67
P PK P PP+ P S P G A P GAP T A T S
Sbjct: 977 PATPSPKGAPTPPAATPPS-PKGGP--------ATPSPKGAP--TPPAVTPPSPKGS--- 1022
Query: 68 ARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRG--ATTCGRGRSLC 125
A A PP P P + + P + A T P +G AT +G
Sbjct: 1023 PAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTP 1082
Query: 126 THALPPARPEGPA 138
A PP+ GPA
Sbjct: 1083 PAATPPSPKGGPA 1095
Score = 30.8 bits (68), Expect = 1.6
Identities = 38/134 (28%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 8 PLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNSHTT 67
P PK P PP+ P S P G A P GAP T A T T
Sbjct: 954 PATPSPKWAPTPPAATPPS-PKGGP--------ATPSPKGAP--TPPAATPPSPKGGPAT 1002
Query: 68 ARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWP---GSRGATTCGRGRSL 124
+ A PP + P P + + P+ + A T P GS AT +G
Sbjct: 1003 PSPKG----APTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPT 1058
Query: 125 CTHALPPARPEGPA 138
A P+ GPA
Sbjct: 1059 TPAATLPSPKGGPA 1072
Score = 30.8 bits (68), Expect = 1.6
Identities = 33/138 (23%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 8 PLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNSHTT 67
P PK P PP++ P S P A + P P + + T T
Sbjct: 1000 PATPSPKGAPTPPAVTPPS-PKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPT 1058
Query: 68 ARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRG--ATTCGRGRSLC 125
A + GGP + P L+ A T P +G AT +G +
Sbjct: 1059 TPAATLPSPKGGP-------------ATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMP 1105
Query: 126 THALPPARPEGPAAHAHE 143
A PP+ G A H+
Sbjct: 1106 PAATPPSPKGGLATPPHK 1123
Score = 29.6 bits (65), Expect = 3.5
Identities = 41/146 (28%), Positives = 48/146 (32%), Gaps = 32/146 (21%)
Query: 8 PLPEPPKSEPKPPSMAPQS-------QPDRGRVRRLVT-------NCAGSGPPGAPRETE 53
P PPK P PP+ P S P +G V A S P GAP T
Sbjct: 1255 PATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAP--TP 1312
Query: 54 SARTGTEDYNSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSR 113
A T S T + A PP + P P T T T P S+
Sbjct: 1313 PAATPPSPKGSPGTPPPKG----APTPPAVTPPSPKGTPTL-----------PATTPSSK 1357
Query: 114 GATTCGRGRSLCT-HALPPARPEGPA 138
G T + T A P+ GPA
Sbjct: 1358 GGPTTPSSKEGPTPPAATPSHKGGPA 1383
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 35.4 bits (80), Expect = 0.065
Identities = 71/259 (27%), Positives = 91/259 (35%), Gaps = 35/259 (13%)
Query: 3 PGSSFP--LPEPPKSEPKPPSMAPQS-------QPDRGRVRRLVTNCAGSGPPGAPRETE 53
P +FP LP P K E K P ++ P GRV V + + PGA +
Sbjct: 232 PAQAFPGHLPLPTKVEAKAPETPSENLRTGLELAPAPGRVN--VVSPSLEVAPGAGQGAS 289
Query: 54 SARTGTEDYNSHTTARARAIQG---RAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWP 110
S+R E T R G + GPP + A R+ + + P
Sbjct: 290 SSRPDPEPLEEGT----RLTPGPGPQCPGPPGLPAQARATHSGGETPPRISIHIQEMDTP 345
Query: 111 GSRGATTCGR-GRSLCTHALPPARP--EGPAAHAHEAPGASIQRVAAGAEPGRITLQTNP 167
G T G G +L T A A+P +GP PG A G EPG T +
Sbjct: 346 GEMLMTGRGSLGPTLTTEAPAAAQPGKQGP-------PGTGRCLQAPGTEPGEQTPEGAR 398
Query: 168 SQSRWHEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSG-----VASRRKCFGRSPGRRDA 222
S E G AE AG P P S V + G+SPG +
Sbjct: 399 ELSPLQESSSPGGV--KAEEEQRAGAEPGTRPSLARSDDNDHEVGALGLQQGKSPGAGNP 456
Query: 223 VTGERCRPRPAVNAMARRR 241
+ C R V A A RR
Sbjct: 457 EPEQDCAARAPVRAEAVRR 475
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 35.4 bits (80), Expect = 0.065
Identities = 44/167 (26%), Positives = 56/167 (33%), Gaps = 30/167 (17%)
Query: 5 SSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNS 64
S+ P P P P++ P +P CAG PP A R+ R
Sbjct: 107 STAPPRHPRPRRPGGPALRPTPRP-----------CAGPAPPPASRDCRCRRPRRWPRAG 155
Query: 65 HTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWP--------GSRGAT 116
RA A + G R P +Y + G A T P S A+
Sbjct: 156 RRGRRAGACKPSCAGAAWSARGAPLCSYRT----SCAGSCGARTAPTPAPTCASPSAAAS 211
Query: 117 TCGRGRSLC---THALPPARPEGPAAHAHEAPGASIQRVAAGAEPGR 160
+C R R C T A A GP A PG + + A PGR
Sbjct: 212 SCCRRRRACSSPTTAWSGACGAGPTAATAAQPG----KPRSAAAPGR 254
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 35.0 bits (79), Expect = 0.084
Identities = 50/153 (32%), Positives = 60/153 (39%), Gaps = 37/153 (24%)
Query: 6 SFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNSH 65
S P P PP+ P+ PS RR C GP RE R G+ D +
Sbjct: 60 SSPRPFPPR--PERPS------------RRHRAGCGAHGPGSRGRER---RRGSRDPPAG 102
Query: 66 TTARARAIQGRA---GGPPLMRRPGPAVTYTSYP--WLRLRGKREALTWPGSRGATTCGR 120
ARARA +GR+ P GPA + P W + T P SR +
Sbjct: 103 PVARARA-RGRSAPGSAQPASGAAGPAAAPEAAPPAW-------DPATLPPSR------K 148
Query: 121 GRSLCTHALPPARPEGPAAHAHEAPGASIQRVA 153
SL + L P R AHA A G SI RVA
Sbjct: 149 RNSLGSSPLHPVRLGRVRAHAGPA-GTSILRVA 180
>gi|239750075 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 35.0 bits (79), Expect = 0.084
Identities = 45/168 (26%), Positives = 56/168 (33%), Gaps = 33/168 (19%)
Query: 2 SPGSSFPLPEPPKSEPK-PPSMAPQSQPDRG-----------------RVRRLVTNCAGS 43
S SSF L PP K PPS P G +RR C G
Sbjct: 92 SRNSSFSLSLPPLPTTKQPPSTGRWDSPGVGICSPNHPTQNSDFQNIPDLRRRAHLCRGE 151
Query: 44 GPPGAPRETESARTGTEDYNSHTTARARAIQGRAG-------------GPPLMRRPGPAV 90
G E E T ++ HT AR A + G G PL+ A
Sbjct: 152 GASALGEEGEWLCTHFTEHTEHT-ARHEAAPPQPGLTRCSGGCRYPLWGSPLLGPLEAAA 210
Query: 91 TYTSYPWLRLRGKREALTWPGSRGATTCGRGRSLCTHALPPARPEGPA 138
++ W+ G RE+L R + +CG H P A PE A
Sbjct: 211 SHAVNSWVGGGGDRESLKTLSGRSSISCGTNVP-ARHPSPNAGPEQTA 257
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 35.0 bits (79), Expect = 0.084
Identities = 50/153 (32%), Positives = 60/153 (39%), Gaps = 37/153 (24%)
Query: 6 SFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDYNSH 65
S P P PP+ P+ PS RR C GP RE R G+ D +
Sbjct: 60 SSPRPFPPR--PERPS------------RRHRAGCGAHGPGSRGRER---RRGSRDPPAG 102
Query: 66 TTARARAIQGRA---GGPPLMRRPGPAVTYTSYP--WLRLRGKREALTWPGSRGATTCGR 120
ARARA +GR+ P GPA + P W + T P SR +
Sbjct: 103 PVARARA-RGRSAPGSAQPASGAAGPAAAPEAAPPAW-------DPATLPPSR------K 148
Query: 121 GRSLCTHALPPARPEGPAAHAHEAPGASIQRVA 153
SL + L P R AHA A G SI RVA
Sbjct: 149 RNSLGSSPLHPVRLGRVRAHAGPA-GTSILRVA 180
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 35.0 bits (79), Expect = 0.084
Identities = 71/323 (21%), Positives = 111/323 (34%), Gaps = 68/323 (21%)
Query: 3 PGSSFPLPEPPKSEPKPPSMAPQSQPDRGRVRRLVTNCAGSGPPGAPRETESARTGTEDY 62
P P +P + + P S++ Q QP++ + + T GP P+ + D
Sbjct: 220 PKQQGPGRDPLQQDGTPKSISSQ-QPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDA 278
Query: 63 NSHTTARARAIQGRAGGPPLMRRPGPAVTYTSYPWLRLRGKREALTWPGSRGATTCGRGR 122
+ T +A ++G + P L P P+ P PG A G +
Sbjct: 279 SRPQTKQADIVRGESVKPSL---PSPSKPPIQQPT------------PGKPPAQQPGHEK 323
Query: 123 SLCTHALPPARPEGPAAHAHEAPGA-------------SIQRVAAGAEPGRITLQTNPSQ 169
S A PPA+P G + PG Q + P + T PS
Sbjct: 324 SQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSS 383
Query: 170 SRWHEDRCMIGFWRLAEGIPGAGKAPYQPPDWEHSGVASRRKCFGRSPGRRDAVTGERCR 229
+ G LA+ PG GK P Q P G A P + T +
Sbjct: 384 EQ-------PGPKALAQP-PGVGKTPAQQP-----GPA--------KPPTQQVGTPKPLA 422
Query: 230 PRPAVNAMAR----RRRVFPSPALLALHSQELNCGKT---------PPNKVNGPRNPAGA 276
+P + + A+ + P + +Q+ GKT PP+++ GP P
Sbjct: 423 QQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKP--- 479
Query: 277 LPERESGSPGSGVKTRPGGHAIP 299
P ++ G P +PG P
Sbjct: 480 -PPQQPG-PAKPPPQQPGSAKPP 500
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,958,910
Number of Sequences: 37866
Number of extensions: 1109026
Number of successful extensions: 7807
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 372
Number of HSP's that attempted gapping in prelim test: 6958
Number of HSP's gapped (non-prelim): 1175
length of query: 309
length of database: 18,247,518
effective HSP length: 102
effective length of query: 207
effective length of database: 14,385,186
effective search space: 2977733502
effective search space used: 2977733502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.