Search of human proteins with 239756904

Search of human proteins with 239756904

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756904 PREDICTED: similar to SNRNP200 protein [Homo
sapiens]
         (302 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756904 PREDICTED: similar to SNRNP200 protein [Homo sapiens]    600   e-172
gi|40217847 activating signal cointegrator 1 complex subunit 3-l...   498   e-141
gi|239745928 PREDICTED: hypothetical protein XP_002343618 [Homo ...   492   e-139
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote...   471   e-133
gi|76880486 activating signal cointegrator 1 complex subunit 3 i...    97   1e-20
gi|6005872 SEC63-like protein [Homo sapiens]                           69   7e-12
gi|66933016 inosine monophosphate dehydrogenase 2 [Homo sapiens]       31   1.5  
gi|110349719 titin isoform N2-A [Homo sapiens]                         30   2.6  
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]        30   2.6  
gi|112382372 guanylate binding protein 3 [Homo sapiens]                30   3.4  
gi|166706903 guanylate binding protein 1, interferon-inducible, ...    29   5.8  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    28   7.6  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    28   7.6  
gi|87299628 biorientation of chromosomes in cell division 1-like...    28   7.6  
gi|4505069 MAX dimerization protein 1 [Homo sapiens]                   28   7.6  
gi|62243696 stromal antigen 1 [Homo sapiens]                           28   7.6  
gi|225579152 insulin-like growth factor binding protein, acid la...    28   10.0 
gi|4826772 insulin-like growth factor binding protein, acid labi...    28   10.0 
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ...    28   10.0 
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]                     28   10.0 
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo...    28   10.0 
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap...    28   10.0 
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap...    28   10.0 

>gi|239756904 PREDICTED: similar to SNRNP200 protein [Homo sapiens]
          Length = 302

 Score =  600 bits (1548), Expect = e-172
 Identities = 302/302 (100%), Positives = 302/302 (100%)

Query: 1   MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGATGYENIPIQHHEENFLRQLAQKVPDKL 60
           MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGATGYENIPIQHHEENFLRQLAQKVPDKL
Sbjct: 1   MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGATGYENIPIQHHEENFLRQLAQKVPDKL 60

Query: 61  NNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQACVDVLSSNGWLSSA 120
           NNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQACVDVLSSNGWLSSA
Sbjct: 61  NNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQACVDVLSSNGWLSSA 120

Query: 121 LAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQL 180
           LAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQL
Sbjct: 121 LAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQL 180

Query: 181 TDSQITDEVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDTKSN 240
           TDSQITDEVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDTKSN
Sbjct: 181 TDSQITDEVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDTKSN 240

Query: 241 SLISIKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSD 300
           SLISIKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSD
Sbjct: 241 SLISIKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSD 300

Query: 301 SD 302
           SD
Sbjct: 301 SD 302


>gi|40217847 activating signal cointegrator 1 complex subunit 3-like 1
            [Homo sapiens]
          Length = 2136

 Score =  498 bits (1283), Expect = e-141
 Identities = 256/311 (82%), Positives = 269/311 (86%), Gaps = 18/311 (5%)

Query: 10   FLKLKTFGFSIQEGTRVG---ERKRGATGYENIPIQHHEENFLRQLAQKVPDKLNNPKFN 66
            +  ++ F  S+   T+V    E    A  YENIPI+HHE+N LRQLAQKVP KLNNPKFN
Sbjct: 1826 YTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFN 1885

Query: 67   DPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMEL 126
            DPH+KTNLLLQAHLSRMQLSAELQSDTEEILSKA+RL+QACVDVLSSNGWLS ALAAMEL
Sbjct: 1886 DPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMEL 1945

Query: 127  AQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQIT 186
            AQMVTQAMWSKDSYLKQLPHF SEHIKRCTDKGV+SVFDIMEMEDEERN +LQLTDSQI 
Sbjct: 1946 AQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIA 2005

Query: 187  D---------------EVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPLFPQKREEGWW 231
            D               EVVDKDSIRSGGP VVLVQLEREEEVTGPVIAPLFPQKREEGWW
Sbjct: 2006 DVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWW 2065

Query: 232  VVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMD 291
            VVIGD KSNSLISIKRL LQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFS+D
Sbjct: 2066 VVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD 2125

Query: 292  VKEAETDSDSD 302
            VKEAETDSDSD
Sbjct: 2126 VKEAETDSDSD 2136



 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 22/269 (8%)

Query: 36   YENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSA-ELQSDTE 94
            ++NI ++  E+  L++L ++VP  +      +P  K N+LLQA +S+++L    L +D  
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKE-SIEEPSAKINVLLQAFISQLKLEGFALMADMV 1082

Query: 95   EILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKR 154
             +   A RL++A  +++ + GW       + L +M+ + MW     L+Q      E +K+
Sbjct: 1083 YVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKK 1142

Query: 155  CTDKGVKSVFDIMEMEDEERNTILQLTDSQITDEVVDK--DSIRSGGPAVVLVQLEREEE 212
               K     F    + D   N I +L       + + K          +V L  + R   
Sbjct: 1143 IEKKN----FPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTL 1198

Query: 213  VTGPVIAPLFPQKRE-----EGWWVVIGDTKSNSLISIKRLILQQKAKVKLD-----FVA 262
                 I P F    +     E +W+++ D  S  ++  +  +L  KAK   D     F  
Sbjct: 1199 KVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLL--KAKYAQDEHLITFFV 1256

Query: 263  PATG--AHNYTLYFMSDAYMGCDQEYKFS 289
            P        Y +  +SD ++ C+ +   S
Sbjct: 1257 PVFEPLPPQYFIRVVSDRWLSCETQLPVS 1285


>gi|239745928 PREDICTED: hypothetical protein XP_002343618 [Homo
           sapiens]
          Length = 299

 Score =  492 bits (1267), Expect = e-139
 Identities = 264/336 (78%), Positives = 264/336 (78%), Gaps = 71/336 (21%)

Query: 1   MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGA--------------------------- 33
           MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGA                           
Sbjct: 1   MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGARKAEKVIHGSKQNALCLRGPRTKVRGL 60

Query: 34  -------TGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS 86
                   GYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS
Sbjct: 61  IEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS 120

Query: 87  AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH 146
           AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH
Sbjct: 121 AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH 180

Query: 147 FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITDEVVDKDSIRSGGPAVVLVQ 206
           FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITD                   
Sbjct: 181 FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITD------------------- 221

Query: 207 LEREEEVTGPVIAPLFPQKREEGWWVVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATG 266
                             KREEGWWVVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATG
Sbjct: 222 ------------------KREEGWWVVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATG 263

Query: 267 AHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD 302
           AHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD
Sbjct: 264 AHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD 299


>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
            partial [Homo sapiens]
          Length = 1700

 Score =  471 bits (1212), Expect = e-133
 Identities = 245/311 (78%), Positives = 262/311 (84%), Gaps = 18/311 (5%)

Query: 10   FLKLKTFGFSIQEGTRVG---ERKRGATGYENIPIQHHEENFLRQLAQKVPDKLNNPKFN 66
            +  ++ F  S+   T+V    E    A  YENIPI+HHE+N LRQLAQKVP KLNNPKFN
Sbjct: 1390 YTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFN 1449

Query: 67   DPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMEL 126
            DPH+KTNLLLQAHLSRMQLSAELQSDTEEILSKA+RL+QACVDVLSSNGWLS ALAAMEL
Sbjct: 1450 DPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMEL 1509

Query: 127  AQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQIT 186
            AQMVTQAMWS+DSYL++LP F S   KRCTDKGV+SVFDIMEMEDEERN +LQLTDSQI 
Sbjct: 1510 AQMVTQAMWSEDSYLRRLPPFPSGLFKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIA 1569

Query: 187  D---------------EVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPLFPQKREEGWW 231
            D               EVVDKDSIRSGGP VVLVQLEREEEVTGPVIAPLFPQKREEGWW
Sbjct: 1570 DVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWW 1629

Query: 232  VVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMD 291
            VVIGD KSNSLISIKRL LQQKAKVKLDFVAPATG  + TLYFMSDAYMGCDQEYKFS+D
Sbjct: 1630 VVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGGRHNTLYFMSDAYMGCDQEYKFSVD 1689

Query: 292  VKEAETDSDSD 302
            VKEAETDSDSD
Sbjct: 1690 VKEAETDSDSD 1700



 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 22/269 (8%)

Query: 36  YENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSA-ELQSDTE 94
           ++NI ++  E+  L++L ++VP  +      +P  K N+LLQA +S+++L    L +D  
Sbjct: 588 FKNITVREEEKLELQKLLERVPIPVKE-SIEEPSAKINVLLQAFISQLKLEGFALMADMV 646

Query: 95  EILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKR 154
            +   A RL++A  +++ + GW       + L +M+ + MW     L+Q      E +K+
Sbjct: 647 YVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKK 706

Query: 155 CTDKGVKSVFDIMEMEDEERNTILQLTDSQITDEVVDK--DSIRSGGPAVVLVQLEREEE 212
              K     F    + D   N I +L       + + K          +V L  + R   
Sbjct: 707 IEKKN----FPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTL 762

Query: 213 VTGPVIAPLFPQKRE-----EGWWVVIGDTKSNSLISIKRLILQQKAKVKLD-----FVA 262
                I P F    +     E +W+++ D  S  ++  +  +L  KAK   D     F  
Sbjct: 763 KVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLL--KAKYAQDEHLITFFV 820

Query: 263 PATG--AHNYTLYFMSDAYMGCDQEYKFS 289
           P        Y +  +SD ++ C+ +   S
Sbjct: 821 PVFEPLPPQYFIRVVSDRWLSCETQLPVS 849


>gi|76880486 activating signal cointegrator 1 complex subunit 3
            isoform a [Homo sapiens]
          Length = 2202

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 49/121 (40%), Positives = 76/121 (62%), Gaps = 1/121 (0%)

Query: 33   ATGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSA-ELQS 91
            A  Y ++P++H+E++   +LA+ +P + N   F+ PH K +LLLQAHLSR  L   +  +
Sbjct: 1852 AEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDT 1911

Query: 92   DTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEH 151
            DT+ +L +A+R+ QA +DV ++ GWL + L    L QMV Q  W KDS L  LP+  + H
Sbjct: 1912 DTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHH 1971

Query: 152  I 152
            +
Sbjct: 1972 L 1972



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 218  IAPLFPQKREEGWWVVIGDTKSNSLISIKRL-ILQQKAKVKLDFVAPAT-GAHNYTLYFM 275
            + P FP+ ++EGW++++G+     LI++KR+  ++      L F  P   G + YTLYFM
Sbjct: 2103 VTPRFPKSKDEGWFLILGEVDKRELIALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFM 2162

Query: 276  SDAYMGCDQEYKFSMDVKEA 295
            SD Y+G DQ+Y   ++V +A
Sbjct: 2163 SDCYLGLDQQYDIYLNVTQA 2182



 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 55/274 (20%), Positives = 117/274 (42%), Gaps = 34/274 (12%)

Query: 33   ATGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQL-SAELQS 91
            A  ++ I ++  E   L  L     +        + + K N+LLQ ++SR ++ S  L S
Sbjct: 1018 AEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLIS 1077

Query: 92   DTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEH 151
            D+  +   A R+V+A  ++     W +     + L++++ + +W   S L+Q    +  H
Sbjct: 1078 DSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQF-SILPPH 1136

Query: 152  IKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQI--------TDEVVDKDSIRSGGPAVV 203
            I    ++   +V  + +M  +E   IL   +  +           V+ + SI+     V+
Sbjct: 1137 ILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVL 1196

Query: 204  LVQLE------REEEVTGPVIAPLFPQKREEGWWVVIGDTKSNSL------ISIKRLILQ 251
             V L         ++V G V  P         WW+ + D  ++ +      +++K+ ++ 
Sbjct: 1197 RVTLSIYADFTWNDQVHGTVGEP---------WWIWVEDPTNDHIYHSEYFLALKKQVIS 1247

Query: 252  QKAKVKLDFVAPATG--AHNYTLYFMSDAYMGCD 283
            ++A++ L F  P        Y +  +SD ++G +
Sbjct: 1248 KEAQL-LVFTIPIFEPLPSQYYIRAVSDRWLGAE 1280


>gi|6005872 SEC63-like protein [Homo sapiens]
          Length = 760

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 170 EDEERNTILQLTDSQITDEVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPLFPQKREEG 229
           +  +R++  +  + Q  D+  +   ++          LE + ++T PV +  FP++++E 
Sbjct: 591 DGSDRDSDREQDEKQNKDDEAEWQELQQSIQRKERALLETKSKITHPVYSLYFPEEKQEW 650

Query: 230 WWVVIGDTKSNSLISIKRLI--LQQKAKVKLDFVAPA-TGAHNYTLYFMSDAYMGCDQEY 286
           WW+ I D K  +LIS+   +  L+   +V+L F AP   G + YT++  SD+YMG DQ  
Sbjct: 651 WWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYMGLDQIK 710

Query: 287 KFSMDVKEAE 296
              ++V EA+
Sbjct: 711 PLKLEVHEAK 720



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 39/191 (20%)

Query: 59  KLNNPKFNDPH-IKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQACVDVLSS---- 113
           K N P    P+ +K  +LL +HL+RM++   L+ D + +L K   L+Q  V+V+      
Sbjct: 287 KKNEPPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIVM 346

Query: 114 ----------NGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDK---GV 160
                        L+S    M+L+QM  Q +    S L QLPH   ++++R ++     +
Sbjct: 347 ARNREEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKI 406

Query: 161 KSVFDIMEMEDEERNTILQLTDSQITDEVV---------------------DKDSIRSGG 199
           K++ D++ +++ +R+T+L   + +  +EV+                     D ++I  G 
Sbjct: 407 KTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGS 466

Query: 200 PAVVLVQLERE 210
              VLV+L R+
Sbjct: 467 LVTVLVKLTRQ 477


>gi|66933016 inosine monophosphate dehydrogenase 2 [Homo sapiens]
          Length = 514

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 66  NDPHIKTNLLLQAHLSRMQ--LSAELQSDTEEILSKAVRL--------VQACVDVLSSNG 115
           N  HI   L L A    M   L+A  ++  E   S  +RL        + A    LSS  
Sbjct: 369 NVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQN 428

Query: 116 WLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEM 169
              S    +++AQ V+ A+  K S  K +P+ I+     C D G KS+  +  M
Sbjct: 429 RYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAM 482


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 146  HFISEHIKRCTDKGVKSVFDIMEMEDEERNTI-LQLTDSQITDEVVDKDSIRSGGPAVVL 204
            H+++ H     D+GV SV   +E   E R+T  L LT  +I  E+   D   S  P   +
Sbjct: 8888 HYMTIHNVTPDDEGVYSVIARLEPRGEARSTAELYLTTKEIKLELKPPDIPDSRVPIPTM 8947

Query: 205  VQLEREEEVTGPVIAPLFP 223
                   E   PV+AP  P
Sbjct: 8948 PIRAVPPEEIPPVVAPPIP 8966


>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
          Length = 625

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 45  EENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLV 104
           EE F R  AQ +  + NN + +D   K  + L +   ++    +  S  ++ LSK+ +  
Sbjct: 7   EEEFQRMQAQLLELRTNNYQLSDELRKNGVELTSLRQKVAYLDKEFSKAQKALSKSKKAQ 66

Query: 105 QACVDVLSSNGWLSSALAAME----LAQMVTQAMWSKDSYLKQLPHF 147
           +  V +LS N  L + L + E    L      A +SK+ Y K+   F
Sbjct: 67  EVEV-LLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKERYGKEAGKF 112


>gi|112382372 guanylate binding protein 3 [Homo sapiens]
          Length = 595

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 14/129 (10%)

Query: 54  QKVPDKLNNPKFNDPH--IKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQA-CVDV 110
           QK+ D L    + +P   I+   +LQ +L   +   +    T++IL++  + ++  CV  
Sbjct: 436 QKLQD-LEKKYYEEPRKGIQAEEILQTYLKSKESVTDAILQTDQILTEKEKEIEVECV-- 492

Query: 111 LSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEME 170
                    A +A   A+MV +        +++      EH+K+ T+K  +    ++E +
Sbjct: 493 --------KAESAQASAKMVEEMQIKYQQMMEEKEKSYQEHVKQLTEKMERERAQLLEEQ 544

Query: 171 DEERNTILQ 179
           ++   + LQ
Sbjct: 545 EKTLTSKLQ 553


>gi|166706903 guanylate binding protein 1, interferon-inducible,
           67kDa [Homo sapiens]
          Length = 592

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 50  RQLAQKVPDKLNNPKFNDPH--IKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQAC 107
           R   QK+ D L    + +P   I+   +LQ +L   +   +    T++ L++  + ++  
Sbjct: 434 RLFVQKLQD-LKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEV- 491

Query: 108 VDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIM 167
                       A +A   A+M+ +     +  ++Q      EH+K+ T+K       + 
Sbjct: 492 --------ERVKAESAQASAKMLQEMQRKNEQMMEQKERSYQEHLKQLTEKMEND--RVQ 541

Query: 168 EMEDEERNTILQLTD-SQITDEVVDKDS 194
            ++++ER   L+L +  Q+  E   K+S
Sbjct: 542 LLKEQERTLALKLQEQEQLLKEGFQKES 569


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform
           2 [Homo sapiens]
          Length = 8749

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 23/132 (17%)

Query: 41  IQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEI---- 96
           I++     + QL Q     + N KF + +  T  +L+   + M + A+   +  E     
Sbjct: 535 IKYGRRESVEQLLQNYVSFIENSKFFEQYEVTYQILK-QTAEMYVKADGSVEEAENVMKF 593

Query: 97  ----------LSKAVRLVQACVDVLSSNGW------LSSALAAMELAQ-MVTQAMWSKDS 139
                     LS  VR V++ ++ + SN W      ++S  A +E A+ M+ Q+  +K  
Sbjct: 594 MNETTAQWRNLSVEVRSVRSMLEEVISN-WDRYGNTVASLQAWLEDAEKMLNQSENAKKD 652

Query: 140 YLKQLPHFISEH 151
           + + LPH+I +H
Sbjct: 653 FFRNLPHWIQQH 664


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform
           1 [Homo sapiens]
          Length = 8797

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 23/132 (17%)

Query: 41  IQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEI---- 96
           I++     + QL Q     + N KF + +  T  +L+   + M + A+   +  E     
Sbjct: 528 IKYGRRESVEQLLQNYVSFIENSKFFEQYEVTYQILK-QTAEMYVKADGSVEEAENVMKF 586

Query: 97  ----------LSKAVRLVQACVDVLSSNGW------LSSALAAMELAQ-MVTQAMWSKDS 139
                     LS  VR V++ ++ + SN W      ++S  A +E A+ M+ Q+  +K  
Sbjct: 587 MNETTAQWRNLSVEVRSVRSMLEEVISN-WDRYGNTVASLQAWLEDAEKMLNQSENAKKD 645

Query: 140 YLKQLPHFISEH 151
           + + LPH+I +H
Sbjct: 646 FFRNLPHWIQQH 657


>gi|87299628 biorientation of chromosomes in cell division 1-like
            [Homo sapiens]
          Length = 3051

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 156  TDKGVKSVFDIMEMEDEERNTILQLTDS----QITDEVVDKDSIRS 197
            ++ GV++VF++ + +D   N   Q  DS    Q T   V KD +R+
Sbjct: 1124 SEPGVENVFEVSKTQDNRNNNSQQDIDSENMKQKTSATVQKDELRT 1169


>gi|4505069 MAX dimerization protein 1 [Homo sapiens]
          Length = 221

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 151 HIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITDEVVDKDSIRS--------GGPAV 202
           HIK+  D   K+V  I +++ E+R+   QL   ++  E +  DSI S             
Sbjct: 104 HIKKLEDCDRKAVHQIDQLQREQRHLKRQL--EKLGIERIRMDSIGSTVSSERSDSDREE 161

Query: 203 VLVQLEREEEVTGPV--IAPLFPQKREEGWWVVIGDTKSNSLISIKRLILQQKAKVKL 258
           + V +E  + +TG +   +       E G    +G  +  S  SIKR+ LQ   K  L
Sbjct: 162 IDVDVESTDYLTGDLDWSSSSVSDSDERGSMQSLGSDEGYSSTSIKRIKLQDSHKACL 219


>gi|62243696 stromal antigen 1 [Homo sapiens]
          Length = 1258

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 138 DSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITDEVVDK 192
           D+ LKQ+   + +H++    +     + I+  E+      + +  SQ+ DE VD+
Sbjct: 614 DALLKQIKFVVEKHVESDVLEACSKTYSILCSEEYTIQNRVDIARSQLIDEFVDR 668


>gi|225579152 insulin-like growth factor binding protein, acid
           labile subunit isoform 1 precursor [Homo sapiens]
          Length = 643

 Score = 28.1 bits (61), Expect = 10.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 7   PSPFLKLKTFGFSIQEGTRVGERKRGAT-GYENIPIQHHEENFLRQLA 53
           P+ F  L + GF   +G ++G  +  A  G EN+   H E N LR LA
Sbjct: 129 PAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLA 176


>gi|4826772 insulin-like growth factor binding protein, acid labile
           subunit isoform 2 precursor [Homo sapiens]
          Length = 605

 Score = 28.1 bits (61), Expect = 10.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 7   PSPFLKLKTFGFSIQEGTRVGERKRGAT-GYENIPIQHHEENFLRQLA 53
           P+ F  L + GF   +G ++G  +  A  G EN+   H E N LR LA
Sbjct: 91  PAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLA 138


>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
            sapiens]
          Length = 2542

 Score = 28.1 bits (61), Expect = 10.0
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 166  IMEMEDEERNTILQLTDSQITDEVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPLFPQK 225
            ++  ++E+ +T    T +++  EV   +S+ +    V L       ++   + +P   QK
Sbjct: 1629 LLHSQEEKTSTATSKTQTRLEGEVTP-NSLSTSYKTVSLPLSSPNIKLN--LTSPKRGQK 1685

Query: 226  REEGWWVVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATGAH 268
            REEGW  V+  +K  S+ +     +  +    +  +   TGAH
Sbjct: 1686 REEGWKEVVRRSKKLSVPASVVSRIMGRGGCNITAIQDVTGAH 1728


>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
          Length = 2617

 Score = 28.1 bits (61), Expect = 10.0
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 166  IMEMEDEERNTILQLTDSQITDEVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPLFPQK 225
            ++  ++E+ +T    T +++  EV   +S+ +    V L       ++   + +P   QK
Sbjct: 1629 LLHSQEEKTSTATSKTQTRLEGEVTP-NSLSTSYKTVSLPLSSPNIKLN--LTSPKRGQK 1685

Query: 226  REEGWWVVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATGAH 268
            REEGW  V+  +K  S+ +     +  +    +  +   TGAH
Sbjct: 1686 REEGWKEVVRRSKKLSVPASVVSRIMGRGGCNITAIQDVTGAH 1728


>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
            sapiens]
          Length = 2168

 Score = 28.1 bits (61), Expect = 10.0
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 17/94 (18%)

Query: 180  LTDSQITDEVVDKDSIRSGGPAVVLVQLEREEEVTGPVIAPL---FPQKREEGWWVVIGD 236
            +  S+    V   +   S  PA V        EV  PV  P     P++ + GWW +I  
Sbjct: 1673 VASSKSESPVPQNEKATSAQPAAV--------EVAKPVDFPSPKPIPEEMQFGWWRIIDP 1724

Query: 237  TKSNSLISIKRL------ILQQKAKVKLDFVAPA 264
                +L+ +  L       LQ++ +  LD++  A
Sbjct: 1725 EDLKALLKVLHLRGIREKALQKQIQKHLDYITQA 1758


>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
          Length = 2603

 Score = 28.1 bits (61), Expect = 10.0
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 217  VIAPLFPQKREEGWWVVIGDTKSNSLIS--IKRLILQQKAKVKLDFVAPATGAH 268
            V +P   QKREEGW  V+  +K  S+ S  I R+I   +    ++ +   TGAH
Sbjct: 1707 VASPKRGQKREEGWKEVVRRSKKVSVPSTVISRVI--GRGGCNINAIREFTGAH 1758


>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sapiens]
          Length = 2352

 Score = 28.1 bits (61), Expect = 10.0
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 217  VIAPLFPQKREEGWWVVIGDTKSNSLIS--IKRLILQQKAKVKLDFVAPATGAH 268
            V +P   QKREEGW  V+  +K  S+ S  I R+I   +    ++ +   TGAH
Sbjct: 1456 VASPKRGQKREEGWKEVVRRSKKVSVPSTVISRVI--GRGGCNINAIREFTGAH 1507


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,548,646
Number of Sequences: 37866
Number of extensions: 428103
Number of successful extensions: 1141
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 36
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.