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Search of human proteins with 239756806
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756806 PREDICTED: hypothetical protein [Homo sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756806 PREDICTED: hypothetical protein [Homo sapiens] 437 e-123
gi|239751296 PREDICTED: hypothetical protein XP_002347798 [Homo ... 437 e-123
gi|239745793 PREDICTED: hypothetical protein XP_002343590 [Homo ... 437 e-123
gi|239752774 PREDICTED: hypothetical protein [Homo sapiens] 61 8e-10
gi|239747292 PREDICTED: hypothetical protein XP_002346413 [Homo ... 61 8e-10
gi|239741116 PREDICTED: hypothetical protein XP_002342113 [Homo ... 61 8e-10
gi|60097902 filaggrin [Homo sapiens] 35 0.061
gi|126352608 elastin isoform e precursor [Homo sapiens] 33 0.14
gi|126352446 elastin isoform d precursor [Homo sapiens] 33 0.14
gi|126352322 elastin isoform c precursor [Homo sapiens] 33 0.14
gi|126352700 elastin isoform b precursor [Homo sapiens] 33 0.14
gi|126352440 elastin isoform a precursor [Homo sapiens] 33 0.14
gi|239756085 PREDICTED: hypothetical protein [Homo sapiens] 32 0.30
gi|239750614 PREDICTED: hypothetical protein [Homo sapiens] 32 0.30
gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo ... 32 0.30
gi|23510400 pantothenate kinase 1 isoform alpha [Homo sapiens] 32 0.30
gi|124430752 kinesin family member 26B [Homo sapiens] 32 0.30
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 32 0.51
gi|239757714 PREDICTED: hypothetical protein XP_002345529 [Homo ... 31 0.67
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 31 0.67
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ... 31 0.67
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 31 0.67
gi|7657138 golgi integral membrane protein 4 [Homo sapiens] 31 0.67
gi|203096856 kinesin family member 7 [Homo sapiens] 31 0.67
gi|150418009 transforming, acidic coiled-coil containing protein... 31 0.67
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ... 31 0.88
gi|169216359 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169216600 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|16757970 niban protein isoform 2 [Homo sapiens] 30 1.1
gi|29550850 golgi membrane protein 1 [Homo sapiens] 30 1.5
>gi|239756806 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 437 bits (1124), Expect = e-123
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR 60
MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR
Sbjct: 1 MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR 60
Query: 61 WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR 120
WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR
Sbjct: 61 WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR 120
Query: 121 VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA 180
VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA
Sbjct: 121 VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA 180
Query: 181 GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG
Sbjct: 181 GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
>gi|239751296 PREDICTED: hypothetical protein XP_002347798 [Homo
sapiens]
Length = 211
Score = 437 bits (1124), Expect = e-123
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR 60
MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR
Sbjct: 1 MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR 60
Query: 61 WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR 120
WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR
Sbjct: 61 WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR 120
Query: 121 VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA 180
VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA
Sbjct: 121 VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA 180
Query: 181 GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG
Sbjct: 181 GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
>gi|239745793 PREDICTED: hypothetical protein XP_002343590 [Homo
sapiens]
Length = 211
Score = 437 bits (1124), Expect = e-123
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR 60
MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR
Sbjct: 1 MAGNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRR 60
Query: 61 WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR 120
WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR
Sbjct: 61 WRGPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQR 120
Query: 121 VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA 180
VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA
Sbjct: 121 VAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDA 180
Query: 181 GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG
Sbjct: 181 GRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
>gi|239752774 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 60.8 bits (146), Expect = 8e-10
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 66 LAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQRVAHEL 125
LAV A LL V V D+Q RG ++ +++ PEA VGD E VVA + A L VA ++
Sbjct: 184 LAVPALPLLT--VGHVQDDQQRGACDEDELQGPEADVGDGEVVVVADVGAAGLLGVAVKV 241
Query: 126 LLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQ 165
LLL+ H +Q ED+H QP+A + +H Q
Sbjct: 242 LLLIPPHALCSHHVYQHPEDEHHGQPDAPERCGVLVHTAQ 281
>gi|239747292 PREDICTED: hypothetical protein XP_002346413 [Homo
sapiens]
Length = 281
Score = 60.8 bits (146), Expect = 8e-10
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 66 LAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQRVAHEL 125
LAV A LL V V D+Q RG ++ +++ PEA VGD E VVA + A L VA ++
Sbjct: 184 LAVPALPLLT--VGHVQDDQQRGACDEDELQGPEADVGDGEVVVVADVGAAGLLGVAVKV 241
Query: 126 LLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQ 165
LLL+ H +Q ED+H QP+A + +H Q
Sbjct: 242 LLLIPPHALCSHHVYQHPEDEHHGQPDAPERCGVLVHTAQ 281
>gi|239741116 PREDICTED: hypothetical protein XP_002342113 [Homo
sapiens]
Length = 281
Score = 60.8 bits (146), Expect = 8e-10
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 66 LAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQRVAHEL 125
LAV A LL V V D+Q RG ++ +++ PEA VGD E VVA + A L VA ++
Sbjct: 184 LAVPALPLLT--VGHVQDDQQRGACDEDELQGPEADVGDGEVVVVADVGAAGLLGVAVKV 241
Query: 126 LLLVLEHGAAHRGQHQDAEDQHDHQPEAAHERRLQLHGVQ 165
LLL+ H +Q ED+H QP+A + +H Q
Sbjct: 242 LLLIPPHALCSHHVYQHPEDEHHGQPDAPERCGVLVHTAQ 281
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 34.7 bits (78), Expect = 0.061
Identities = 52/215 (24%), Positives = 82/215 (38%), Gaps = 41/215 (19%)
Query: 13 GAAGSHWEAV--RGKCDAARGPSPQRVSCRG-RSRDSSGGSSFRLLRCGRRWRGPALAVH 69
G +GSH +G+ DA+RG S R + R R+ + SG SS + R + H
Sbjct: 3134 GHSGSHHSHTTSQGRSDASRGQSGSRSASRTTRNEEQSGDSSRHSVS-----RHHEASTH 3188
Query: 70 A-ARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQRVAHELLLL 128
A + V G + R RR+ V + G E + + +R R + +
Sbjct: 3189 ADISRHSQAVQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHRGSVQEQS- 3247
Query: 129 VLEHGAAHRGQHQDAEDQHDH-------------------QPEAAHERRL----QLHGVQ 165
HG+ H H + H H Q ++HE+ + HG +
Sbjct: 3248 --RHGSRHPRSHHEDRAGHGHSADRSRQSGTRHAETSSGGQAASSHEQARSSPGERHGSR 3305
Query: 166 QR-----AQERPLPHG-AGDAGRGVRGWGKSGTPA 194
+ ++ +P G A A R R WG SG+ A
Sbjct: 3306 HQQSADSSRHSGIPRGQASSAVRDSRHWGSSGSQA 3340
Score = 34.3 bits (77), Expect = 0.079
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 10/147 (6%)
Query: 13 GAAGSHWEAV--RGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRRWRGPALAVHA 70
G +GSH +G+ DA+RG S R + R + G R G R +
Sbjct: 2810 GHSGSHHSHTTSQGRSDASRGQSGSRSASRTTRNEEQSGDGSR--HSGSRHHEASTHADI 2867
Query: 71 ARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVV-AGLATARLQRVAHELLLLV 129
+R V G + R RR+ V + G E + +G A+ A E L
Sbjct: 2868 SRHSQA-VQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHHGSAQEQL--- 2923
Query: 130 LEHGAAHRGQHQDAEDQHDHQPEAAHE 156
G+ H HQ+ H H +++ +
Sbjct: 2924 -RDGSRHPRSHQEDRAGHGHSADSSRQ 2949
Score = 30.8 bits (68), Expect = 0.88
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 24/180 (13%)
Query: 13 GAAGSHWEAV--RGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRRWRGPALAVHA 70
G +GSH +G+ DA+ G S R + R +D G R G R A +
Sbjct: 1189 GHSGSHHSHTTSQGRSDASHGQSGSRSASRQTRKDKQSGDGSR--HSGSRHHEAASWADS 1246
Query: 71 ARLLACPVH---GVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQRVAHELLL 127
+R G +H+G QD + E D E ++G A+ + E
Sbjct: 1247 SRHSQVGQEQSSGSRTSRHQGSSVSQD-SDSERHSDDSER--LSGSASRNHHGSSREQS- 1302
Query: 128 LVLEHGAAHRGQHQDAEDQHDHQPEAA-----HERRLQLHG--VQQRAQERPLP---HGA 177
G+ H G HQ+ H H +++ H HG V Q R P HG+
Sbjct: 1303 ---RDGSRHPGFHQEDRASHGHSADSSRQSGTHHTESSSHGQAVSSHEQARSSPGERHGS 1359
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 33.5 bits (75), Expect = 0.14
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 161 LHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
L GV A +P G G A G+ G G G P P P+G P L G
Sbjct: 166 LPGVPTGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGG 216
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 33.5 bits (75), Expect = 0.14
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 161 LHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
L GV A +P G G A G+ G G G P P P+G P L G
Sbjct: 171 LPGVPTGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGG 221
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 33.5 bits (75), Expect = 0.14
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 161 LHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
L GV A +P G G A G+ G G G P P P+G P L G
Sbjct: 171 LPGVPTGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGG 221
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 33.5 bits (75), Expect = 0.14
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 161 LHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
L GV A +P G G A G+ G G G P P P+G P L G
Sbjct: 156 LPGVPTGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGG 206
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 33.5 bits (75), Expect = 0.14
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 161 LHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
L GV A +P G G A G+ G G G P P P+G P L G
Sbjct: 166 LPGVPTGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGG 216
>gi|239756085 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 32.3 bits (72), Expect = 0.30
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 137 RGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPS 196
RG + +D+ + A RL G+ QRA R P G A G +G G G+ AP
Sbjct: 66 RGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAG--GSLAPY 123
Query: 197 KPIGVGSVGPSLTSG 211
V GP +SG
Sbjct: 124 SSARVRKSGPQSSSG 138
>gi|239750614 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 32.3 bits (72), Expect = 0.30
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 137 RGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPS 196
RG + +D+ + A RL G+ QRA R P G A G +G G G+ AP
Sbjct: 66 RGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAG--GSLAPY 123
Query: 197 KPIGVGSVGPSLTSG 211
V GP +SG
Sbjct: 124 SSARVRKSGPQSSSG 138
>gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo
sapiens]
Length = 165
Score = 32.3 bits (72), Expect = 0.30
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 137 RGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPS 196
RG + +D+ + A RL G+ QRA R P G A G +G G G+ AP
Sbjct: 66 RGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAG--GSLAPY 123
Query: 197 KPIGVGSVGPSLTSG 211
V GP +SG
Sbjct: 124 SSARVRKSGPQSSSG 138
>gi|23510400 pantothenate kinase 1 isoform alpha [Homo sapiens]
Length = 598
Score = 32.3 bits (72), Expect = 0.30
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 163 GVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPSKPIGV---GSVGPS 207
G ++ A E P G AG G GWG +G P + GV G+VGP+
Sbjct: 23 GGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPA 70
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 32.3 bits (72), Expect = 0.30
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 165 QQRAQERPLPHGAGDAGRGVRGWGKSGTPAPSKPIGVGSVGPSLTSG 211
+ RA RP P GAG A G SGTP+P G G+ PS +G
Sbjct: 47 ESRAGSRPTPEGAGSA------LGSSGTPSP----GSGTSSPSSFTG 83
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 31.6 bits (70), Expect = 0.51
Identities = 57/199 (28%), Positives = 73/199 (36%), Gaps = 25/199 (12%)
Query: 3 GNAQPARPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSFRLLRCGRRWR 62
G A P +P P + S W+A SP S R G L R
Sbjct: 17 GGAAPPQPQPRSPLSPWQA-----------SPPATSPRAWQLSRGPGGRSPLPPAPS--R 63
Query: 63 GPALAVHAARLLACPVHGVDDEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQRVA 122
GPA + AA LL H V +Q Q EA + D G V L L A
Sbjct: 64 GPATCMGAALLLP-EAHDVLGQQDLILLLQ------EAHLVDVVGEAVIQLLQLHLLVGA 116
Query: 123 HELLLLVLEHGAAHRGQHQDAEDQH-DHQPEAAHERRLQ-LHGVQQRAQERPLPHGAGDA 180
L L V G R H+ ++ H H AH R + +H + R E GA A
Sbjct: 117 GVLELGV--DGVGQREVHRVLQEPHPGHAAPQAHGRGARGIHAARGRGVEAAAGAGAQRA 174
Query: 181 GRGVRGWGKSG-TPAPSKP 198
+ V G+S PA ++P
Sbjct: 175 AQAVGAGGRSHVAPAGARP 193
>gi|239757714 PREDICTED: hypothetical protein XP_002345529 [Homo
sapiens]
Length = 764
Score = 31.2 bits (69), Expect = 0.67
Identities = 37/116 (31%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 97 EPEAVVGDREGAVVAGLATARLQRVAHELLLLVLEH-GAAHRGQHQDAEDQHDHQ----- 150
E E V R VVA QR+ L L H GA H G A D DH
Sbjct: 261 EAELAVAHRNDRVVA-----EQQRLRPLLGPRHLGHDGANHEGVDDAAHDGLDHHSDDCQ 315
Query: 151 -------PEAAHERRLQLHGVQQRAQERPLPHGAGDAG-RGVRGWGKSGTPAPSKP 198
PE + RL+LH Q+ QE H AG G RG + P P
Sbjct: 316 RALLCHAPEPIADGRLRLHREQEGTQEAVHVHDAGLGGHRGCSATTRRRAPRRRHP 371
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 31.2 bits (69), Expect = 0.67
Identities = 37/116 (31%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 97 EPEAVVGDREGAVVAGLATARLQRVAHELLLLVLEH-GAAHRGQHQDAEDQHDHQ----- 150
E E V R VVA QR+ L L H GA H G A D DH
Sbjct: 261 EAELAVAHRNDRVVA-----EQQRLRPLLGPRHLGHDGANHEGVDDAAHDGLDHHSDDCQ 315
Query: 151 -------PEAAHERRLQLHGVQQRAQERPLPHGAGDAG-RGVRGWGKSGTPAPSKP 198
PE + RL+LH Q+ QE H AG G RG + P P
Sbjct: 316 RALLCHAPEPIADGRLRLHREQEGTQEAVHVHDAGLGGHRGCSATTRRRAPRRRHP 371
>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
[Homo sapiens]
Length = 730
Score = 31.2 bits (69), Expect = 0.67
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 170 ERP--LPHGAGDAGRGVRGWGKSGTPAP----SKPIGVGSVGPS 207
ERP LPHG G G G+ G G P +K IG+G++GP+
Sbjct: 292 ERPQQLPHGLGGIGMGL---GPGGQPIDANHLNKGIGMGNIGPA 332
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 31.2 bits (69), Expect = 0.67
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 170 ERP--LPHGAGDAGRGVRGWGKSGTPAP----SKPIGVGSVGPS 207
ERP LPHG G G G+ G G P +K IG+G++GP+
Sbjct: 253 ERPQQLPHGLGGIGMGL---GPGGQPIDANHLNKGIGMGNIGPA 293
>gi|7657138 golgi integral membrane protein 4 [Homo sapiens]
Length = 696
Score = 31.2 bits (69), Expect = 0.67
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 83 DEQHRGRREQQDVEEPEAVVGDREGAVVAGLATARLQRVAHELLLLV------LEHGAAH 136
+E+H E+QD E E ++ G A A + A ++ LE
Sbjct: 358 EEEHDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRLA 417
Query: 137 RGQHQDAEDQHDHQPEAAHERRLQLHGVQQRAQER 171
Q ++A+ +HQ EA H++RLQ H ++Q+ Q++
Sbjct: 418 VQQVEEAQQLREHQ-EALHQQRLQGHLLRQQEQQQ 451
>gi|203096856 kinesin family member 7 [Homo sapiens]
Length = 1343
Score = 31.2 bits (69), Expect = 0.67
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 98 PEAVVGDREGAVVAGLATARLQRVAHELLLLVLEHGAAHRGQHQDAEDQHDHQPEAAHER 157
P + GD G+ G + ELL V G+ ++ E++ + H R
Sbjct: 581 PACLPGDEVGSEQRGEQVTNGREAGAELLTEVNRLGSGSSAASEEEEEEEEPPRRTLHLR 640
Query: 158 RLQLHGVQQRAQERP--LPHGAG 178
R ++ QRA RP LP G
Sbjct: 641 RNRISNCSQRAGARPGSLPERKG 663
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 31.2 bits (69), Expect = 0.67
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 137 RGQHQDAEDQHDHQPEAAHER--RLQLHGVQQRAQERPLPHGAGDAGRGVRG 186
RG+H + E H+ QP + Q H VQ A PLP ++ RG G
Sbjct: 497 RGEHLNTEQSHEVQPGVPPPPLPKEQSHEVQPGAPPPPLPKAPSESARGPPG 548
>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
sapiens]
Length = 245
Score = 30.8 bits (68), Expect = 0.88
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 5 AQPARPAPGAAGSHWEAVRG---------KCDAARGPSPQRVSCRGRSRDSSGGSSFRLL 55
A+P P PG GSHW+ G GP +R + R GG
Sbjct: 133 ARPRPPGPGGRGSHWKIQPGVQRLPRPTPSAQPRPGPPERRRASRPLIGCGRGGGGTWRR 192
Query: 56 RCGRRWRGP 64
RWR P
Sbjct: 193 AADSRWRRP 201
>gi|169216359 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 9 RPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSF-RLLRCGRRWRGPALA 67
RPAP RG A G S + + S G S F +L CG WRGP
Sbjct: 117 RPAPRGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPAL 176
Query: 68 VHAAR 72
A R
Sbjct: 177 FCACR 181
Score = 27.3 bits (59), Expect = 9.7
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 170 ERPLPHGAGDAGRGVRGW-----GKSGTP----APSKPIGVGSVGPSL 208
ERP P G G RGW G S P AP+ P SV PS+
Sbjct: 116 ERPAPRGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSM 163
>gi|169216600 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 9 RPAPGAAGSHWEAVRGKCDAARGPSPQRVSCRGRSRDSSGGSSF-RLLRCGRRWRGPALA 67
RPAP RG A G S + + S G S F +L CG WRGP
Sbjct: 117 RPAPRGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPAL 176
Query: 68 VHAAR 72
A R
Sbjct: 177 FCACR 181
Score = 27.3 bits (59), Expect = 9.7
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 170 ERPLPHGAGDAGRGVRGW-----GKSGTP----APSKPIGVGSVGPSL 208
ERP P G G RGW G S P AP+ P SV PS+
Sbjct: 116 ERPAPRGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSM 163
>gi|16757970 niban protein isoform 2 [Homo sapiens]
Length = 928
Score = 30.4 bits (67), Expect = 1.1
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 91 EQQDVEEPEAVVGDREGAVVAGLATARLQRVAHELLLLVLE-HGAAHRGQHQDAEDQHD- 148
E+ EEPE + + L TA ++ ++ + +G +H Q + E++ +
Sbjct: 693 EEPAQEEPEPITASGSLKALRKLLTASVEVPVDSAPVMEEDTNGESHVPQENEEEEEKEP 752
Query: 149 HQPEAAHERRLQLHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPAPSKPIGVGSVGP 206
Q A H + V +R + P P G+ G G +P S + +GP
Sbjct: 753 SQAAAIHPDNCEESEVSEREAQPPCPEAHGEELGGFPEVGSPASPPASGGLTEEPLGP 810
>gi|29550850 golgi membrane protein 1 [Homo sapiens]
Length = 401
Score = 30.0 bits (66), Expect = 1.5
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 155 HERRLQLHGV---QQRAQERPLPHGAGDAGRG-VRGWGKSGTPAPSKPIGVGS 203
+++R QL + Q R Q LPH G+G V G KS TPAPS + + S
Sbjct: 194 NDQRQQLQALSEPQPRLQAAGLPHTEVPQGKGNVLGNSKSQTPAPSSEVVLDS 246
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,068,992
Number of Sequences: 37866
Number of extensions: 518640
Number of successful extensions: 2562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 2471
Number of HSP's gapped (non-prelim): 179
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.