Guide to the Human Genome
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Name: LOC100290301 Sequence: fasta or formatted (281aa) NCBI GI: 239747292
Description:

PREDICTED: hypothetical protein XP_002346413

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         31           2
 C cysteine            2.1          6           2
 D aspartate           6.8         19           2
 E glutamate           8.2         23           4
 F phenylalanine       1.4          4           1
 G glycine            11.4         32           3
 H histidine           6.0         17           2
 I isoleucine          1.4          4           1
 K lysine              0.7          2           1
 L leucine            12.5         35           3
 M methionine          0.7          2           1
 N asparagine          1.8          5           1
 P proline             7.5         21           2
 Q glutamine           5.3         15           2
 R arginine            2.5          7           1
 S serine              3.9         11           2
 T threonine           3.9         11           1
 V valine             11.4         32           4
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346413 
LOC100292960          1.000   PREDICTED: hypothetical protein 
LOC100287174          1.000   PREDICTED: hypothetical protein XP_002342113 
LOC100293167          0.065   PREDICTED: hypothetical protein 
LOC100290803          0.065   PREDICTED: hypothetical protein XP_002347798 
LOC100287525          0.065   PREDICTED: hypothetical protein XP_002343590 
CNGB1                 0.013   cyclic nucleotide gated channel beta 1 isoform a [H...
GNAS                  0.013   GNAS complex locus alex 
LOC100127944          0.011   PREDICTED: hypothetical protein 
LOC100127944          0.011   PREDICTED: hypothetical protein 
LOC100127944          0.011   PREDICTED: hypothetical protein 
NINL                  0.011   ninein-like 
CACNA1F               0.009   calcium channel, voltage-dependent, L type, alpha 1F...
PIAS4                 0.009   protein inhibitor of activated STAT, 4 
FBXW7                 0.009   F-box and WD repeat domain containing 7 isoform 2 [H...
CT47A1                0.007   cancer/testis antigen family 47, member A1 
CT47A2                0.007   cancer/testis antigen family 47, member A2 
CT47A3                0.007   cancer/testis antigen family 47, member A3 
CT47A4                0.007   cancer/testis antigen family 47, member A4 
CT47A5                0.007   cancer/testis antigen family 47, member A5 
CT47A6                0.007   cancer/testis antigen family 47, member A6 
CT47A7                0.007   cancer/testis antigen family 47, member A7 
CT47A8                0.007   cancer/testis antigen family 47, member A8 
CT47A9                0.007   cancer/testis antigen family 47, member A9 
CT47A10               0.007   cancer/testis antigen family 47, member A10 
CT47A11               0.007   cancer/testis antigen family 47, member A11 
LOC100289263          0.007   PREDICTED: hypothetical protein XP_002344182 
UQCRC1                0.007   ubiquinol-cytochrome c reductase core protein I [Hom...
TUFT1                 0.007   tuftelin 1 isoform 2 
TUFT1                 0.007   tuftelin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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