Guide to the Human Genome
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Name: LOC100287525 Sequence: fasta or formatted (211aa) NCBI GI: 239745793
Description:

PREDICTED: hypothetical protein XP_002343590

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         29           2
 C cysteine            1.9          4           1
 D aspartate           4.7         10           2
 E glutamate           6.2         13           2
 F phenylalanine       0.5          1           1
 G glycine            13.7         29           2
 H histidine           6.2         13           1
 I isoleucine          0.5          1           1
 K lysine              1.4          3           1
 L leucine             7.6         16           4
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline             7.1         15           1
 Q glutamine           6.6         14           2
 R arginine           12.3         26           2
 S serine              6.2         13           2
 T threonine           1.4          3           1
 V valine              7.6         16           2
 W tryptophan          1.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343590 
LOC100293167          1.000   PREDICTED: hypothetical protein 
LOC100290803          1.000   PREDICTED: hypothetical protein XP_002347798 
LOC100292960          0.087   PREDICTED: hypothetical protein 
LOC100290301          0.087   PREDICTED: hypothetical protein XP_002346413 
LOC100287174          0.087   PREDICTED: hypothetical protein XP_002342113 
FLG                   0.024   filaggrin 
ELN                   0.019   elastin isoform e precursor 
ELN                   0.019   elastin isoform d precursor 
ELN                   0.019   elastin isoform c precursor 
ELN                   0.019   elastin isoform b precursor 
ELN                   0.019   elastin isoform a precursor 
LOC100293144          0.017   PREDICTED: hypothetical protein 
LOC100288857          0.017   PREDICTED: hypothetical protein 
LOC100288857          0.017   PREDICTED: hypothetical protein XP_002343308 
PANK1                 0.017   pantothenate kinase 1 isoform alpha 
KIF26B                0.017   kinesin family member 26B 
LOC100292292          0.017   PREDICTED: hypothetical protein 
LOC100292090          0.015   PREDICTED: hypothetical protein XP_002345529 
LOC100290023          0.015   PREDICTED: hypothetical protein XP_002348147 
HNRNPM                0.015   heterogeneous nuclear ribonucleoprotein M isoform a ...
HNRNPM                0.015   heterogeneous nuclear ribonucleoprotein M isoform b...
GOLIM4                0.015   golgi integral membrane protein 4 
KIF7                  0.015   kinesin family member 7 
TACC2                 0.015   transforming, acidic coiled-coil containing protein...
LOC100288573          0.015   PREDICTED: hypothetical protein XP_002343799 
LOC100128328          0.012   PREDICTED: hypothetical protein 
LOC100128328          0.012   PREDICTED: hypothetical protein 
FAM129A               0.012   niban protein isoform 2 
GOLM1                 0.012   golgi membrane protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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