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Search of human proteins with 239756699
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756699 PREDICTED: hypothetical protein [Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756699 PREDICTED: hypothetical protein [Homo sapiens] 629 0.0
gi|239745682 PREDICTED: hypothetical protein XP_002343543 [Homo ... 508 e-144
gi|122937271 WAS protein homolog associated with actin, golgi me... 36 0.048
gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domai... 35 0.062
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain... 35 0.062
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 35 0.081
gi|46276868 hypothetical protein LOC9710 [Homo sapiens] 35 0.081
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 34 0.14
gi|160707881 formin 2 [Homo sapiens] 34 0.14
gi|55956910 meningioma 1 [Homo sapiens] 34 0.18
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 33 0.24
gi|195963410 MEF2 activating motif and SAP domain containing tra... 33 0.31
gi|32698970 MEF2 activating motif and SAP domain containing tran... 33 0.31
gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor... 33 0.31
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 33 0.40
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 33 0.40
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 33 0.40
gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein... 33 0.40
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 32 0.53
gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens] 32 0.53
gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens] 32 0.53
gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens] 32 0.53
gi|21687062 hypothetical protein LOC124402 [Homo sapiens] 32 0.53
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 32 0.69
gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo ... 32 0.69
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 32 0.69
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 32 0.69
gi|116268109 nucleotide-binding oligomerization domains 27 [Homo... 32 0.69
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 32 0.90
gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens] 32 0.90
>gi|239756699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 629 bits (1622), Expect = 0.0
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MYRRQAPHGGHNNDLSHQVSPQKMRLQLMELELLSCRKEAEQLNFSRVPQDLSCRIRPCW 60
MYRRQAPHGGHNNDLSHQVSPQKMRLQLMELELLSCRKEAEQLNFSRVPQDLSCRIRPCW
Sbjct: 1 MYRRQAPHGGHNNDLSHQVSPQKMRLQLMELELLSCRKEAEQLNFSRVPQDLSCRIRPCW 60
Query: 61 LAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQP 120
LAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQP
Sbjct: 61 LAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQP 120
Query: 121 LCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQ 180
LCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQ
Sbjct: 121 LCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQ 180
Query: 181 DAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSH 240
DAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSH
Sbjct: 181 DAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSH 240
Query: 241 LAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSGGEEGW 300
LAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSGGEEGW
Sbjct: 241 LAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSGGEEGW 300
Query: 301 TS 302
TS
Sbjct: 301 TS 302
>gi|239745682 PREDICTED: hypothetical protein XP_002343543 [Homo
sapiens]
Length = 302
Score = 508 bits (1309), Expect = e-144
Identities = 245/247 (99%), Positives = 245/247 (99%), Gaps = 1/247 (0%)
Query: 56 IRPCWLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRA 115
IRPCWLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRA
Sbjct: 57 IRPCWLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRA 116
Query: 116 GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGA 175
GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSP LTGA
Sbjct: 117 GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGA 176
Query: 176 FRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFH 235
FRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFH
Sbjct: 177 FRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFH 236
Query: 236 LEFSHLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSG 295
LEFSHLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSG
Sbjct: 237 LEFSHLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSG 296
Query: 296 GEEGWTS 302
G EGWTS
Sbjct: 297 G-EGWTS 302
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 35.8 bits (81), Expect = 0.048
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 121 LCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIP--PASHTAQRPPD-TLSPTLTGAFR 177
+C S + RP D+ + PGS +L L H R P A RPP +++ + A R
Sbjct: 689 VCESPAERPRDSLESFSCPGSMDEVLASLRHGRAPLRKVEVPAVRPPHASINEHILAAIR 748
Query: 178 QAQDAVALHPAVTREPDLVPGS 199
Q +HP + P P S
Sbjct: 749 QGVKLKKVHPDLGPNPSSKPTS 770
>gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform b [Homo sapiens]
Length = 894
Score = 35.4 bits (80), Expect = 0.062
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 64 SQAHSGSRSSIIGTRPPHFTAEL----PQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQ 119
+QAH S I + A L PQG S ++ G R A +
Sbjct: 708 AQAHWASGRLDISNKTYETVASLGAATPQGESEDCPPPLPVKNSSRTLVQGCARHASGDR 767
Query: 120 PLCASCSHRPFDTPKDPGAPGSSTPILRPLL---HTRIPPASHTAQR-PPDTLSPTLT 173
+S S +TP+ G+P SS+ ++ PL ++ PP S R PP T P+LT
Sbjct: 768 SEVSSLSSEAPETPESLGSPASSSSLMSPLEPGDPSQAPPNSEEGLREPPGTSRPSLT 825
>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform a [Homo sapiens]
Length = 903
Score = 35.4 bits (80), Expect = 0.062
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 64 SQAHSGSRSSIIGTRPPHFTAEL----PQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQ 119
+QAH S I + A L PQG S ++ G R A +
Sbjct: 717 AQAHWASGRLDISNKTYETVASLGAATPQGESEDCPPPLPVKNSSRTLVQGCARHASGDR 776
Query: 120 PLCASCSHRPFDTPKDPGAPGSSTPILRPLL---HTRIPPASHTAQR-PPDTLSPTLT 173
+S S +TP+ G+P SS+ ++ PL ++ PP S R PP T P+LT
Sbjct: 777 SEVSSLSSEAPETPESLGSPASSSSLMSPLEPGDPSQAPPNSEEGLREPPGTSRPSLT 834
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 35.0 bits (79), Expect = 0.081
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 115 AGRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTG 174
+G L A C +P P +P P L P + P S + RPP LS
Sbjct: 1008 SGALPSPDAPCLPVKRGSPASPTSPSDCPPALAPRPLSGQAPGSPPSTRPPPWLSELPEN 1067
Query: 175 AFRQAQDAVALHPAVTREPDLVPGSG--ALHRDPVAEPGVVLKEVPFAQFH 223
Q + V L PA+TR+ G L + + G+ L E P++ H
Sbjct: 1068 TSLQ-EHGVKLGPALTRKVSCARGVDLETLTENKLHAEGIDLTEEPYSDKH 1117
>gi|46276868 hypothetical protein LOC9710 [Homo sapiens]
Length = 1070
Score = 35.0 bits (79), Expect = 0.081
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 18/102 (17%)
Query: 174 GAFRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRY 233
GA + Q ++ + P P P +GA H +PG+ P Q KQQ+PQ+ Y
Sbjct: 685 GAMQPQQPSLPVPP-----PPRAPQAGA-HTPLTPQPGLA----PQQQSPKQQQPQVQYY 734
Query: 234 FHLEFSHLAPCGPQS-LPERRLP---VLADQPQLHLVVGTGI 271
HL L P GPQ P+ R P V Q VG G+
Sbjct: 735 QHL----LQPIGPQQPPPQPRAPGKWVHGSSQQPAQAVGAGL 772
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 22/111 (19%)
Query: 76 GTRPPH------FTAELPQGSDVHTS--------SSFSSWACSSSMPGGNTRRAGRLQPL 121
G RPP A P GSD+ S SS S A ++ +P +R G
Sbjct: 338 GPRPPGAESHGCLPATRPPGSDLRESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTT 397
Query: 122 CASCSHRPFDT--------PKDPGAPGSSTPILRPLLHTRIPPASHTAQRP 164
+S S +T P PGA TP L H R+ P++H++++P
Sbjct: 398 TSSSSSSSSNTGLRGVEPNPGIPGADHYQTPALEVSHHGRLGPSAHSSRKP 448
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 34.3 bits (77), Expect = 0.14
Identities = 38/140 (27%), Positives = 51/140 (36%), Gaps = 26/140 (18%)
Query: 76 GTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRP---FDT 132
G++PPH + Q S H+ SS +C+ P P S S P
Sbjct: 826 GSQPPHSISTEFQTSHEHSVSSAFKNSCNIPSPPP--------LPCTESSSSMPGLGMVP 877
Query: 133 PKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVALHPAVTRE 192
P P PG + P L + PP T PP P L GA + P
Sbjct: 878 PPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPP--PPPLPGA--------GIPP----- 922
Query: 193 PDLVPGSGALHRDPVAEPGV 212
P +PG+G L P+ G+
Sbjct: 923 PPPLPGAGILPLPPLPGAGI 942
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 33.9 bits (76), Expect = 0.18
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 140 GSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVALHPAVTREPDLVPGS 199
GS P+++P PP Q+PP P G + P + P
Sbjct: 332 GSRHPLMQPPQQAPPPPQQQPPQQPPQQQPPPPPGLLVRQNSCPPALPRPQQGEAGTPSG 391
Query: 200 GALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPCGPQSLPERRLP---- 255
G P+ E P H+ + + Y FS P PQ P +RL
Sbjct: 392 GLQDGGPMLPSQHAQFEYP---IHRLENRSMHPYSEPVFSMQHP-PPQQAPNQRLQHFDA 447
Query: 256 ----VLADQPQLHLVVGTGIER----GPSGHADAVETHLAQRCFAPSGGE 297
+A +P+ G++R S H A++ HL+ + GE
Sbjct: 448 PPYMNVAKRPRFDFPGSAGVDRCASWNGSMHNGALDNHLSPSAYPGLPGE 497
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 33.5 bits (75), Expect = 0.24
Identities = 49/194 (25%), Positives = 65/194 (33%), Gaps = 26/194 (13%)
Query: 89 GSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHR---PFDTPKDPGAPGSSTPI 145
G D H+SSS SS + SSS +G P +H+ +++P GA S+
Sbjct: 52 GDDSHSSSSSSS-SSSSSSSSSCPGNSGDWDPSSFLSAHKLSGLWNSPHSSGAMPGSSLG 110
Query: 146 LRPLLHTRIPPASHTAQRPPDTLSP-TLTGAFRQAQDAVALHPAVTREPDLVPGSGALHR 204
P + P S Q T P + TG Q + HP+ P P L
Sbjct: 111 SPPTIPGEAFPVSEHHQHSDLTAPPNSPTGHHPQPASLIPSHPSSFGSP---PHPHLLPT 167
Query: 205 DPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPCGPQSLPERRLPVLADQPQLH 264
P A E P A P PC LP +P+L P
Sbjct: 168 TPAAPFPAQASECPVAAATAPHTP-------------GPCQSSHLPSTSMPLLKMPPPF- 213
Query: 265 LVVGTGIERGPSGH 278
+G SGH
Sbjct: 214 ----SGCSHPCSGH 223
>gi|195963410 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 1 [Homo sapiens]
Length = 415
Score = 33.1 bits (74), Expect = 0.31
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 21 PQKMRLQLMELELLSCRKEAEQLNFSRVPQDLSCRIRPCWLAASQAHSGSRSSII----G 76
P K+ LQ ++LE L+ + +QL +P SG++S ++ G
Sbjct: 162 PHKLELQTLKLEELTVSELRQQLRLRGLPV-----------------SGTKSMLLERMRG 204
Query: 77 TRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRPFDTPKDP 136
PP + P+ D S + + W RR G ++P ++ SHRP P+
Sbjct: 205 GAPPRERPK-PRRED---SPAGAPWPRLKPKALAAARRQGSVKP--SAASHRP-PLPRAA 257
Query: 137 GAPGSS---TPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQ 180
PG++ TP P + P+S TL L A R+AQ
Sbjct: 258 DTPGTAPAPTPTPAPAAAPALTPSSGPGSAAL-TLEEELQEAIRRAQ 303
>gi|32698970 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 2 [Homo sapiens]
Length = 312
Score = 33.1 bits (74), Expect = 0.31
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 21 PQKMRLQLMELELLSCRKEAEQLNFSRVPQDLSCRIRPCWLAASQAHSGSRSSII----G 76
P K+ LQ ++LE L+ + +QL +P SG++S ++ G
Sbjct: 59 PHKLELQTLKLEELTVSELRQQLRLRGLPV-----------------SGTKSMLLERMRG 101
Query: 77 TRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRPFDTPKDP 136
PP + P+ D S + + W RR G ++P ++ SHRP P+
Sbjct: 102 GAPPRERPK-PRRED---SPAGAPWPRLKPKALAAARRQGSVKP--SAASHRP-PLPRAA 154
Query: 137 GAPGSS---TPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQ 180
PG++ TP P + P+S TL L A R+AQ
Sbjct: 155 DTPGTAPAPTPTPAPAAAPALTPSSGPGSAAL-TLEEELQEAIRRAQ 200
>gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor
[Homo sapiens]
Length = 651
Score = 33.1 bits (74), Expect = 0.31
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 80 PHFTAEL-PQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRPFDTPKDPGA 138
PH EL PQ ++ S + PGG++ G LQP + + P PK
Sbjct: 471 PHLAQELRPQIQELLHSEHLGPSELEAPAPGGSSEDKGGLQPPDSKDADTPMTLPKGSTE 530
Query: 139 PGSSTP---ILRPL------LHTRIPPA--SHTAQRPPDTLSPTLTGAFRQA 179
+++P + PL ++ +P H+++ D L+P TG R+A
Sbjct: 531 QDAASPEKEKMNPLEQYERKVNASVPRGFPFHSSEIQRDELAPAGTGVSREA 582
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 32.7 bits (73), Expect = 0.40
Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 31/197 (15%)
Query: 80 PHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSH-RPFDTPKDP-- 136
P TA PQGS + + A ++ +P + ++A L P H P +P P
Sbjct: 214 PSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ 273
Query: 137 ---GAPG--SSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVALHPAVTR 191
G+ G S+ +P LH + PP H+ Q P P F L P ++
Sbjct: 274 PLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPF-------GLPPQASQ 326
Query: 192 EPDLVPGSGALHRDPVAEPGVVLKEVPFAQ--FHKQQRP--QILRYFHLEFSHLAPCGPQ 247
G L P A ++P +Q QQ P Q L L H+ P P
Sbjct: 327 ------GQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP--PP 378
Query: 248 SLPERRLPVLADQPQLH 264
+ P +LP PQ H
Sbjct: 379 TTPIPQLPA----PQAH 391
Score = 28.9 bits (63), Expect = 5.8
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 129 PFDTPKDPGAPGSSTPILRPLLHTRIPPASHTA-QRPPDTLSPTLTGAFRQAQDAVALHP 187
P + PG P TP P P S TA Q P +PT Q A ALHP
Sbjct: 195 PAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP 254
Query: 188 AVTREPDLVP 197
P P
Sbjct: 255 QRPPSPHPPP 264
Score = 28.1 bits (61), Expect = 10.0
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 185 LHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPC 244
LHPA S AL P A P PFA FH P LE LA
Sbjct: 783 LHPAANPMEHFARHS-ALTIPPTAGPH------PFASFHPGLNP-------LERERLALA 828
Query: 245 GPQSLPERRLPVLADQPQLH 264
GPQ PE P ++H
Sbjct: 829 GPQLRPEMSYPDRLAAERIH 848
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 32.7 bits (73), Expect = 0.40
Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 31/197 (15%)
Query: 80 PHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSH-RPFDTPKDP-- 136
P TA PQGS + + A ++ +P + ++A L P H P +P P
Sbjct: 768 PSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ 827
Query: 137 ---GAPG--SSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVALHPAVTR 191
G+ G S+ +P LH + PP H+ Q P P F L P ++
Sbjct: 828 PLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPF-------GLPPQASQ 880
Query: 192 EPDLVPGSGALHRDPVAEPGVVLKEVPFAQ--FHKQQRP--QILRYFHLEFSHLAPCGPQ 247
G L P A ++P +Q QQ P Q L L H+ P P
Sbjct: 881 ------GQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP--PP 932
Query: 248 SLPERRLPVLADQPQLH 264
+ P +LP PQ H
Sbjct: 933 TTPIPQLPA----PQAH 945
Score = 28.9 bits (63), Expect = 5.8
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 129 PFDTPKDPGAPGSSTPILRPLLHTRIPPASHTA-QRPPDTLSPTLTGAFRQAQDAVALHP 187
P + PG P TP P P S TA Q P +PT Q A ALHP
Sbjct: 749 PAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP 808
Query: 188 AVTREPDLVP 197
P P
Sbjct: 809 QRPPSPHPPP 818
Score = 28.1 bits (61), Expect = 10.0
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 185 LHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPC 244
LHPA S AL P A P PFA FH P LE LA
Sbjct: 1337 LHPAANPMEHFARHS-ALTIPPTAGPH------PFASFHPGLNP-------LERERLALA 1382
Query: 245 GPQSLPERRLPVLADQPQLH 264
GPQ PE P ++H
Sbjct: 1383 GPQLRPEMSYPDRLAAERIH 1402
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 32.7 bits (73), Expect = 0.40
Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 31/197 (15%)
Query: 80 PHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSH-RPFDTPKDP-- 136
P TA PQGS + + A ++ +P + ++A L P H P +P P
Sbjct: 768 PSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ 827
Query: 137 ---GAPG--SSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVALHPAVTR 191
G+ G S+ +P LH + PP H+ Q P P F L P ++
Sbjct: 828 PLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPF-------GLPPQASQ 880
Query: 192 EPDLVPGSGALHRDPVAEPGVVLKEVPFAQ--FHKQQRP--QILRYFHLEFSHLAPCGPQ 247
G L P A ++P +Q QQ P Q L L H+ P P
Sbjct: 881 ------GQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP--PP 932
Query: 248 SLPERRLPVLADQPQLH 264
+ P +LP PQ H
Sbjct: 933 TTPIPQLPA----PQAH 945
Score = 28.9 bits (63), Expect = 5.8
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 129 PFDTPKDPGAPGSSTPILRPLLHTRIPPASHTA-QRPPDTLSPTLTGAFRQAQDAVALHP 187
P + PG P TP P P S TA Q P +PT Q A ALHP
Sbjct: 749 PAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP 808
Query: 188 AVTREPDLVP 197
P P
Sbjct: 809 QRPPSPHPPP 818
Score = 28.1 bits (61), Expect = 10.0
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 185 LHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPC 244
LHPA S AL P A P PFA FH P LE LA
Sbjct: 1337 LHPAANPMEHFARHS-ALTIPPTAGPH------PFASFHPGLNP-------LERERLALA 1382
Query: 245 GPQSLPERRLPVLADQPQLH 264
GPQ PE P ++H
Sbjct: 1383 GPQLRPEMSYPDRLAAERIH 1402
>gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein)
[Homo sapiens]
Length = 480
Score = 32.7 bits (73), Expect = 0.40
Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 19/153 (12%)
Query: 49 PQDLSCRIRPCWLAASQAHSGSRSSIIGTRP---PHFTAELPQGSDVHTSSSFSSWACSS 105
P +C + + + S++G R P A LP G + +SSS SS SS
Sbjct: 187 PDPKACNWKKYKYIVLNSQASQAGSLVGERSSGQPCPQARLPSGDEASSSSSSSS--SSS 244
Query: 106 SMPGGNTRRAGRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPP 165
S G RL P A+ + GAP +STP L A T+ P
Sbjct: 245 SEEGPIPGPQSRLSPTAATVQFK-------CGAP-ASTPYL------LTSQAQDTSGSPS 290
Query: 166 DTLSPTLTGAFRQAQDAVALHPAVTREPDLVPG 198
+ P F Q+ A+ + LVPG
Sbjct: 291 ERARPLPGSEFFSCQNCEAVAGCSSGLDSLVPG 323
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 32.3 bits (72), Expect = 0.53
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 108 PGGNTRRAGRLQPLCAS--CSHRPFDTPKD-PGAPGSSTPILRPLLHTRIPPASHTAQ-- 162
PGG R +P+ AS S R P+ PGAPGSS P L P L P +A+
Sbjct: 114 PGG-----ARSRPVAASPAASSRARSRPESSPGAPGSSVPALLPSLPPLAAPRPLSARPR 168
Query: 163 -RPPDTLSPTLT 173
RPP LT
Sbjct: 169 LRPPQPQPLALT 180
>gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens]
Length = 141
Score = 32.3 bits (72), Expect = 0.53
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 92 VHTSSSFSSWACSSSMPGGNTRRA-GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLL 150
++ S SS AC + G + + G+L +C SC + P P GSS LRP L
Sbjct: 66 MYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGL 125
Query: 151 HTRI 154
T I
Sbjct: 126 RTTI 129
>gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens]
Length = 1507
Score = 32.3 bits (72), Expect = 0.53
Identities = 43/159 (27%), Positives = 53/159 (33%), Gaps = 60/159 (37%)
Query: 114 RAGRLQPLC-------ASCSHRPFDTPKDPG---------------APGSSTPILRPLLH 151
RA +QP C A C HR + + PG PGSS P RP
Sbjct: 36 RAAPVQPPCRLFFVTFAGCGHR-WRSESKPGWISRSRSGIALRAARPPGSSPP--RPAAP 92
Query: 152 TRIPPASHTAQRPPDTLSP---------------TLTGAFRQAQD--------------A 182
PP A+ P D + P T AFR+A+
Sbjct: 93 RPPPPGGVVAEAPGDVVIPRPRVQPMRVARGGPWTPNPAFREAESWSQIGNQRVSEQLLE 152
Query: 183 VALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQ 221
+L V+ L P S L R+P PG PFAQ
Sbjct: 153 TSLGNEVSDTEPLSPASAGLRRNPALPPG------PFAQ 185
>gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens]
Length = 89
Score = 32.3 bits (72), Expect = 0.53
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 92 VHTSSSFSSWACSSSMPGGNTRRA-GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLL 150
++ S SS AC + G + + G+L +C SC + P P GSS LRP L
Sbjct: 14 MYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGL 73
Query: 151 HTRI 154
T I
Sbjct: 74 RTTI 77
>gi|21687062 hypothetical protein LOC124402 [Homo sapiens]
Length = 177
Score = 32.3 bits (72), Expect = 0.53
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 62 AASQAHSGSRSSIIGTR----PPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGR 117
A+ HSG S + PPHF P + +SS+ SSW ++S PGG
Sbjct: 87 ASESFHSGGSGSPMAATATSPPPHF----PHAAT--SSSAASSWPTAASPPGGPQHH--- 137
Query: 118 LQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPA 157
QP P TP P +P S P L P T P A
Sbjct: 138 -QP------QPPLWTPTPP-SPASDWPPLAPQQATSEPRA 169
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 32.0 bits (71), Expect = 0.69
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 138 APGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVALH----PAVTREP 193
+P P P L +R P +R D +S T G R + L A +E
Sbjct: 1154 SPSGGAPQTTPTLRSR--PKDLPVRRKTDVISDTFPGKIRDGYRSSVLDIDALMAEYQEL 1211
Query: 194 DL-VPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILR 232
L VPG R P EP + +E P +QR + L+
Sbjct: 1212 SLKVPGEAQERRSPTVEPSTLPRERPVQLGGVEQRRRSLK 1251
>gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo
sapiens]
Length = 1595
Score = 32.0 bits (71), Expect = 0.69
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 138 APGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVALH----PAVTREP 193
+P P P L +R P +R D +S T G R + L A +E
Sbjct: 1154 SPSGGAPQTTPTLRSR--PKDLPVRRKTDVISDTFPGKIRDGYRSSVLDIDALMAEYQEL 1211
Query: 194 DL-VPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILR 232
L VPG R P EP + +E P +QR + L+
Sbjct: 1212 SLKVPGEAQERRSPTVEPSTLPRERPVQLGGVEQRRRSLK 1251
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 32.0 bits (71), Expect = 0.69
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 4/136 (2%)
Query: 55 RIRPCWLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRR 114
R+R C + +G PP + P+ S + + S+ P
Sbjct: 244 RLRGCHSVRPEGGGVRSCRTLGCCPPTSPHQPPRLPVTPVPQSVALPSLQSARPAA-AGA 302
Query: 115 AGRLQPLCASCSHRPFDTPKDPGAPG---SSTPILRPLLHTRIPPASHTAQRPPDTLSPT 171
A RL P A C+ + P PG P + TP+ P L + A +R P++
Sbjct: 303 APRLSPQAARCTALSTEKPDRPGPPRRPPAPTPVSAPTLRSAPLDAHRLRERLPESSVGP 362
Query: 172 LTGAFRQAQDAVALHP 187
R++++A + P
Sbjct: 363 RAEPARRSRNAAMVSP 378
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 32.0 bits (71), Expect = 0.69
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 77 TRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRL--QPLCASCSHR--PFDT 132
T P A +P GS TSS+ S+ A SS R+ + +P +S S P +
Sbjct: 30 TPSPLNGALVPSGSPA-TSSALSAQAAPSSSFAAALRKLAKQAEEPRGSSLSSESSPVSS 88
Query: 133 PKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPD--TLSPTLT 173
P + +STP P+ +PP H+ P T++PT T
Sbjct: 89 PATNHSSPASTPKRVPMGPIIVPPGGHSVPSTPPVVTIAPTKT 131
>gi|116268109 nucleotide-binding oligomerization domains 27 [Homo
sapiens]
Length = 1866
Score = 32.0 bits (71), Expect = 0.69
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 225 QQRPQILRYFHLEFSHLAPCGPQSLPE 251
Q+ PQ LR HL FSHL P G SL +
Sbjct: 1684 QELPQHLRVLHLPFSHLGPGGALSLAQ 1710
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 31.6 bits (70), Expect = 0.90
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 71 RSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRPF 130
+S + PP+ Q TS C + G + G LQ L A RP
Sbjct: 4233 QSQAVRQTPPY------QEPGTQTSPLQGLLGCQPQLGGFPGPQTGPLQELGAG--PRPQ 4284
Query: 131 DTPKDPGAPG--SSTPILRPLLHTRIPPASHTAQRPPDTLSPT 171
P+ P PG S+ P+L P+ T P + +RP SP+
Sbjct: 4285 GPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQLPSPS 4327
Score = 29.6 bits (65), Expect = 3.4
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 136 PGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVALHPAVTREPD 194
PG GS TP+ RP L +P + + P D+ F +++ EPD
Sbjct: 1912 PGLEGSRTPLQRPFLQGGLPLGNLPSSSPMDSYPGLCQSPFLDSRERGGFFSPEPGEPD 1970
Score = 29.3 bits (64), Expect = 4.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 147 RPLLHTRIPPASHTAQRPPDTLSPTL 172
RP LH RIPP PP +PT+
Sbjct: 2099 RPALHLRIPPQPGALGSPPPAAAPTI 2124
>gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens]
Length = 340
Score = 31.6 bits (70), Expect = 0.90
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 125 CSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGAFRQAQDAVA 184
CSH P + +D +PG + P P PP H+ + LSP L+ D
Sbjct: 91 CSHAPLSS-EDDTSPGCAAPSQAPFKAFLSPPEPHSHRGTDRKLSPLLSPLQDSLVDKTL 149
Query: 185 LHPAVTREPDLV 196
L P P V
Sbjct: 150 LEPREMVRPKKV 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,484,164
Number of Sequences: 37866
Number of extensions: 852916
Number of successful extensions: 2970
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 2830
Number of HSP's gapped (non-prelim): 199
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.