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Search of human proteins with 239756649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756649 PREDICTED: hypothetical protein [Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756649 PREDICTED: hypothetical protein [Homo sapiens] 633 0.0
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 40 0.003
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 40 0.004
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 40 0.004
gi|91208420 bassoon protein [Homo sapiens] 40 0.004
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 38 0.010
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 38 0.014
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 38 0.014
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 38 0.014
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 37 0.018
gi|50301232 synaptopodin 2-like isoform b [Homo sapiens] 37 0.018
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 37 0.018
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 37 0.023
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 37 0.023
gi|19924099 synapsin I isoform Ia [Homo sapiens] 37 0.023
gi|19924097 synapsin I isoform Ib [Homo sapiens] 37 0.023
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ... 37 0.030
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 37 0.030
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 37 0.030
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 37 0.030
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 37 0.030
gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo ... 36 0.040
gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo ... 36 0.040
gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo ... 36 0.040
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 36 0.040
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 36 0.052
>gi|239756649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 633 bits (1633), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MRRGSCAVLRSALGTTFRGSTAPSPHPSAEVARAGLRASPLRAGSQVREGRPCRRSQPAL 60
MRRGSCAVLRSALGTTFRGSTAPSPHPSAEVARAGLRASPLRAGSQVREGRPCRRSQPAL
Sbjct: 1 MRRGSCAVLRSALGTTFRGSTAPSPHPSAEVARAGLRASPLRAGSQVREGRPCRRSQPAL 60
Query: 61 SALRNLAWRAVSEAPRRRQAEPTGALGQLPPPALRTRNSLLLLLKNPPELVYVKPCKLPA 120
SALRNLAWRAVSEAPRRRQAEPTGALGQLPPPALRTRNSLLLLLKNPPELVYVKPCKLPA
Sbjct: 61 SALRNLAWRAVSEAPRRRQAEPTGALGQLPPPALRTRNSLLLLLKNPPELVYVKPCKLPA 120
Query: 121 RAFAISREIGTCALKTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDKAAATRAAL 180
RAFAISREIGTCALKTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDKAAATRAAL
Sbjct: 121 RAFAISREIGTCALKTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDKAAATRAAL 180
Query: 181 SFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPA 240
SFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPA
Sbjct: 181 SFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPA 240
Query: 241 MVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLARQVG 300
MVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLARQVG
Sbjct: 241 MVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLARQVG 300
Query: 301 GGGADSAGGRGAARVGAL 318
GGGADSAGGRGAARVGAL
Sbjct: 301 GGGADSAGGRGAARVGAL 318
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 40.8 bits (94), Expect = 0.002
Identities = 54/174 (31%), Positives = 67/174 (38%), Gaps = 38/174 (21%)
Query: 163 PRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPS 222
P++ RG + A A +SFS RR P R+Q +G + P + + P+
Sbjct: 53 PQKGRG--NLRGAPTAPVSFSRI---RRNPLRTQLSGSPPRRPTSVLR-------LASPA 100
Query: 223 RELSR-PAARTG-----VEPAVPAMVTTGRPPHLRFATG-LCASGKAPAQGAFP------ 269
+L R P R G PAV + GR LR G L SGK G P
Sbjct: 101 GDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQRVRSR 160
Query: 270 -----------AAPPGRGRRGPARTGAEPRAEGALTLARQVGGGGADSAGGRGA 312
AAP G G +G R G G T A GGGG GG GA
Sbjct: 161 LAGLGAPRGGAAAPRGWGGQGAERLGV--HQPGLPTHAALRGGGGGSEGGGGGA 212
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 40.8 bits (94), Expect = 0.002
Identities = 54/174 (31%), Positives = 67/174 (38%), Gaps = 38/174 (21%)
Query: 163 PRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPS 222
P++ RG + A A +SFS RR P R+Q +G + P + + P+
Sbjct: 53 PQKGRG--NLRGAPTAPVSFSRI---RRNPLRTQLSGSPPRRPTSVLR-------LASPA 100
Query: 223 RELSR-PAARTG-----VEPAVPAMVTTGRPPHLRFATG-LCASGKAPAQGAFP------ 269
+L R P R G PAV + GR LR G L SGK G P
Sbjct: 101 GDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQRVRSR 160
Query: 270 -----------AAPPGRGRRGPARTGAEPRAEGALTLARQVGGGGADSAGGRGA 312
AAP G G +G R G G T A GGGG GG GA
Sbjct: 161 LAGLGAPRGGAAAPRGWGGQGAERLGV--HQPGLPTHAALRGGGGGSEGGGGGA 212
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 40.0 bits (92), Expect = 0.003
Identities = 71/279 (25%), Positives = 98/279 (35%), Gaps = 41/279 (14%)
Query: 22 APSPHPSAEVARAGLRASPLRAGSQVREGRPCRRSQPAL------SALRNLAWRAVSEAP 75
AP+ PS R+ P + +P R + P S+ + A P
Sbjct: 1828 APAKVPSPGQQRSRSLHRPAKTSELATLSQPPRSATPPARLAKTPSSSSSQTSPASQPLP 1887
Query: 76 RRRQ--AEPTGAL---GQLPPPALRTRNSLLLLLKNPPELVYVKPCKLPARAFAISREIG 130
R+R + GAL G P P R L K V + + PAR +
Sbjct: 1888 RKRPPVTQAAGALPGPGASPVPKTPARTLLAKQHKTQRSPVRIPFMQRPARRGP--PPLA 1945
Query: 131 TCALKTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDKAAATRAALSF--SACALP 188
+ GPRG+ G +GP G LG + + + R L+F + L
Sbjct: 1946 RAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIKESPGLR 2005
Query: 189 RRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPAM-VTTGRP 247
RR S A GA+ P RG PA+PA+ + + R
Sbjct: 2006 RRRSELSSAESAASAPQGAS---PRRGR-------------------PALPAVFLCSSRC 2043
Query: 248 PHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPARTGAE 286
LR A G APA+ PAA P G R RT +E
Sbjct: 2044 EELRAAP---RQGPAPARQRPPAARPSPGERPARRTTSE 2079
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 39.7 bits (91), Expect = 0.004
Identities = 53/174 (30%), Positives = 66/174 (37%), Gaps = 38/174 (21%)
Query: 163 PRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPS 222
P++ RG + A A +SFS RR P R+Q +G + P + + P+
Sbjct: 53 PQKGRG--NLRGAPTAPVSFSRI---RRNPLRTQLSGSPPRRPTSVLR-------LASPA 100
Query: 223 RELSR-PAARTG-----VEPAVPAMVTTGRPPHLRFATGLC-ASGKAPAQGAFP------ 269
+L R P R G PAV + GR LR G SGK G P
Sbjct: 101 GDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQRVRSR 160
Query: 270 -----------AAPPGRGRRGPARTGAEPRAEGALTLARQVGGGGADSAGGRGA 312
AAP G G +G R G G T A GGGG GG GA
Sbjct: 161 LAGLGAPRGGAAAPRGWGGQGAERLGV--HQPGLPTHAALRGGGGGSEGGGGGA 212
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 39.7 bits (91), Expect = 0.004
Identities = 75/277 (27%), Positives = 99/277 (35%), Gaps = 55/277 (19%)
Query: 39 SPLRAGSQVREGRPCRRSQPALSALRNLAWRAVSEAPRRRQAEPTGALGQLPPPALRTRN 98
SPLR + G P R PA + + R+ R Q P G G PPP+ R+R
Sbjct: 2 SPLRPRGPHQGGTP--RPLPASAGAQGSQARSGLRLCRTTQGRPAG--GASPPPSPRSRP 57
Query: 99 SLLLLLKNPPELVYVKPCKLPARAFAISREIGTCALKTGPRGQIGGFSGPVRSGSPLGQR 158
PP +P AR P+G G S G
Sbjct: 58 EG----PGPP-----RPATPSARR---------------PQGLSAGVSA--------GPA 85
Query: 159 VLTRPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWV 218
+RP Q G RD+A A R L AR++ R P ++ R W
Sbjct: 86 QRSRPLQLAGPRDRAPA-------------RALHARTRMGRAARGPPAPSRGPLKRVTWT 132
Query: 219 GGPSRELS--RPAARTGVEPAVP--AMVTTGRPPHLRFATGLCASGKAPAQGAFPA-APP 273
R + A R G +P + +T P + A G+ A GA+P
Sbjct: 133 CAVRRLWTSWAWALRGGTDPVLDRRQQLTPRHRPAGETSGARRARGELQAWGAWPTWCGA 192
Query: 274 GRGRRGPART-GAEPRAEGALTLARQVGGGGADSAGG 309
GRGRRG + GA GA ++ G GA SA G
Sbjct: 193 GRGRRGRGESRGAFFMGGGAGAAGLRLRGIGARSANG 229
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 39.7 bits (91), Expect = 0.004
Identities = 75/277 (27%), Positives = 99/277 (35%), Gaps = 55/277 (19%)
Query: 39 SPLRAGSQVREGRPCRRSQPALSALRNLAWRAVSEAPRRRQAEPTGALGQLPPPALRTRN 98
SPLR + G P R PA + + R+ R Q P G G PPP+ R+R
Sbjct: 2 SPLRPRGPHQGGTP--RPLPASAGAQGSQARSGLRLCRTTQGRPAG--GASPPPSPRSRP 57
Query: 99 SLLLLLKNPPELVYVKPCKLPARAFAISREIGTCALKTGPRGQIGGFSGPVRSGSPLGQR 158
PP +P AR P+G G S G
Sbjct: 58 EG----PGPP-----RPATPSARR---------------PQGLSAGVSA--------GPA 85
Query: 159 VLTRPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWV 218
+RP Q G RD+A A R L AR++ R P ++ R W
Sbjct: 86 QRSRPLQLAGPRDRAPA-------------RALHARTRMGRAARGPPAPSRGPLKRVTWT 132
Query: 219 GGPSRELS--RPAARTGVEPAVP--AMVTTGRPPHLRFATGLCASGKAPAQGAFPA-APP 273
R + A R G +P + +T P + A G+ A GA+P
Sbjct: 133 CAVRRLWTSWAWALRGGTDPVLDRRQQLTPRHRPAGETSGARRARGELQAWGAWPTWCGA 192
Query: 274 GRGRRGPART-GAEPRAEGALTLARQVGGGGADSAGG 309
GRGRRG + GA GA ++ G GA SA G
Sbjct: 193 GRGRRGRGESRGAFFMGGGAGAAGLRLRGIGARSANG 229
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 39.7 bits (91), Expect = 0.004
Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 31/174 (17%)
Query: 147 GPVRSGSPLGQRVLTRPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPG 206
GP +S SP +++ + GA + T+ P++ A +QA + + P
Sbjct: 3755 GPQQSQSPSSRQIPS------GAASRQPQTQQQQQGLGLQPPQQ--ALTQARLQQQSQPT 3806
Query: 207 AAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQG 266
P + G P P+ TG +PA PP G + KAP QG
Sbjct: 3807 TRGSAPAASQPAGKPQ---PGPSTATGPQPA--------GPPRAEQTNGSKGTAKAPQQG 3855
Query: 267 AFPAA--PPGRGRRG----------PARTGAEPRAEGALTLARQVGGGGADSAG 308
P A PG G G P +P A+G ++ + GG A+ AG
Sbjct: 3856 RAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPGADGESVFSKILPGGAAEQAG 3909
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 38.9 bits (89), Expect = 0.006
Identities = 54/214 (25%), Positives = 75/214 (35%), Gaps = 20/214 (9%)
Query: 84 GALGQLPPPALRTRNSLLLLLKNPPELVYVKPCKLPARAFAISREIGTCALKTGPRGQIG 143
G G PPPA R R L+N P + P + + T AL+ G G
Sbjct: 4 GQHGVAPPPAGRER------LQNKAWSPAPAPARPPLNQPPGGKALSTRALQPG-----G 52
Query: 144 GFSGPVRSGSPLGQRVLTRPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRK 203
R G +R+ P + ++ + R A AGR+++
Sbjct: 53 ALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ 112
Query: 204 IPGAAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAP 263
+ A GR WV GP RPA G PA +G R CA G++
Sbjct: 113 VRPGAAGPRGRLPWVTGP-----RPA---GSLPAAQFAAASGAARAGRRRERACA-GRSA 163
Query: 264 AQGAFPAAPPGRGRRGPARTGAEPRAEGALTLAR 297
A P AP G RG +R A G + +
Sbjct: 164 GDAAGPEAPQPTGGRGCSRGSATASGVGGKAIKK 197
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 38.1 bits (87), Expect = 0.010
Identities = 36/103 (34%), Positives = 40/103 (38%), Gaps = 29/103 (28%)
Query: 212 PGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAA 271
PGRG W P R+ PAA + PP A G A G++ G PAA
Sbjct: 32 PGRGSWRRPPRRQRPGPAAPS--------------PP----ARGAAAWGRS---GGGPAA 70
Query: 272 PPGRGRRG-PARTGAEPRAEGALTLARQVGGGGADSAGGRGAA 313
G G P R GAEP G G GG G R AA
Sbjct: 71 QSGGDGGGLPRRAGAEPGGRGG-------GSGGTMPGGRRAAA 106
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 37.7 bits (86), Expect = 0.014
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 172 KAAATRAALSFSACALPRRLPARS-QAAGRVRKIPGAAQFFPGRGEWVGG--PSRELSRP 228
K +A R A S C R LP+ S GR + P + G G VGG SR
Sbjct: 23 KPSAGRCARSCCCCGR-RSLPSVSGPVRGRAERRPARGKHVRGGG--VGGCRDSRAGGSH 79
Query: 229 AARTGV-----EPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPART 283
AA +G+ + ++ G P LR + L G+AP G A+ G+ P+R
Sbjct: 80 AAPSGLGVPGDSESALGLLEPGPPKSLRISVTL---GQAPRAGPSAASSAAAGKTPPSRV 136
Query: 284 GAEPRA-EGALTLARQVGGGGADSAGGRGAA 313
AEP + GA G GRG A
Sbjct: 137 PAEPSSRRGASKRRESWRTDGERLRSGRGCA 167
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 37.7 bits (86), Expect = 0.014
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 172 KAAATRAALSFSACALPRRLPARS-QAAGRVRKIPGAAQFFPGRGEWVGG--PSRELSRP 228
K +A R A S C R LP+ S GR + P + G G VGG SR
Sbjct: 23 KPSAGRCARSCCCCGR-RSLPSVSGPVRGRAERRPARGKHVRGGG--VGGCRDSRAGGSH 79
Query: 229 AARTGV-----EPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPART 283
AA +G+ + ++ G P LR + L G+AP G A+ G+ P+R
Sbjct: 80 AAPSGLGVPGDSESALGLLEPGPPKSLRISVTL---GQAPRAGPSAASSAAAGKTPPSRV 136
Query: 284 GAEPRA-EGALTLARQVGGGGADSAGGRGAA 313
AEP + GA G GRG A
Sbjct: 137 PAEPSSRRGASKRRESWRTDGERLRSGRGCA 167
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 37.7 bits (86), Expect = 0.014
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 172 KAAATRAALSFSACALPRRLPARS-QAAGRVRKIPGAAQFFPGRGEWVGG--PSRELSRP 228
K +A R A S C R LP+ S GR + P + G G VGG SR
Sbjct: 23 KPSAGRCARSCCCCGR-RSLPSVSGPVRGRAERRPARGKHVRGGG--VGGCRDSRAGGSH 79
Query: 229 AARTGV-----EPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPART 283
AA +G+ + ++ G P LR + L G+AP G A+ G+ P+R
Sbjct: 80 AAPSGLGVPGDSESALGLLEPGPPKSLRISVTL---GQAPRAGPSAASSAAAGKTPPSRV 136
Query: 284 GAEPRA-EGALTLARQVGGGGADSAGGRGAA 313
AEP + GA G GRG A
Sbjct: 137 PAEPSSRRGASKRRESWRTDGERLRSGRGCA 167
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 37.4 bits (85), Expect = 0.018
Identities = 43/161 (26%), Positives = 58/161 (36%), Gaps = 28/161 (17%)
Query: 74 APRRRQAEPTGALGQLPPPALRTRNSLLLLLKNPPELVYVKPCKLPARAFAISREIGTCA 133
AP+R + G L PPP L ++ P LP+ +
Sbjct: 491 APKRAN-DSLGGLSPAPPPFLSSQG----------------PTPLPSFTSGVPSHAPVSG 533
Query: 134 LKTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDKAAATRAALSFSACALPRRLPA 193
+ PR SGPV + S L +RP GA + A AA S ++ P
Sbjct: 534 SPSTPRS-----SGPVTATSSLYIPAPSRPVTPGGAPEPPAPPSAAAMTSTASIFLSAPL 588
Query: 194 RSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAARTGV 234
R A P A PG E + +S PAARTG+
Sbjct: 589 RPSAR------PEAPAPGPGAPEPPSAREQRISVPAARTGI 623
Score = 31.2 bits (69), Expect = 1.3
Identities = 69/282 (24%), Positives = 95/282 (33%), Gaps = 34/282 (12%)
Query: 24 SPHPSAEVARAGLRASPLRAGSQVREGRPCRRSQPALSALRNLAWRAVSEAPRRRQAEPT 83
SP+ E+ARAG RAS + G+ S + RA S + EP
Sbjct: 354 SPYLDMELARAGSRASEGQGSG--LGGQLSEVSGRGVQLFEQQRQRADSSTQELARVEPA 411
Query: 84 GALG----QLPPPALRTRNSLLLLLKNPPELVYVKPCKLPA-----RAFAISREIGTCAL 134
L Q PP A PPE + P LPA R F T A
Sbjct: 412 AMLNGEGLQSPPRAQSA----------PPEAAVLPPSPLPAPVASPRPFQPGGGAPTPAP 461
Query: 135 KTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDK-AAATRAALSFSACALPRRLPA 193
R F+ ++ P V+ RP + A D + A F + P LP+
Sbjct: 462 SIFNR-SARPFTPGLQGQRPTTTSVIFRPLAPKRANDSLGGLSPAPPPFLSSQGPTPLPS 520
Query: 194 RSQAAGRVRKIPGAAQFFPGRGE-------WVGGPSRELSRPAARTGVEPAVPAMVTTGR 246
+ + G+ G ++ PSR ++ A P A +T+
Sbjct: 521 FTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPAPPSAAAMTSTA 580
Query: 247 PPHLRFATGLCASGKAPAQG-AFPAAPPGRGRR---GPARTG 284
L A +APA G P P R +R ARTG
Sbjct: 581 SIFLSAPLRPSARPEAPAPGPGAPEPPSAREQRISVPAARTG 622
>gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]
Length = 753
Score = 37.4 bits (85), Expect = 0.018
Identities = 43/161 (26%), Positives = 58/161 (36%), Gaps = 28/161 (17%)
Query: 74 APRRRQAEPTGALGQLPPPALRTRNSLLLLLKNPPELVYVKPCKLPARAFAISREIGTCA 133
AP+R + G L PPP L ++ P LP+ +
Sbjct: 267 APKRAN-DSLGGLSPAPPPFLSSQG----------------PTPLPSFTSGVPSHAPVSG 309
Query: 134 LKTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDKAAATRAALSFSACALPRRLPA 193
+ PR SGPV + S L +RP GA + A AA S ++ P
Sbjct: 310 SPSTPRS-----SGPVTATSSLYIPAPSRPVTPGGAPEPPAPPSAAAMTSTASIFLSAPL 364
Query: 194 RSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAARTGV 234
R A P A PG E + +S PAARTG+
Sbjct: 365 RPSAR------PEAPAPGPGAPEPPSAREQRISVPAARTGI 399
Score = 31.2 bits (69), Expect = 1.3
Identities = 69/282 (24%), Positives = 95/282 (33%), Gaps = 34/282 (12%)
Query: 24 SPHPSAEVARAGLRASPLRAGSQVREGRPCRRSQPALSALRNLAWRAVSEAPRRRQAEPT 83
SP+ E+ARAG RAS + G+ S + RA S + EP
Sbjct: 130 SPYLDMELARAGSRASEGQGSG--LGGQLSEVSGRGVQLFEQQRQRADSSTQELARVEPA 187
Query: 84 GALG----QLPPPALRTRNSLLLLLKNPPELVYVKPCKLPA-----RAFAISREIGTCAL 134
L Q PP A PPE + P LPA R F T A
Sbjct: 188 AMLNGEGLQSPPRAQSA----------PPEAAVLPPSPLPAPVASPRPFQPGGGAPTPAP 237
Query: 135 KTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDK-AAATRAALSFSACALPRRLPA 193
R F+ ++ P V+ RP + A D + A F + P LP+
Sbjct: 238 SIFNR-SARPFTPGLQGQRPTTTSVIFRPLAPKRANDSLGGLSPAPPPFLSSQGPTPLPS 296
Query: 194 RSQAAGRVRKIPGAAQFFPGRGE-------WVGGPSRELSRPAARTGVEPAVPAMVTTGR 246
+ + G+ G ++ PSR ++ A P A +T+
Sbjct: 297 FTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPAPPSAAAMTSTA 356
Query: 247 PPHLRFATGLCASGKAPAQG-AFPAAPPGRGRR---GPARTG 284
L A +APA G P P R +R ARTG
Sbjct: 357 SIFLSAPLRPSARPEAPAPGPGAPEPPSAREQRISVPAARTG 398
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 37.4 bits (85), Expect = 0.018
Identities = 45/167 (26%), Positives = 55/167 (32%), Gaps = 30/167 (17%)
Query: 163 PRQARGARDKAAATRAALSFS--------ACALPRRLPARSQAAGRVRKIPGAAQFFPGR 214
PR RGA AAA + + A A P R P + AA PG AQ
Sbjct: 112 PRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQ----- 166
Query: 215 GEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPG 274
GP + + P A PA P V P + A P APP
Sbjct: 167 ----PGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQ 222
Query: 275 RGR-----------RGPARTGAEPRAEGALTLARQVGGGGADSAGGR 310
+ + G R G R + R +GG G AGGR
Sbjct: 223 QQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSG--GAGGR 267
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 37.0 bits (84), Expect = 0.023
Identities = 37/114 (32%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 207 AAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRF----ATGLCASGKA 262
AA G G +GG E+ PAA A +G PH A G A
Sbjct: 139 AAAAGAGAGASLGGSGEEMG-PAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTA 197
Query: 263 PAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLARQVGGGGADSAGGRGAARVG 316
A GA +A G G A G A G GGGG GG GAA G
Sbjct: 198 GAPGAAGSAAASAGGAGGAGGGGPASAGG--------GGGGGGGGGGGGAAGAG 243
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 37.0 bits (84), Expect = 0.023
Identities = 37/114 (32%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 207 AAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRF----ATGLCASGKA 262
AA G G +GG E+ PAA A +G PH A G A
Sbjct: 139 AAAAGAGAGASLGGSGEEMG-PAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTA 197
Query: 263 PAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLARQVGGGGADSAGGRGAARVG 316
A GA +A G G A G A G GGGG GG GAA G
Sbjct: 198 GAPGAAGSAAASAGGAGGAGGGGPASAGG--------GGGGGGGGGGGGAAGAG 243
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 37.0 bits (84), Expect = 0.023
Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 220 GPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAP-PGRGRR 278
G +L RP P P + G P AT +SG APA A PAAP PG
Sbjct: 20 GYMTDLQRPQP----PPPPPGAHSPGATPGPGTATAERSSGVAPA--ASPAAPSPGSSGG 73
Query: 279 GP-----ARTGAEPRAEGALTLARQVGGGGADSAGGRGAARV 315
G + + A A T + QVGGG + G A+RV
Sbjct: 74 GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAASRV 115
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 37.0 bits (84), Expect = 0.023
Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 220 GPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAP-PGRGRR 278
G +L RP P P + G P AT +SG APA A PAAP PG
Sbjct: 20 GYMTDLQRPQP----PPPPPGAHSPGATPGPGTATAERSSGVAPA--ASPAAPSPGSSGG 73
Query: 279 GP-----ARTGAEPRAEGALTLARQVGGGGADSAGGRGAARV 315
G + + A A T + QVGGG + G A+RV
Sbjct: 74 GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAASRV 115
>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
sapiens]
Length = 351
Score = 36.6 bits (83), Expect = 0.030
Identities = 46/176 (26%), Positives = 59/176 (33%), Gaps = 12/176 (6%)
Query: 148 PVRSGSPLGQRVLTRPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGA 207
P + S G RV Q RG DK R + + + P +AAG K
Sbjct: 119 PYQDASRAGSRVCRSRPQNRGGGDKKPRRRGQKAAKSRGGGGKKPRGQKAAGAGAKKHRK 178
Query: 208 AQFFPGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASG----KAP 263
+ R GG + + A G A +P R + G K
Sbjct: 179 PRRRGERAAAAGGKKLQKAAAAKSRGGGGKKTAAAGGKKPRRRRGQKAAKSRGGGDKKLE 238
Query: 264 AQGAFPAAPPGRGRRGPARTGAEPRAEGALTLARQVGG--------GGADSAGGRG 311
Q A RG + P R G + R G T +R GG GA S GGRG
Sbjct: 239 RQKAALTGVKSRGDKKPLRGGKKQRERGQNTKSRGGGGEKPQKAAAAGAKSRGGRG 294
Score = 30.8 bits (68), Expect = 1.7
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 150 RSGSPLGQRVLTRPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPG--A 207
++GSP R+ PR+ R + ++A R ++ A R +R Q G K P
Sbjct: 91 KAGSPGRGRLGKEPRR-RESWTRSAPRRCPYQDASRAGSRVCRSRPQNRGGGDKKPRRRG 149
Query: 208 AQFFPGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQGA 267
+ RG GG + + AA G + R P R A GK + A
Sbjct: 150 QKAAKSRG---GGGKKPRGQKAAGAGAKKH--------RKPRRRGERAAAAGGKKLQKAA 198
Query: 268 FPAAPPGRGRRGPARTGAEPRAEGALTLARQVGGG 302
+ G G++ A G +PR A+ GGG
Sbjct: 199 AAKSRGGGGKKTAAAGGKKPRRRRGQKAAKSRGGG 233
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 36.6 bits (83), Expect = 0.030
Identities = 59/201 (29%), Positives = 76/201 (37%), Gaps = 36/201 (17%)
Query: 130 GTCALKTG---PRGQIGGFSGPV---RSGSPLGQRVLTRPRQ--------ARGARDKAAA 175
G+ L+ G PRG G +GP R G+ G R TR R RGAR +
Sbjct: 68 GSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCH 127
Query: 176 TRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAARTGVE 235
+ + S+CA R R + A R P R RPA +
Sbjct: 128 SPSCCRSSSCAWHRWPQLRGREA-EPRASPALLICIAPR-----------PRPALPAALH 175
Query: 236 PAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPA--RTGAEPRAEGAL 293
+ A T G R LC++G A A+PP R P R+G PR G
Sbjct: 176 --IGARATAGLAAK-RAQPQLCSAGTAARGRRTRASPPTPPRPRPPGLRSGDVPR--GGA 230
Query: 294 TLARQVGGGGADSAGGRGAAR 314
+ R G GA GGRG A+
Sbjct: 231 RVERPTGRRGA---GGRGGAQ 248
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 36.6 bits (83), Expect = 0.030
Identities = 59/201 (29%), Positives = 76/201 (37%), Gaps = 36/201 (17%)
Query: 130 GTCALKTG---PRGQIGGFSGPV---RSGSPLGQRVLTRPRQ--------ARGARDKAAA 175
G+ L+ G PRG G +GP R G+ G R TR R RGAR +
Sbjct: 68 GSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCH 127
Query: 176 TRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAARTGVE 235
+ + S+CA R R + A R P R RPA +
Sbjct: 128 SPSCCRSSSCAWHRWPQLRGREA-EPRASPALLICIAPR-----------PRPALPAALH 175
Query: 236 PAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPA--RTGAEPRAEGAL 293
+ A T G R LC++G A A+PP R P R+G PR G
Sbjct: 176 --IGARATAGLAAK-RAQPQLCSAGTAARGRRTRASPPTPPRPRPPGLRSGDVPR--GGA 230
Query: 294 TLARQVGGGGADSAGGRGAAR 314
+ R G GA GGRG A+
Sbjct: 231 RVERPTGRRGA---GGRGGAQ 248
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.030
Identities = 55/201 (27%), Positives = 71/201 (35%), Gaps = 42/201 (20%)
Query: 94 LRTRNSLLLLLKNPPELVYVKPCKLPARAFAISREIGTCALKTGPRG-----QIGGFSGP 148
LR N + + ++ PP ++P A IG A + P G G +GP
Sbjct: 72 LRGENLVSMTVEGPPPKD-TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP 130
Query: 149 VRSGSPLGQRVLTRPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGAA 208
VR Q+V+T Q RG AA AA + S P + P
Sbjct: 131 VRGVGGPSQQVMT--PQGRGT---VAAAAAAATASIAGAPTQYP---------------- 169
Query: 209 QFFPGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAF 268
PGR GGP + R A G+ P M PP G+ G+ G
Sbjct: 170 ---PGR----GGPPPPMGRGAPPPGMMGPPPGMRPPMGPP-----MGI-PPGRGTPMGMP 216
Query: 269 PAA--PPGRGRRGPARTGAEP 287
P PP G RGP G P
Sbjct: 217 PPGMRPPPPGMRGPPPPGMRP 237
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 36.6 bits (83), Expect = 0.030
Identities = 58/195 (29%), Positives = 71/195 (36%), Gaps = 30/195 (15%)
Query: 134 LKTGPRGQIGGFSGPVRSGSPLGQRVLTRPRQARGARDKAAATRAALSFSACALPRRLPA 193
L GP G GG +GP L P A A AAA R + + + +
Sbjct: 8 LPRGPGGGAGG-TGP-----------LMHPDAAAAAAAAAAAERLHAGAAYREVQKLMHH 55
Query: 194 RSQAAGRVRKIPGA-AQFFP----GRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPP 248
AG + A Q+ P G G+W GGP E + A G A G
Sbjct: 56 EWLGAGAGHPVGLAHPQWLPTGGGGGGDWAGGPHLEHGK-AGGGGTGRADDG--GGGGGF 112
Query: 249 HLRFA-TGLCASGKAPAQGAF-----PAAPPGRGRRGPARTGAEPRAEGALTLARQVGGG 302
H R G +G A AQG+ PA P G G G +P+ G A GGG
Sbjct: 113 HARLVHQGAAHAGAAWAQGSTAHHLGPAMSPSPGASG----GHQPQPLGLYAQAAYPGGG 168
Query: 303 GADSAGGRGAARVGA 317
G AG A GA
Sbjct: 169 GGGLAGMLAAGGGGA 183
>gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo
sapiens]
Length = 323
Score = 36.2 bits (82), Expect = 0.040
Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 27/156 (17%)
Query: 163 PRQARGARDKAAATRAALSFSACALP-------------RRLPARSQAAGRVRKIPGAAQ 209
P RGAR A+ A + +A +P R P+RS AGR + P Q
Sbjct: 99 PGSRRGARSLPASPLGAQARAAACVPGKGGAASRGDTPCSRQPSRSPLAGRSVRAP---Q 155
Query: 210 FFPGRGE-WVGGPSRELSRP----AARTGVEPAVPAMVTTGR----PPHLRFATGLCASG 260
G G W GGP RP A R A P ++ G+ PP + + S
Sbjct: 156 RRVGAGAGWRGGPGLGPVRPPGWRAGRRTRRTAGPGRLSFGKTLAVPPLVSVDPAVAFSR 215
Query: 261 KAPAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLA 296
A P AP ++GP + EPRA + A
Sbjct: 216 AADL--CPPVAPAVLEQKGPPSSRTEPRAPSPMEQA 249
>gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo
sapiens]
Length = 323
Score = 36.2 bits (82), Expect = 0.040
Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 27/156 (17%)
Query: 163 PRQARGARDKAAATRAALSFSACALP-------------RRLPARSQAAGRVRKIPGAAQ 209
P RGAR A+ A + +A +P R P+RS AGR + P Q
Sbjct: 99 PGSRRGARSLPASPLGAQARAAACVPGKGGAASRGDTPCSRQPSRSPLAGRSVRAP---Q 155
Query: 210 FFPGRGE-WVGGPSRELSRP----AARTGVEPAVPAMVTTGR----PPHLRFATGLCASG 260
G G W GGP RP A R A P ++ G+ PP + + S
Sbjct: 156 RRVGAGAGWRGGPGLGPVRPPGWRAGRRTRRTAGPGRLSFGKTLAVPPLVSVDPAVAFSR 215
Query: 261 KAPAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLA 296
A P AP ++GP + EPRA + A
Sbjct: 216 AADL--CPPVAPAVLEQKGPPSSRTEPRAPSPMEQA 249
>gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo
sapiens]
Length = 323
Score = 36.2 bits (82), Expect = 0.040
Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 27/156 (17%)
Query: 163 PRQARGARDKAAATRAALSFSACALP-------------RRLPARSQAAGRVRKIPGAAQ 209
P RGAR A+ A + +A +P R P+RS AGR + P Q
Sbjct: 99 PGSRRGARSLPASPLGAQARAAACVPGKGGAASRGDTPCSRQPSRSPLAGRSVRAP---Q 155
Query: 210 FFPGRGE-WVGGPSRELSRP----AARTGVEPAVPAMVTTGR----PPHLRFATGLCASG 260
G G W GGP RP A R A P ++ G+ PP + + S
Sbjct: 156 RRVGAGAGWRGGPGLGPVRPPGWRAGRRTRRTAGPGRLSFGKTLAVPPLVSVDPAVAFSR 215
Query: 261 KAPAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLA 296
A P AP ++GP + EPRA + A
Sbjct: 216 AADL--CPPVAPAVLEQKGPPSSRTEPRAPSPMEQA 249
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.2 bits (82), Expect = 0.040
Identities = 72/305 (23%), Positives = 102/305 (33%), Gaps = 38/305 (12%)
Query: 38 ASPLRAGSQVREGRPCRRSQPALSALRNLAWRAVSEAPRRRQAEPTGALGQLPPPALRTR 97
+SPLR + + + RR + + R R+ S +R++ P R+
Sbjct: 196 SSPLR--KKKKSVKKHRRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSH 253
Query: 98 NSLLLLLKNPPELVYVKPCKLPARAFAISREIGTCALKTGPRGQIG----------GFSG 147
+P + + P+R R+ G KTG + G G+
Sbjct: 254 RHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGR---KTGSQRSSGSRSPSPSGGSGWGS 310
Query: 148 PVRSGSPLGQRVLT---RPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKI 204
P R+G GQR RP A DK ++ + A A PAR + + R
Sbjct: 311 PQRNGGS-GQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSA 369
Query: 205 PGAAQFFPGRG-EWVGGPSRELSRPAARTGVEPAVPAMVTTGR------PPH-----LRF 252
P + GRG GG R R R + A GR PP L
Sbjct: 370 PSSQ----GRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSR 425
Query: 253 ATGLCASGK---APAQGAFPAAPPGRGRRGPARTGAEPRAEGALTLARQVGGGGADSAGG 309
A SG AP G P + G G G PRA A T G G
Sbjct: 426 ARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEG 485
Query: 310 RGAAR 314
+ ++R
Sbjct: 486 KSSSR 490
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 35.8 bits (81), Expect = 0.052
Identities = 46/203 (22%), Positives = 64/203 (31%), Gaps = 12/203 (5%)
Query: 105 KNPPEL---VYVKPCKLPARAFAISREIGTCALKTGPRGQIGGFSGPVRSGSPLGQRVLT 161
K PP + +Y P ++ A+A+ + E + GG P R L
Sbjct: 3 KLPPSMRKRLYSLPQQVGAKAWIMDEE------EDAEEEGAGGRQDPSRRSIRLRPLPSP 56
Query: 162 RPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGP 221
P A G + ++ A P R +S G R+ G+ RG GG
Sbjct: 57 SPSAAAGGTESRSSALGAADSEG---PARGAGKSSTNGDCRRFRGSLASLGSRGGGSGGT 113
Query: 222 SRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRGPA 281
S E P R GL A + P A PAA P ++ P
Sbjct: 114 GSGSSHGHLHDSAEERRLIAEGDASPGEDRTPPGLAAEPERPGASAQPAASPPPPQQPPQ 173
Query: 282 RTGAEPRAEGALTLARQVGGGGA 304
A T + GG A
Sbjct: 174 PASASCEQPSVDTAIKVEGGAAA 196
Score = 28.5 bits (62), Expect = 8.2
Identities = 30/110 (27%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 205 PGAAQFFPGRGEWVGGPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPA 264
PG + FP G L P A + P VP G PP G
Sbjct: 1032 PGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQR--RGTPP---LTPGRLTQDLKLI 1086
Query: 265 QGAFPAAPPGRG---RRGPARTGAEPRAEGALTLARQVGGGGADSAGGRG 311
+ PA P RR + E A L G GG+ S+GG G
Sbjct: 1087 SASQPALPQDGAQTLRRASPHSSGESMAAFPLFPRAGGGSGGSGSSGGLG 1136
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,743,385
Number of Sequences: 37866
Number of extensions: 858959
Number of successful extensions: 5829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 412
Number of HSP's that attempted gapping in prelim test: 5166
Number of HSP's gapped (non-prelim): 1026
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.