Guide to the Human Genome
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Name: LOC100293030 Sequence: fasta or formatted (194aa) NCBI GI: 239756647
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         18           3
 C cysteine            0.5          1           1
 D aspartate           3.1          6           1
 E glutamate           3.6          7           1
 F phenylalanine       2.1          4           1
 G glycine            17.5         34           2
 H histidine           5.7         11           1
 I isoleucine          2.6          5           1
 K lysine              0.5          1           1
 L leucine            13.4         26           2
 M methionine          1.0          2           1
 N asparagine          0.0          0           0
 P proline             7.7         15           2
 Q glutamine           7.7         15           2
 R arginine           11.9         23           3
 S serine              1.0          2           1
 T threonine           1.5          3           1
 V valine             10.3         20           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291045          1.000   PREDICTED: hypothetical protein XP_002347720 
LOC100288358          1.000   PREDICTED: hypothetical protein XP_002344144 
TSC22D1               0.022   TSC22 domain family, member 1 isoform 1 
LOC728767             0.022   PREDICTED: hypothetical protein 
LOC728767             0.022   PREDICTED: hypothetical protein 
AGTRAP                0.016   angiotensin II receptor-associated protein isoform e...
AGTRAP                0.016   angiotensin II receptor-associated protein isoform c...
AGTRAP                0.016   angiotensin II receptor-associated protein isoform d...
COL7A1                0.016   alpha 1 type VII collagen precursor 
COL11A2               0.016   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.016   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.016   collagen, type XI, alpha 2 isoform 1 preproprotein ...
HPS4                  0.014   light ear protein isoform a 
HPS4                  0.014   light ear protein isoform b 
LOC100292184          0.014   PREDICTED: hypothetical protein 
GLCCI1                0.014   glucocorticoid induced transcript 1 
LOC339742             0.011   PREDICTED: hypothetical protein 
LOC729575             0.011   PREDICTED: hypothetical protein 
LOC100288110          0.011   PREDICTED: hypothetical protein 
LOC100288110          0.011   PREDICTED: hypothetical protein XP_002343007 
CCDC57                0.011   coiled-coil domain containing 57 
UNC93B1               0.011   unc-93 homolog B1 
LOC100292168          0.008   PREDICTED: similar to hCG2030094 
C1QL4                 0.008   complement component 1, q subcomponent-like 4 
THSD4                 0.008   thrombospondin, type I, domain containing 4 
LOC100291596          0.008   PREDICTED: hypothetical protein XP_002344746 
LOC100292691          0.008   PREDICTED: hypothetical protein 
LOC729570             0.008   PREDICTED: hypothetical protein 
LOC100288068          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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