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Search of human proteins with 239756611
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756611 PREDICTED: hypothetical protein [Homo sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756611 PREDICTED: hypothetical protein [Homo sapiens] 354 2e-98
gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo ... 354 2e-98
gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo ... 354 2e-98
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 40 0.001
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 39 0.002
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 39 0.003
gi|239752939 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 39 0.003
gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo ... 39 0.003
gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo ... 39 0.003
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 39 0.003
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 39 0.003
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 38 0.003
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 38 0.003
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 38 0.003
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 38 0.003
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 36 0.013
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 36 0.013
gi|50083281 KIAA1853 protein [Homo sapiens] 35 0.029
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 34 0.066
gi|38569475 metaxin 1 isoform 1 [Homo sapiens] 33 0.086
gi|38569477 metaxin 1 isoform 2 [Homo sapiens] 33 0.086
gi|239755599 PREDICTED: hypothetical protein XP_002344618 [Homo ... 33 0.086
gi|239750090 PREDICTED: hypothetical protein XP_002347290 [Homo ... 33 0.086
gi|239744399 PREDICTED: hypothetical protein XP_002343154 [Homo ... 33 0.086
gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo ... 33 0.11
gi|13376611 zinc finger protein 703 [Homo sapiens] 33 0.11
gi|158508495 sex comb on midleg-like 4 [Homo sapiens] 33 0.11
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|5031759 homeobox A11 [Homo sapiens] 32 0.19
>gi|239756611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 354 bits (909), Expect = 2e-98
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF
Sbjct: 1 MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
Query: 61 TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS
Sbjct: 61 TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
Query: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ
Sbjct: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
>gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo
sapiens]
Length = 166
Score = 354 bits (909), Expect = 2e-98
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF
Sbjct: 1 MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
Query: 61 TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS
Sbjct: 61 TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
Query: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ
Sbjct: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
>gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo
sapiens]
Length = 166
Score = 354 bits (909), Expect = 2e-98
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF
Sbjct: 1 MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
Query: 61 TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS
Sbjct: 61 TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
Query: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ
Sbjct: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 39.7 bits (91), Expect = 0.001
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 77 RGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAA 136
R SRH + SSS+S G S G RP+Q+R R + T++ V+ + GP S + A+
Sbjct: 729 RPRRSRHGPASSSSSS--EGEDSAGPARPSQKRPRCSATAQRVAAWTPGPASNREAATAS 786
Query: 137 TPRS 140
T R+
Sbjct: 787 TSRA 790
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 39.3 bits (90), Expect = 0.002
Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 5 AHPLACHTTCSPLGS----SPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
A P +T SP GS SP TA G+ +R T + PS ++ ST +
Sbjct: 455 ASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRT-PSRASLTKMESTASITR 513
Query: 61 TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
T +R +A G S A GS S + TPS +L T R +T SR
Sbjct: 514 TPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPSRASL 573
Query: 121 RCSSGPPSCARSTGAATPRSTGSPT 145
+ R +A+P TG P+
Sbjct: 574 TRTPSTVLLTRMPPSASP--TGMPS 596
Score = 37.0 bits (84), Expect = 0.008
Identities = 46/159 (28%), Positives = 62/159 (38%), Gaps = 15/159 (9%)
Query: 12 TTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTR----RLSSTRRLGFTNTRRGK 67
+T SP G+ P + RKP S P+G ++R ++ ST T R
Sbjct: 381 STASPTGTPPRASPTGTPSTASLTRKPPRAS-PTGMLSRTSITKMDSTASPTRTPPRASP 439
Query: 68 GSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGA-------LRPTQRRRRITWTSRCVS 120
A G SR S +G+ S ++ G+PS + PT R + T R S
Sbjct: 440 TGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLT-RTPS 498
Query: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPST 159
R S S TP S SPTW +G PST
Sbjct: 499 RASLTKMESTASI-TRTP-SRASPTWTPSTASPTGSPST 535
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ RK + S S R SST G T+T GS SA R G S S S SSS+S
Sbjct: 61 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS--STSRSSSSS 118
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
+ G+PS R RRR SR S PP
Sbjct: 119 SSSGSPSPSRRRHDNRRR---------SRSKSKPP 144
Score = 27.7 bits (60), Expect = 4.7
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 30 KRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSS 89
K T+A P S + ++ S + ++ + +G R + R ++SGSS
Sbjct: 20 KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG------RDKTRKRRSASSGSS 73
Query: 90 SASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTC 149
S R R + TS S S+G S + S+ A++ + S + +
Sbjct: 74 ST-----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116
Query: 150 ENGGSGGPSTRRLR 163
+ SG PS R R
Sbjct: 117 SSSSSGSPSPSRRR 130
>gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 38.5 bits (88), Expect = 0.003
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 42 SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
+ P+G++ RR S+ R G GS+W A SAS SSSA C
Sbjct: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225
Query: 95 -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
R S P++R+RR + S RCS+ +C A P SP+ +
Sbjct: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285
Query: 153 GS--GGPSTRR 161
S GPS R
Sbjct: 286 FSRRSGPSGNR 296
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ RK + S S R SST G T+T GS SA R G S S S SSS+S
Sbjct: 61 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS--STSRSSSSS 118
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
+ G+PS R RRR SR S PP
Sbjct: 119 SSSGSPSPSRRRHDNRRR---------SRSKSKPP 144
Score = 27.7 bits (60), Expect = 4.7
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 30 KRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSS 89
K T+A P S + ++ S + ++ + +G R + R ++SGSS
Sbjct: 20 KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG------RDKTRKRRSASSGSS 73
Query: 90 SASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTC 149
S R R + TS S S+G S + S+ A++ + S + +
Sbjct: 74 ST-----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116
Query: 150 ENGGSGGPSTRRLR 163
+ SG PS R R
Sbjct: 117 SSSSSGSPSPSRRR 130
>gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo
sapiens]
Length = 310
Score = 38.5 bits (88), Expect = 0.003
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 42 SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
+ P+G++ RR S+ R G GS+W A SAS SSSA C
Sbjct: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225
Query: 95 -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
R S P++R+RR + S RCS+ +C A P SP+ +
Sbjct: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285
Query: 153 GS--GGPSTRR 161
S GPS R
Sbjct: 286 FSRRSGPSGNR 296
>gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
sapiens]
Length = 310
Score = 38.5 bits (88), Expect = 0.003
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 42 SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
+ P+G++ RR S+ R G GS+W A SAS SSSA C
Sbjct: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225
Query: 95 -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
R S P++R+RR + S RCS+ +C A P SP+ +
Sbjct: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285
Query: 153 GS--GGPSTRR 161
S GPS R
Sbjct: 286 FSRRSGPSGNR 296
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ RK + S S R SST G T+T GS SA R G S S S SSS+S
Sbjct: 61 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS--STSRSSSSS 118
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
+ G+PS R RRR SR S PP
Sbjct: 119 SSSGSPSPSRRRHDNRRR---------SRSKSKPP 144
Score = 27.7 bits (60), Expect = 4.7
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 30 KRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSS 89
K T+A P S + ++ S + ++ + +G R + R ++SGSS
Sbjct: 20 KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG------RDKTRKRRSASSGSS 73
Query: 90 SASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTC 149
S R R + TS S S+G S + S+ A++ + S + +
Sbjct: 74 ST-----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116
Query: 150 ENGGSGGPSTRRLR 163
+ SG PS R R
Sbjct: 117 SSSSSGSPSPSRRR 130
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ RK + S S R SST G T+T GS SA R G S S S SSS+S
Sbjct: 61 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS--STSRSSSSS 118
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
+ G+PS R RRR SR S PP
Sbjct: 119 SSSGSPSPSRRRHDNRRR---------SRSKSKPP 144
Score = 27.7 bits (60), Expect = 4.7
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 30 KRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSS 89
K T+A P S + ++ S + ++ + +G R + R ++SGSS
Sbjct: 20 KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG------RDKTRKRRSASSGSS 73
Query: 90 SASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTC 149
S R R + TS S S+G S + S+ A++ + S + +
Sbjct: 74 ST-----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116
Query: 150 ENGGSGGPSTRRLR 163
+ SG PS R R
Sbjct: 117 SSSSSGSPSPSRRR 130
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.1 bits (87), Expect = 0.003
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ RK + S S R SST G T+T GS SA R G S S S SSS+S
Sbjct: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
+ G+PS R RRR SR S PP
Sbjct: 121 S--GSPSPSRRRHDNRRR---------SRSKSKPP 144
Score = 30.0 bits (66), Expect = 0.95
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
Query: 82 RHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRST 141
RHSAS SS++ R R + TS S S+G S + S+ A++ +
Sbjct: 65 RHSASSGSSST----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 142 GSPTWHTCENGGSGGPSTRRLR 163
S + + + SG PS R R
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRR 130
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.1 bits (87), Expect = 0.003
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ RK + S S R SST G T+T GS SA R G S S S SSS+S
Sbjct: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
+ G+PS R RRR SR S PP
Sbjct: 121 S--GSPSPSRRRHDNRRR---------SRSKSKPP 144
Score = 30.0 bits (66), Expect = 0.95
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
Query: 82 RHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRST 141
RHSAS SS++ R R + TS S S+G S + S+ A++ +
Sbjct: 65 RHSASSGSSST----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 142 GSPTWHTCENGGSGGPSTRRLR 163
S + + + SG PS R R
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRR 130
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.1 bits (87), Expect = 0.003
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ RK + S S R SST G T+T GS SA R G S S S SSS+S
Sbjct: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
+ G+PS R RRR SR S PP
Sbjct: 121 S--GSPSPSRRRHDNRRR---------SRSKSKPP 144
Score = 30.0 bits (66), Expect = 0.95
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
Query: 82 RHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRST 141
RHSAS SS++ R R + TS S S+G S + S+ A++ +
Sbjct: 65 RHSASSGSSST----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 142 GSPTWHTCENGGSGGPSTRRLR 163
S + + + SG PS R R
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRR 130
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 38.1 bits (87), Expect = 0.003
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ RK + S S R SST G T+T GS SA R G S S S SSS+S
Sbjct: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
+ G+PS R RRR SR S PP
Sbjct: 121 S--GSPSPSRRRHDNRRR---------SRSKSKPP 144
Score = 30.0 bits (66), Expect = 0.95
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
Query: 82 RHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRST 141
RHSAS SS++ R R + TS S S+G S + S+ A++ +
Sbjct: 65 RHSASSGSSST----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 142 GSPTWHTCENGGSGGPSTRRLR 163
S + + + SG PS R R
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRR 130
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 36.2 bits (82), Expect = 0.013
Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 38 PATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGT 97
P LS PS ++ R GF+ RG+G +A RG H A G A
Sbjct: 269 PRLLSMPSAAARPCGAALPRSGFSGRPRGRGG---AAAGRGSRGEHPACGVGLARGTAPQ 325
Query: 98 PSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGP 157
P+ + R TWTSR ++ CA G R H E P
Sbjct: 326 PASTWALAARPRAGGTWTSRFEAQ-----RGCAHQDGQRRTRDGAGN--HASEPARVWSP 378
Query: 158 STRRLRWRQ 166
RR R R+
Sbjct: 379 PPRRQRPRR 387
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 36.2 bits (82), Expect = 0.013
Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 38 PATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGT 97
P LS PS ++ R GF+ RG+G +A RG H A G A
Sbjct: 269 PRLLSMPSAAARPCGAALPRSGFSGRPRGRGG---AAAGRGSRGEHPACGVGLARGTAPQ 325
Query: 98 PSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGP 157
P+ + R TWTSR ++ CA G R H E P
Sbjct: 326 PASTWALAARPRAGGTWTSRFEAQ-----RGCAHQDGQRRTRDGAGN--HASEPARVWSP 378
Query: 158 STRRLRWRQ 166
RR R R+
Sbjct: 379 PPRRQRPRR 387
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 35.0 bits (79), Expect = 0.029
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 30 KRGTQARK-PATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGS 88
+R T ARK P +PS + LSST +++ R + +R R R S + +
Sbjct: 507 RRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRT 566
Query: 89 SSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPS 128
SS+S+ R +PS G+ ++ R R SR SR S S
Sbjct: 567 SSSSSSR-SPSPGSRSRSRSRSRSRSRSRSQSRSYSSADS 605
Score = 33.1 bits (74), Expect = 0.11
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 44 PSGKVTRRLSSTRRLGFTNTR---RGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSC 100
PS RR++S R+ R GS+ ++ W S SAS S S S R
Sbjct: 501 PSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSR--- 557
Query: 101 GALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRS 140
RRR T TS S S P S +RS + RS
Sbjct: 558 ------SRRRSRTRTSSSSSSRSPSPGSRSRSRSRSRSRS 591
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 33.9 bits (76), Expect = 0.066
Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 9/134 (6%)
Query: 33 TQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
+ +R P+ LS R+ S R G + GS W S + GG + S +
Sbjct: 270 SDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPG 329
Query: 93 TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTCENG 152
+ P +P+ R+ ++ P AR + +PRS S
Sbjct: 330 SAHSPPD----KPSSPSPRVR-----DKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAA 380
Query: 153 GSGGPSTRRLRWRQ 166
G G RR R R+
Sbjct: 381 GGAGRRRRRRRRRR 394
>gi|38569475 metaxin 1 isoform 1 [Homo sapiens]
Length = 466
Score = 33.5 bits (75), Expect = 0.086
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 29 WKRGTQARKPATLSQPSG----KVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHS 84
W R T+ R P + PSG TRR + RR G T R G +W R +R
Sbjct: 35 WPRRTRPRSPEPAA-PSGVRGSTWTRRRDTPRRAGPTALSRYVGHLWMGRRPPSPEARGP 93
Query: 85 ASGSSSASTCRGTPSCGALRP 105
SS+AS R + + + P
Sbjct: 94 VPRSSAASRARRSLASPGISP 114
>gi|38569477 metaxin 1 isoform 2 [Homo sapiens]
Length = 435
Score = 33.5 bits (75), Expect = 0.086
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 29 WKRGTQARKPATLSQPSG----KVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHS 84
W R T+ R P + PSG TRR + RR G T R G +W R +R
Sbjct: 35 WPRRTRPRSPEPAA-PSGVRGSTWTRRRDTPRRAGPTALSRYVGHLWMGRRPPSPEARGP 93
Query: 85 ASGSSSASTCRGTPSCGALRP 105
SS+AS R + + + P
Sbjct: 94 VPRSSAASRARRSLASPGISP 114
>gi|239755599 PREDICTED: hypothetical protein XP_002344618 [Homo
sapiens]
Length = 109
Score = 33.5 bits (75), Expect = 0.086
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 44 PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
PS TR +S R T+ R+ + + R RW SR + S S A++ +P+ +
Sbjct: 19 PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73
Query: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
P R+RR W ++R S S P SCA RST A
Sbjct: 74 APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108
>gi|239750090 PREDICTED: hypothetical protein XP_002347290 [Homo
sapiens]
Length = 109
Score = 33.5 bits (75), Expect = 0.086
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 44 PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
PS TR +S R T+ R+ + + R RW SR + S S A++ +P+ +
Sbjct: 19 PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73
Query: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
P R+RR W ++R S S P SCA RST A
Sbjct: 74 APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108
>gi|239744399 PREDICTED: hypothetical protein XP_002343154 [Homo
sapiens]
Length = 109
Score = 33.5 bits (75), Expect = 0.086
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 44 PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
PS TR +S R T+ R+ + + R RW SR + S S A++ +P+ +
Sbjct: 19 PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73
Query: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
P R+RR W ++R S S P SCA RST A
Sbjct: 74 APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108
>gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo
sapiens]
Length = 790
Score = 33.1 bits (74), Expect = 0.11
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 80 HSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPR 139
H+RH G A T + + T +R S +S +S PPSC + + + R
Sbjct: 512 HTRHLDPGKCQACLQDVTRTFNGICSTCFKRTTAEASSSLS--TSLPPSCHQRSKSDPSR 569
Query: 140 STGSPTWHTCENGGSGGPS 158
SP+ H+C G+ P+
Sbjct: 570 LVRSPSPHSCHRAGNDAPA 588
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 33.1 bits (74), Expect = 0.11
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 14/151 (9%)
Query: 13 TCSPLG------SSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRG 66
TCS +G SS + A G A K S P ++ ++LG +
Sbjct: 95 TCSQIGKPDPPPSSKLNSVAAA-ANGLGAEKDPGRSAPGA--ASAAAALKQLG-DSPAED 150
Query: 67 KGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGP 126
K S ++ GG SGSSS S+ T S + P + ++ C G
Sbjct: 151 KSSFKPYSKGSGGGDSRKDSGSSSVSS---TSSSSSSSPGDKAGFRVPSAACPPFPPHGA 207
Query: 127 PSCARSTGAATPRSTG-SPTWHTCENGGSGG 156
P A S+ ++ S G SP C+NGG G
Sbjct: 208 PVSASSSSSSPGGSRGGSPHHSDCKNGGGVG 238
>gi|158508495 sex comb on midleg-like 4 [Homo sapiens]
Length = 414
Score = 33.1 bits (74), Expect = 0.11
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 78 GGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAAT 137
GG +A G ++ G PS LRP + TS +RC+S P A+ A
Sbjct: 280 GGGPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQDAQD--ARR 337
Query: 138 PRSTGSPTW 146
PRS W
Sbjct: 338 PRSRNPSAW 346
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 32.7 bits (73), Expect = 0.15
Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 10/149 (6%)
Query: 12 TTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIW 71
+TCS S + C+ GT + Q SG +S+ + ++R
Sbjct: 211 STCSCQSSGTSSTSCSCQSSGTSS---TCSCQSSG------TSSTSCSWQSSRTSSTCSC 261
Query: 72 RSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCAR 131
+S+R +SG+SS +C+ + + Q R + S SR SS SC
Sbjct: 262 QSSRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSRTSSTSCSCQS 321
Query: 132 STGAATPRSTGSPTWHT-CENGGSGGPST 159
S ++T S T T C SG ST
Sbjct: 322 SRTSSTCSCQSSGTSSTSCICWSSGTSST 350
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 32.3 bits (72), Expect = 0.19
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 125 GPPSCARSTGAATPRSTGSPTWHTCENGGSGG 156
GPP+ ++ AA +TG+P + ++GG GG
Sbjct: 168 GPPAATATSAAAAAAATGAPATSSSDSGGGGG 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.125 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,453,073
Number of Sequences: 37866
Number of extensions: 423185
Number of successful extensions: 2079
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 1926
Number of HSP's gapped (non-prelim): 230
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.