Guide to the Human Genome
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Name: LOC100291912 Sequence: fasta or formatted (109aa) NCBI GI: 239755599
Description:

PREDICTED: hypothetical protein XP_002344618

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.3         21           3
 C cysteine            2.8          3           1
 D aspartate           0.0          0           0
 E glutamate           1.8          2           1
 F phenylalanine       0.9          1           1
 G glycine             2.8          3           1
 H histidine           0.0          0           0
 I isoleucine          0.9          1           1
 K lysine              3.7          4           1
 L leucine             3.7          4           1
 M methionine          1.8          2           1
 N asparagine          0.9          1           1
 P proline            10.1         11           3
 Q glutamine           0.9          1           1
 R arginine           19.3         21           2
 S serine             18.3         20           2
 T threonine           6.4          7           1
 V valine              1.8          2           1
 W tryptophan          4.6          5           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344618 
LOC100290635          1.000   PREDICTED: hypothetical protein XP_002347290 
LOC100287251          1.000   PREDICTED: hypothetical protein XP_002343154 
SRRM2                 0.102   splicing coactivator subunit SRm300 
LOC100293375          0.066   PREDICTED: hypothetical protein 
LOC100291645          0.061   PREDICTED: hypothetical protein XP_002344930 
LOC100289478          0.061   PREDICTED: hypothetical protein 
LOC100289478          0.061   PREDICTED: hypothetical protein XP_002343478 
SCAF1                 0.061   SR-related CTD-associated factor 1 
LOC730183             0.051   PREDICTED: hypothetical protein 
LOC100130360          0.051   PREDICTED: hypothetical protein 
ARL6IP4               0.051   SRp25 nuclear protein isoform 3 
LOC100293818          0.051   PREDICTED: hypothetical protein 
LOC100287121          0.051   PREDICTED: hypothetical protein 
LOC100287121          0.051   PREDICTED: hypothetical protein XP_002342511 
KIAA1853              0.051   KIAA1853 protein 
LOC100289408          0.046   PREDICTED: hypothetical protein 
LOC100289408          0.046   PREDICTED: hypothetical protein XP_002344217 
MAGED2                0.046   melanoma antigen family D, 2 
MAGED2                0.046   melanoma antigen family D, 2 
MAGED2                0.046   melanoma antigen family D, 2 
FLJ22184              0.046   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.046   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.046   PREDICTED: hypothetical protein LOC80164 
LOC100292227          0.041   PREDICTED: hypothetical protein 
LOC100293501          0.041   PREDICTED: hypothetical protein 
LOC100289692          0.041   PREDICTED: hypothetical protein XP_002347699 
LOC100291178          0.041   PREDICTED: hypothetical protein XP_002347544 
LOC100287811          0.041   PREDICTED: hypothetical protein XP_002344136 
LOC100289466          0.041   PREDICTED: hypothetical protein XP_002342181 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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