Guide to the Human Genome
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Search of human proteins with 239756584

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]
         (349 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]           709   0.0  
gi|239751076 PREDICTED: hypothetical protein [Homo sapiens]           709   0.0  
gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]           709   0.0  
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ...    35   0.100
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ...    35   0.100
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ...    34   0.17 
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ...    34   0.17 
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s...    34   0.17 
gi|148727255 microtubule associated serine/threonine kinase fami...    34   0.17 
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]            34   0.22 
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]            33   0.38 
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo...    33   0.38 
gi|182507165 thymus expressed gene 3-like [Homo sapiens]               33   0.38 
gi|167466198 intercellular adhesion molecule 1 precursor [Homo s...    33   0.50 
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      32   0.65 
gi|239757043 PREDICTED: functional smad suppressing element 18 [...    32   0.65 
gi|239751555 PREDICTED: functional smad suppressing element 18 [...    32   0.65 
gi|239746067 PREDICTED: functional smad suppressing element 18 [...    32   0.65 
gi|188536004 zinc finger protein 469 [Homo sapiens]                    32   0.65 
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]       32   0.65 
gi|116805330 small conductance calcium-activated potassium chann...    32   0.85 
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]            32   0.85 
gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo ...    32   0.85 
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ...    32   0.85 
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ...    32   0.85 
gi|21040251 actin-binding Rho activating protein [Homo sapiens]        32   0.85 
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]         32   1.1  
gi|89027843 PREDICTED: hypothetical protein LOC441328 [Homo sapi...    32   1.1  
gi|51466913 PREDICTED: hypothetical protein [Homo sapiens]             32   1.1  
gi|113419951 PREDICTED: hypothetical protein [Homo sapiens]            32   1.1  

>gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score =  709 bits (1830), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
           MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC
Sbjct: 1   MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60

Query: 61  RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
           RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS
Sbjct: 61  RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120

Query: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
           KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR
Sbjct: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180

Query: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
           QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA
Sbjct: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240

Query: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
           ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR
Sbjct: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300

Query: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
           GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL
Sbjct: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349


>gi|239751076 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score =  709 bits (1830), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
           MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC
Sbjct: 1   MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60

Query: 61  RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
           RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS
Sbjct: 61  RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120

Query: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
           KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR
Sbjct: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180

Query: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
           QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA
Sbjct: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240

Query: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
           ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR
Sbjct: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300

Query: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
           GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL
Sbjct: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349


>gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score =  709 bits (1830), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
           MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC
Sbjct: 1   MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60

Query: 61  RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
           RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS
Sbjct: 61  RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120

Query: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
           KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR
Sbjct: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180

Query: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
           QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA
Sbjct: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240

Query: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
           ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR
Sbjct: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300

Query: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
           GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL
Sbjct: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349


>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
           sapiens]
          Length = 333

 Score = 35.0 bits (79), Expect = 0.100
 Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 21/145 (14%)

Query: 169 RPASVPRLRRARQIKADFTGKVVSERAGLVPVPET---SAA----RRAALGTQGW----G 217
           R A+ P   R  Q ++   G +   + G   VP     SAA    RR+ +    W    G
Sbjct: 161 RSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG 220

Query: 218 PWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLG-HNLGSPSARGPSRSSRENEKEIG 276
             P R +RS   PR  P +  R+E  P    ++  G    G    RGP    R  E   G
Sbjct: 221 RGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGG 280

Query: 277 YALDTKEDPRGGSRDSPEALASLRG 301
            A     + RGG    P  LA +RG
Sbjct: 281 LA-----EVRGG----PGGLAEVRG 296


>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
           sapiens]
          Length = 296

 Score = 35.0 bits (79), Expect = 0.100
 Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 21/145 (14%)

Query: 169 RPASVPRLRRARQIKADFTGKVVSERAGLVPVPET---SAA----RRAALGTQGW----G 217
           R A+ P   R  Q ++   G +   + G   VP     SAA    RR+ +    W    G
Sbjct: 124 RSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG 183

Query: 218 PWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLG-HNLGSPSARGPSRSSRENEKEIG 276
             P R +RS   PR  P +  R+E  P    ++  G    G    RGP    R  E   G
Sbjct: 184 RGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGG 243

Query: 277 YALDTKEDPRGGSRDSPEALASLRG 301
            A     + RGG    P  LA +RG
Sbjct: 244 LA-----EVRGG----PGGLAEVRG 259


>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
           sapiens]
          Length = 229

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 199 PVPETSAARRAALGTQGWGPWPT-----RGQRSPLAPRG 232
           P  ETS ARRA    Q WG WPT     RG+R     RG
Sbjct: 166 PAGETSGARRARGELQAWGAWPTWCGAGRGRRGRGESRG 204


>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
           sapiens]
          Length = 229

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 199 PVPETSAARRAALGTQGWGPWPT-----RGQRSPLAPRG 232
           P  ETS ARRA    Q WG WPT     RG+R     RG
Sbjct: 166 PAGETSGARRARGELQAWGAWPTWCGAGRGRRGRGESRG 204


>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
           sapiens]
          Length = 1283

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 19/121 (15%)

Query: 220 PTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSREN---EKEIG 276
           P    R+P     +P LEV  E QP++R    L     SPS+  P  SS        E+G
Sbjct: 526 PISSPRAPQTRAVKPRLEVSPEAQPTAR----LPSPTDSPSSLPPLPSSSGQASVPSELG 581

Query: 277 YALDTKEDPRGGSRDSPEALASLRGRRAAR-SQSGPI-SLLFDDRATRETKIQPEGAPPF 334
           +  DT+      S +SP   +SL    AA  S S PI S    DR     + + EG P  
Sbjct: 582 HGADTQ------SSESPSVFSSLSSPIAAPISTSTPIESWPLVDRG----QAKSEGPPLL 631

Query: 335 P 335
           P
Sbjct: 632 P 632


>gi|148727255 microtubule associated serine/threonine kinase family
            member 4 isoform a [Homo sapiens]
          Length = 2434

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 56/244 (22%), Positives = 90/244 (36%), Gaps = 37/244 (15%)

Query: 112  KKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPA 171
            K   G E   + L    S   P +E+   ++K+   P L  +  AK+ +++ QP +  P+
Sbjct: 1885 KVRRGVEPKPEALLARRSLQPPGIES-EKSEKLSSFPSLQ-KDGAKEPERKEQPLQRHPS 1942

Query: 172  SVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPR 231
            S+P            T K +S  A        S A     G +     P+   + P  P 
Sbjct: 1943 SIP--------PPPLTAKDLSSPAARQHCSSPSHASGREPGAKPSTAEPSSSPQDPPKP- 1993

Query: 232  GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKE-------- 283
                  V A  + SS      G + G P  + P RS    +  +G A   KE        
Sbjct: 1994 ------VAAHSESSSHKP-RPGPDPGPPKTKHPDRSLSSQKPSVG-ATKGKEPATQSLGG 2045

Query: 284  ---DPRGGSRDSPEALASLRGRR------AARSQSGPISLLFDDRATRETKIQP-EGAPP 333
               + +G S+  P+   +  G +        + + GP   L  DRA  + K QP  G  P
Sbjct: 2046 SSREGKGHSKSGPDVFPATPGSQNKASDGIGQGEGGPSVPLHTDRAPLDAKPQPTSGGRP 2105

Query: 334  FPLI 337
              ++
Sbjct: 2106 LEVL 2109


>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 276

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 119 DSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRR 178
           +SK F W     + PS    P +  +P      GRA     D  L P  G P  +P L  
Sbjct: 140 ESKSFPW----PFSPSTLPLPDSLPLPPS---GGRAGPGWGDSHLAPAWGLPRRLPLLAA 192

Query: 179 ARQIKADFTGKVVSERAGLVPVPETSAAR---RAALGTQGWGPWPTRGQRSPLAPRGR 233
           AR   +   G +    A L  +P   +A    R + G +  G   +R   +PL PRGR
Sbjct: 193 AR---SGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGTPLGPRGR 247


>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 3   SAHRALLTSRSISAL-GTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCCR 61
           SAH  L  +    A  G G GR    GL       P +  PA +     PR P    CC 
Sbjct: 56  SAHLKLSAASDWRAQRGPGEGR----GLRHWPRGAP-VTVPAARRPAPAPRGPKQPGCCA 110

Query: 62  ALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPS 94
           AL           G + G W L G TW    PS
Sbjct: 111 AL---------AGGDTNGEWILRGSTWGLCPPS 134


>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
            sapiens]
          Length = 3312

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 66/232 (28%), Positives = 89/232 (38%), Gaps = 50/232 (21%)

Query: 134  SVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRARQ--IKADFTGKVV 191
            +++TW G+++  G       A+  Q D  L  T G   S+ R +R R+  +K      +V
Sbjct: 2964 ALQTW-GSERRLGLDTSKDAANNNQPDPAL--TSGDETSLGRAQRQRKGILKNRLQYPLV 3020

Query: 192  SERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRAELQPSSRG--- 248
             +  G    PE S  R A LG +     P        A  G  +L      QP+SR    
Sbjct: 3021 PQTRG---APELSWCRAATLGHRAV---PAASYGRIYAGGGTGSLS-----QPASRYSSR 3069

Query: 249  ---DLLLGHNLG--------SPSARGPSRSS----------RENEKEIGYALDTKEDPRG 287
               DLLL   L         +P  R  SR            R   K+ G  L  ++ PR 
Sbjct: 3070 EQLDLLLRRQLSRERLEEAPAPVLRPLSRPGSQECMDAAPGRLEPKDRGSTLPRRQPPR- 3128

Query: 288  GSRDSPEALASLRGRRAARSQSGP---ISLLFDDRATRETKIQPEGAPPFPL 336
               D P A+A   G R A     P   +S L   R TR+   QP   PP PL
Sbjct: 3129 ---DYPGAMAGRFGSRDALDLGAPREWLSTLPPPRRTRDLDPQP---PPLPL 3174


>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
          Length = 629

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 40/119 (33%), Positives = 50/119 (42%), Gaps = 15/119 (12%)

Query: 139 PGAQKVPGGPYLAGRASAKQVDKELQPTRGR------PASVPRLRRARQIKADFTGKVVS 192
           PGAQ    G  L GRA+ +   K    TRGR      P   PR    R   A+ +G+  S
Sbjct: 361 PGAQAATRG--LPGRAARR---KPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGS 415

Query: 193 ERAGLVP--VPETSAARRAALGTQGWGPWPTRGQRSPLAPRGR--PALEVRAELQPSSR 247
            RA        ETS   RA+    G   +PT  +  P  PR R  PA  + A+   S R
Sbjct: 416 PRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCR 474



 Score = 30.4 bits (67), Expect = 2.5
 Identities = 71/317 (22%), Positives = 97/317 (30%), Gaps = 70/317 (22%)

Query: 49  SQPRAPLTTDCCRALWEQRRGSFLLEGGSAGPWGLEG-----RTWSFSRPSRLFL----- 98
           + P AP       A+       +   GGSAGP          R   F  PS L       
Sbjct: 169 ASPSAPEVVGARAAVPRSFSAPYPTAGGSAGPEACSSAERRARAGPFLTPSPLHAVAMRS 228

Query: 99  -----KPPIEVEDDAWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGR 153
                +PP +  D     + + G   +   L     +      T PG     GGP     
Sbjct: 229 PRPCGRPPTDSPDAGGAGRPLDGYISA--LLRRRRRRGAGQPRTSPGG--ADGGPRRQNS 284

Query: 154 ASAKQVDKELQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGT 213
              +  D    P   RPA  P L                ER G  P    + +R  A   
Sbjct: 285 VRQRPPDASPSPGSARPAREPSL----------------ERVGGHPTSPAALSRAWA--- 325

Query: 214 QGWGPWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARG-----PSRSS 268
                W +     P AP   P+        P S  +  L      P A+      P R++
Sbjct: 326 ---SSWESEAAPEPAAPPAAPS-------PPDSPAEGRLVKAQYIPGAQAATRGLPGRAA 375

Query: 269 RENEKEIGYALDTKEDP----------RGGSRDSPEALASLRGRRAARSQSGPISLLFDD 318
           R     +      ++ P          RG   ++     S R R+A+RSQS   SLL   
Sbjct: 376 RRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRSQS-ETSLLGRA 434

Query: 319 RATRETKIQPEGAPPFP 335
            A       P G P +P
Sbjct: 435 SAV------PSGPPKYP 445


>gi|167466198 intercellular adhesion molecule 1 precursor [Homo
           sapiens]
          Length = 532

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 170 PASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLA 229
           PA+ P+L   R ++ D  G VV    GL PV E  A    ALG Q   P  T G  S  A
Sbjct: 215 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSE--AQVHLALGDQRLNPTVTYGNDSFSA 272

Query: 230 PRGRPALEVRAELQPSSR 247
              + ++ V AE + + R
Sbjct: 273 ---KASVSVTAEDEGTQR 287


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 53/198 (26%), Positives = 67/198 (33%), Gaps = 24/198 (12%)

Query: 140 GAQKVPGGPYLAGRASAKQVDKELQPTRGRP-ASVPRLRRARQIKADFTGKVVSERAGLV 198
           G +  PG P   G A  +   + L   RGRP A  P   R         G          
Sbjct: 284 GPKGEPGSPGENG-APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP 342

Query: 199 PVPETSAARRAALGTQG----WGPWPTRGQRSPLAPRGR--PALEVRAELQPSSRGDLL- 251
           P    +   +   G QG     GP   RG+  P  P G   PA    A+ QP ++G    
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 402

Query: 252 --LGHNLGSPSARGPSRSS--------RENEKEIGYA-----LDTKEDPRGGSRDSPEAL 296
             +    G P ARGPS           + N  E G          K +P       P   
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462

Query: 297 ASLRGRRAARSQSGPISL 314
           A   G+R AR + GP  L
Sbjct: 463 AGEEGKRGARGEPGPTGL 480


>gi|239757043 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 996

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)

Query: 103 EVEDDAWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKE 162
           E E D  G K   G+E+ +    +   + D   E   G   V GG +L GR  +++    
Sbjct: 741 EQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSR 800

Query: 163 LQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTR 222
            +      A    L  +R ++ D  GK+    + L P P    A + A G          
Sbjct: 801 DRAPAVAGAFPLGLNSSRLLQED--GKLGDPGSDLPPPPPPPLAPQKASG---------G 849

Query: 223 GQRSPLAPRGRPALEVRAELQPSSR 247
           G  SP +P   P+LE +   + S +
Sbjct: 850 GSSSPGSPVHHPSLEEQPSYKDSQK 874


>gi|239751555 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)

Query: 103 EVEDDAWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKE 162
           E E D  G K   G+E+ +    +   + D   E   G   V GG +L GR  +++    
Sbjct: 741 EQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSR 800

Query: 163 LQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTR 222
            +      A    L  +R ++ D  GK+    + L P P    A + A G          
Sbjct: 801 DRAPAVAGAFPLGLNSSRLLQED--GKLGDPGSDLPPPPPPPLAPQKASG---------G 849

Query: 223 GQRSPLAPRGRPALEVRAELQPSSR 247
           G  SP +P   P+LE +   + S +
Sbjct: 850 GSSSPGSPVHHPSLEEQPSYKDSQK 874


>gi|239746067 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)

Query: 103 EVEDDAWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKE 162
           E E D  G K   G+E+ +    +   + D   E   G   V GG +L GR  +++    
Sbjct: 741 EQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSR 800

Query: 163 LQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTR 222
            +      A    L  +R ++ D  GK+    + L P P    A + A G          
Sbjct: 801 DRAPAVAGAFPLGLNSSRLLQED--GKLGDPGSDLPPPPPPPLAPQKASG---------G 849

Query: 223 GQRSPLAPRGRPALEVRAELQPSSR 247
           G  SP +P   P+LE +   + S +
Sbjct: 850 GSSSPGSPVHHPSLEEQPSYKDSQK 874


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 60/253 (23%), Positives = 91/253 (35%), Gaps = 32/253 (12%)

Query: 108  AWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTR 167
            AWG + +      K+ L     +YD + E+    Q  P GP   GR    +  KE++ T+
Sbjct: 1045 AWGKELILKIVQQKNRL----REYDFASESEEDEQPPPRGPGFRGRRGRGEKRKEVELTQ 1100

Query: 168  GRPASVP-RLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRS 226
            G     P + R+A + +A   G   +        PE     R   G       P+R   +
Sbjct: 1101 GPREDEPQKPRKAARQEAGGDGAPAN--------PEEPGGSRPGPGRSPQARGPSRSLET 1152

Query: 227  PLAPR-GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDP 285
              A R G P    R  + P  +  L +  N  +     PS    +  KE     +T E+ 
Sbjct: 1153 GAAAREGGPKCADRPSVAP--KDPLQVPTNTETSEETRPSLDFPQEAKE----PETAEES 1206

Query: 286  RGGSRDSPEALASLRGRRAARSQSGPISLLFD-------DRATRE-----TKIQPEGAPP 333
               S +  EAL S     A    + P  L+ +       D  T +         P G+ P
Sbjct: 1207 APDSTEFTEALRSPPAACAGEMGASPGLLIPEQPPPSRHDTGTPKPSGSLANTAPHGSSP 1266

Query: 334  FPLITLHLGETSG 346
             P +   LG   G
Sbjct: 1267 TPGVGSLLGGPGG 1279


>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
          Length = 860

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 147 GPYLAGRASAKQVDKELQPT--RGRPA-----SVPRLRRARQIKADFTGKVVSERAGLVP 199
           GP L GR+ A++     Q T  R RPA     S PR  R  ++KA  T      R     
Sbjct: 107 GPGLGGRSGAEEASGHRQDTEERARPAPSRDPSPPRKPRPSRVKAKATAATAKTRPS--- 163

Query: 200 VPETSAARRAAL 211
              T+AAR+ AL
Sbjct: 164 AAATAAARKRAL 175


>gi|116805330 small conductance calcium-activated potassium channel
           protein 3 isoform a [Homo sapiens]
          Length = 731

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 226 SPLAPRGRPALEVRAELQPSSR-------GDLLLGHNLGSPSARGPSRSSRENE 272
           SP A R  P+    A L PSSR        D LLGH+  S +  GP   SR  +
Sbjct: 104 SPTAFRAPPSSNSTAILHPSSRQGSQLNLNDHLLGHSPSSTATSGPGGGSRHRQ 157


>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 214 QGWGPWPTRGQRSPLAPRGRPALEVR---AELQPSSRGDLLLGH-----NLGSPSARGPS 265
           QG G  P +G+ S L  +   A E R    + Q ++  DL  GH     + GSP+   P+
Sbjct: 3   QGLGESPHKGE-SELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPA---PT 58

Query: 266 RSSRENEKEIGYALDTKEDPRGGSRDSPEALASLRGRRAARSQSGP 311
             +    K +G     +  P    R +P A A    RR   S +GP
Sbjct: 59  IRAHTRRKALGPG---ERGPEASPRPAPRARAHAHSRRLPASPTGP 101


>gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo
           sapiens]
          Length = 114

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 139 PGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLV 198
           P     PG P +  R      D+  + +R +P    RLRR R       G VV+   G  
Sbjct: 48  PARSHEPGNPQVEQRRPLASADEPARRSRRQPLGASRLRRRRD-----RGPVVAVNTGPG 102

Query: 199 PVPETSAARRAA 210
            V   S AR AA
Sbjct: 103 RVRSHSVARMAA 114


>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
           sapiens]
          Length = 208

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 214 QGWGPWPTRGQRSPLAPRGRPALEVR---AELQPSSRGDLLLGH-----NLGSPSARGPS 265
           QG G  P +G+ S L  +   A E R    + Q ++  DL  GH     + GSP+   P+
Sbjct: 3   QGLGESPHKGE-SELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPA---PT 58

Query: 266 RSSRENEKEIGYALDTKEDPRGGSRDSPEALASLRGRRAARSQSGP 311
             +    K +G     +  P    R +P A A    RR   S +GP
Sbjct: 59  IRAHTRRKALGPG---ERGPEASPRPAPRARAHAHSRRLPASPTGP 101


>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
           sapiens]
          Length = 208

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 214 QGWGPWPTRGQRSPLAPRGRPALEVR---AELQPSSRGDLLLGH-----NLGSPSARGPS 265
           QG G  P +G+ S L  +   A E R    + Q ++  DL  GH     + GSP+   P+
Sbjct: 3   QGLGESPHKGE-SELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPA---PT 58

Query: 266 RSSRENEKEIGYALDTKEDPRGGSRDSPEALASLRGRRAARSQSGP 311
             +    K +G     +  P    R +P A A    RR   S +GP
Sbjct: 59  IRAHTRRKALGPG---ERGPEASPRPAPRARAHAHSRRLPASPTGP 101


>gi|21040251 actin-binding Rho activating protein [Homo sapiens]
          Length = 381

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 208 RAALGTQGWGPWPTRGQRSPLAPR--GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPS 265
           R A    GW P  T  Q SP AP+    P    +A+  P S   L  GH  G  S + P 
Sbjct: 43  RQAQEPTGWLPGGT--QDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAP- 99

Query: 266 RSSRENEKEIGYALDTKEDPRGG 288
             S   +KE+   + +K   RGG
Sbjct: 100 EVSHIKKKEVSKTVVSKTYERGG 122


>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
          Length = 365

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 68/244 (27%), Positives = 89/244 (36%), Gaps = 23/244 (9%)

Query: 20  GRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCCRALWEQRRGS-FLLEGGSA 78
           G G D        + A P + SP +      P     +    AL  Q R S F      A
Sbjct: 118 GEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKA 177

Query: 79  GPWGLEGRTWSFSR-----PSRLFLKPPIEVEDDAWGIKKMTGKEDSKDFLWNGPSQYDP 133
           GP GL    +S S      P  L+L       D   G+    G  ++   L++G    +P
Sbjct: 178 GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQ--NP 235

Query: 134 SVETWPGAQK-----VPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRA-RQIKADFT 187
                PG        +PGGP +   A A++V +   P R  P S   L  + R   A  T
Sbjct: 236 CSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPAT 295

Query: 188 GKVVSERAGLVPVPETSAARRAALGTQGWG-PWPTR--GQRSP--LAPRGRPALEVRAEL 242
               S      P P  S      LG    G PWPT   G+RSP   +P   P    RA  
Sbjct: 296 FLRPSPIPCSSPGPWQSL---CGLGPPCAGCPWPTAGPGRRSPGGTSPERSPG-TARARG 351

Query: 243 QPSS 246
            P+S
Sbjct: 352 DPTS 355


>gi|89027843 PREDICTED: hypothetical protein LOC441328 [Homo
           sapiens]
          Length = 464

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 217 GPWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIG 276
           GP P     +   PR  P L  R+  + S RG +L   +    ++   S S    E++ G
Sbjct: 148 GPMPVH--TTSKRPRVDPVLADRSATEMSGRGSVLASLSPLRKASLSSSSSLGPKERQTG 205

Query: 277 YALD-------------------TKEDPRGGSRDSPEALASLRG-RRAARSQS 309
            A D                   T   P GG R+ P+A +   G  +AAR Q+
Sbjct: 206 AAADIPQPAFRHQGPEPLLVVKPTHSSPEGGCREVPQAASKTHGLLQAARPQA 258


>gi|51466913 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 217 GPWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIG 276
           GP P     +   PR  P L  R+  + S RG +L   +    ++   S S    E++ G
Sbjct: 148 GPMPVH--TTSKRPRVDPVLADRSAAEMSGRGSVLASLSPLRKASLSSSSSLGPKERQTG 205

Query: 277 YALD-------------------TKEDPRGGSRDSPEALASLRG-RRAARSQS 309
            A D                   T   P GG R+ P+A +   G  +AAR Q+
Sbjct: 206 AAADMPQPAVRHQGREPLLVVKPTHSSPEGGCREVPQAASKTHGLLQAARPQA 258


>gi|113419951 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 217 GPWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIG 276
           GP P     +   PR  P L  R+  + S RG +L   +    ++   S S    E++ G
Sbjct: 148 GPMPVH--TTSKRPRVDPVLADRSAAEMSGRGSVLASLSPLRKASLSSSSSLGPKERQTG 205

Query: 277 YALD-------------------TKEDPRGGSRDSPEALASLRG-RRAARSQS 309
            A D                   T   P GG R+ P+A +   G  +AAR Q+
Sbjct: 206 AAADMPQPAVRHQGREPLLVVKPTHSSPEGGCREVPQAASKTHGLLQAARPQA 258


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,168,735
Number of Sequences: 37866
Number of extensions: 904868
Number of successful extensions: 2693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 2640
Number of HSP's gapped (non-prelim): 167
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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