Guide to the Human Genome
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Name: LOC642799 Sequence: fasta or formatted (317aa) NCBI GI: 239745418
Description:

PREDICTED: similar to GPS, PLAT and transmembrane domain-containing protein FLJ00285

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         18           2
 C cysteine            2.5          8           1
 D aspartate           3.5         11           1
 E glutamate           5.7         18           2
 F phenylalanine       4.1         13           2
 G glycine             5.0         16           2
 H histidine           4.7         15           2
 I isoleucine          5.0         16           2
 K lysine              8.2         26           1
 L leucine             9.1         29           2
 M methionine          2.5          8           1
 N asparagine          3.2         10           1
 P proline             4.4         14           2
 Q glutamine           5.0         16           2
 R arginine            9.5         30           3
 S serine              6.6         21           1
 T threonine           5.4         17           2
 V valine              6.9         22           1
 W tryptophan          0.6          2           1
 Y tyrosine            2.2          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to GPS, PLAT and transmembrane d... 
LOC642778             1.000   PREDICTED: similar to GPS, PLAT and transmembrane d...
LOC100288332          0.985   PREDICTED: hypothetical protein XP_002343465 
NPIP                  0.590   nuclear pore complex interacting protein 
LOC339047             0.585   hypothetical protein LOC339047 
NPIPL2                0.483   PREDICTED: nuclear pore complex interacting protein...
LOC729978             0.439   PREDICTED: NPIP-like protein 2 isoform 2 
LOC729602             0.428   PREDICTED: NPIP-like protein ENSP00000283050 isofor...
LOC728888             0.425   PREDICTED: similar to acyl-CoA synthetase medium-ch...
LOC100132247          0.422   hypothetical protein LOC100132247 
NPIPL3                0.422   nuclear pore complex interacting protein-like 3 [Ho...
LOC729602             0.405   PREDICTED: hypothetical protein LOC283846 
LOC730153             0.401   PREDICTED: similar to NPIP-like protein ENSP0000034...
LOC728741             0.381   PREDICTED: hypothetical protein 
LOC728734             0.354   PREDICTED: similar to NPIP-like protein ENSP0000028...
NPIPL1                0.352   PREDICTED: nuclear pore complex interacting protein...
ACSM1                 0.061   acyl-CoA synthetase medium-chain family member 1 [H...
ACSM2A                0.050   acyl-CoA synthetase medium-chain family member 2A [H...
LOC100291873          0.050   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
LOC100291873          0.050   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
ACSM2B                0.050   acyl-CoA synthetase medium-chain family member 2B [...
ACSM2B                0.050   acyl-CoA synthetase medium-chain family member 2B [...
ACSM5                 0.042   acyl-CoA synthetase medium-chain family member 5 [Ho...
ACSM3                 0.040   SA hypertension-associated homolog isoform 1 
ACSM4                 0.023   acyl-CoA synthetase medium-chain family member 4 [H...
MIA3                  0.018   melanoma inhibitory activity family, member 3 [Homo...
BOD1L                 0.016   biorientation of chromosomes in cell division 1-like...
CCDC34                0.016   coiled-coil domain containing 34 isoform 1 
MINK1                 0.016   misshapen/NIK-related kinase isoform 4 
MINK1                 0.016   misshapen/NIK-related kinase isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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