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Search of human proteins with 239756293
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756293 PREDICTED: hypothetical protein [Homo sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756293 PREDICTED: hypothetical protein [Homo sapiens] 531 e-151
gi|239745232 PREDICTED: hypothetical protein XP_002343394 [Homo ... 531 e-151
gi|239750869 PREDICTED: hypothetical protein XP_002347589 [Homo ... 465 e-131
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 36 0.041
gi|239753057 PREDICTED: hypothetical protein XP_002345334 [Homo ... 35 0.071
gi|239747608 PREDICTED: hypothetical protein [Homo sapiens] 35 0.071
gi|239741483 PREDICTED: hypothetical protein XP_002342212 [Homo ... 35 0.071
gi|239754209 PREDICTED: hypothetical protein [Homo sapiens] 32 0.46
gi|239748740 PREDICTED: hypothetical protein [Homo sapiens] 32 0.46
gi|239787092 A20-binding inhibitor of NF-kappaB activation 2 iso... 32 0.60
gi|38569417 alanyl-tRNA synthetase 2, mitochondrial [Homo sapiens] 31 1.3
gi|25777602 proteasome 26S non-ATPase subunit 2 [Homo sapiens] 31 1.3
gi|116235474 LKB1 interacting protein [Homo sapiens] 30 1.7
gi|50845418 WNK lysine deficient protein kinase 3 isoform 1 [Hom... 29 5.1
gi|50845416 WNK lysine deficient protein kinase 3 isoform 2 [Hom... 29 5.1
gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens] 29 5.1
gi|224922791 amidohydrolase domain containing 2 isoform 2 [Homo ... 28 6.6
gi|21361513 amidohydrolase domain containing 2 isoform 1 [Homo s... 28 6.6
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 28 8.6
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 28 8.6
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 28 8.6
>gi|239756293 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 531 bits (1368), Expect = e-151
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MPWQKLGPYPPPEDLLSMKDWPVLGQILDRVQQRHRPPRKVACVLTFPLGDARAEVLQAH 60
MPWQKLGPYPPPEDLLSMKDWPVLGQILDRVQQRHRPPRKVACVLTFPLGDARAEVLQAH
Sbjct: 1 MPWQKLGPYPPPEDLLSMKDWPVLGQILDRVQQRHRPPRKVACVLTFPLGDARAEVLQAH 60
Query: 61 LELVEAIGAHGSLQALGLLLAQAAERLAQETVHVQHLLVRGVALHPLHQRAARADALQHS 120
LELVEAIGAHGSLQALGLLLAQAAERLAQETVHVQHLLVRGVALHPLHQRAARADALQHS
Sbjct: 61 LELVEAIGAHGSLQALGLLLAQAAERLAQETVHVQHLLVRGVALHPLHQRAARADALQHS 120
Query: 121 IQAAQPTGHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVH 180
IQAAQPTGHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVH
Sbjct: 121 IQAAQPTGHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVH 180
Query: 181 LRVNRAKGTILLLQRLRHGVQLLLSLLDLCADVALELTVAAVKERARAAQRLGTSSAVDA 240
LRVNRAKGTILLLQRLRHGVQLLLSLLDLCADVALELTVAAVKERARAAQRLGTSSAVDA
Sbjct: 181 LRVNRAKGTILLLQRLRHGVQLLLSLLDLCADVALELTVAAVKERARAAQRLGTSSAVDA 240
Query: 241 AQRRGAVVGVGAEDVVGLAGAVQELTHRLVAQLC 274
AQRRGAVVGVGAEDVVGLAGAVQELTHRLVAQLC
Sbjct: 241 AQRRGAVVGVGAEDVVGLAGAVQELTHRLVAQLC 274
>gi|239745232 PREDICTED: hypothetical protein XP_002343394 [Homo
sapiens]
Length = 274
Score = 531 bits (1368), Expect = e-151
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MPWQKLGPYPPPEDLLSMKDWPVLGQILDRVQQRHRPPRKVACVLTFPLGDARAEVLQAH 60
MPWQKLGPYPPPEDLLSMKDWPVLGQILDRVQQRHRPPRKVACVLTFPLGDARAEVLQAH
Sbjct: 1 MPWQKLGPYPPPEDLLSMKDWPVLGQILDRVQQRHRPPRKVACVLTFPLGDARAEVLQAH 60
Query: 61 LELVEAIGAHGSLQALGLLLAQAAERLAQETVHVQHLLVRGVALHPLHQRAARADALQHS 120
LELVEAIGAHGSLQALGLLLAQAAERLAQETVHVQHLLVRGVALHPLHQRAARADALQHS
Sbjct: 61 LELVEAIGAHGSLQALGLLLAQAAERLAQETVHVQHLLVRGVALHPLHQRAARADALQHS 120
Query: 121 IQAAQPTGHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVH 180
IQAAQPTGHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVH
Sbjct: 121 IQAAQPTGHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVH 180
Query: 181 LRVNRAKGTILLLQRLRHGVQLLLSLLDLCADVALELTVAAVKERARAAQRLGTSSAVDA 240
LRVNRAKGTILLLQRLRHGVQLLLSLLDLCADVALELTVAAVKERARAAQRLGTSSAVDA
Sbjct: 181 LRVNRAKGTILLLQRLRHGVQLLLSLLDLCADVALELTVAAVKERARAAQRLGTSSAVDA 240
Query: 241 AQRRGAVVGVGAEDVVGLAGAVQELTHRLVAQLC 274
AQRRGAVVGVGAEDVVGLAGAVQELTHRLVAQLC
Sbjct: 241 AQRRGAVVGVGAEDVVGLAGAVQELTHRLVAQLC 274
>gi|239750869 PREDICTED: hypothetical protein XP_002347589 [Homo
sapiens]
Length = 354
Score = 465 bits (1197), Expect = e-131
Identities = 244/245 (99%), Positives = 245/245 (100%)
Query: 30 RVQQRHRPPRKVACVLTFPLGDARAEVLQAHLELVEAIGAHGSLQALGLLLAQAAERLAQ 89
+VQQRHRPPRKVACVLTFPLGDARAEVLQAHLELVEAIGAHGSLQALGLLLAQAAERLAQ
Sbjct: 110 KVQQRHRPPRKVACVLTFPLGDARAEVLQAHLELVEAIGAHGSLQALGLLLAQAAERLAQ 169
Query: 90 ETVHVQHLLVRGVALHPLHQRAARADALQHSIQAAQPTGHLLVVALVPRVHSLQQLALLS 149
ETVHVQHLLVRGVALHPLHQRAARADALQHSIQAAQPTGHLLVVALVPRVHSLQQLALLS
Sbjct: 170 ETVHVQHLLVRGVALHPLHQRAARADALQHSIQAAQPTGHLLVVALVPRVHSLQQLALLS 229
Query: 150 PHVSYHLAHALADQLLGLGTRAAQLADGRVHLRVNRAKGTILLLQRLRHGVQLLLSLLDL 209
PHVSYHLAHALADQLLGLGTRAAQLADGRVHLRVNRAKGTILLLQRLRHGVQLLLSLLDL
Sbjct: 230 PHVSYHLAHALADQLLGLGTRAAQLADGRVHLRVNRAKGTILLLQRLRHGVQLLLSLLDL 289
Query: 210 CADVALELTVAAVKERARAAQRLGTSSAVDAAQRRGAVVGVGAEDVVGLAGAVQELTHRL 269
CADVALELTVAAVKERARAAQRLGTSSAVDAAQRRGAVVGVGAEDVVGLAGAVQELTHRL
Sbjct: 290 CADVALELTVAAVKERARAAQRLGTSSAVDAAQRRGAVVGVGAEDVVGLAGAVQELTHRL 349
Query: 270 VAQLC 274
VAQLC
Sbjct: 350 VAQLC 354
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 35.8 bits (81), Expect = 0.041
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 145 LALLSPHVSYHLAHALADQLLG-----LGTRAAQLADGRVHLRVNR------AKGTILLL 193
L LLS H++ LA +A +LG L +L D V + + G +LL
Sbjct: 795 LKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETLSVGATMLL 854
Query: 194 QRLRHGVQLLLSLLDLCAD----------VALELTVAAVKERARAAQRLGTSSAVDAAQR 243
LR ++LL SLL D + L++ + ++++ A LG SS DAA
Sbjct: 855 PPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVASLLGYSSPSDAADL 914
Query: 244 RGAVVGVG 251
G G
Sbjct: 915 SSVCTGYG 922
>gi|239753057 PREDICTED: hypothetical protein XP_002345334 [Homo
sapiens]
Length = 212
Score = 35.0 bits (79), Expect = 0.071
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 74 QALGLLLAQAAERLAQETVHVQHLLVRGVALHPL----HQRAARADALQHSI--QAAQPT 127
Q L L A A ++QE +QH ++ LHPL H AA A AL H +
Sbjct: 105 QGLRGLPAGAHTLISQEARGLQHPVLG--PLHPLQVNVHLLAAAAGALGHWCFRVTVALS 162
Query: 128 GHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVHL 181
HL +VP+V +Q L L P + ADQL+G G + AQ+ HL
Sbjct: 163 SHL---PIVPKVQGVQ-LQLGLPKPGWRPLRGKADQLVGAGRQRAQMLPLHRHL 212
>gi|239747608 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 35.0 bits (79), Expect = 0.071
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 74 QALGLLLAQAAERLAQETVHVQHLLVRGVALHPL----HQRAARADALQHSI--QAAQPT 127
Q L L A A ++QE +QH ++ LHPL H AA A AL H +
Sbjct: 105 QGLRGLPAGAHTLISQEARGLQHPVLG--PLHPLQVNVHLLAAAAGALGHWCFRVTVALS 162
Query: 128 GHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVHL 181
HL +VP+V +Q L L P + ADQL+G G + AQ+ HL
Sbjct: 163 SHL---PIVPKVQGVQ-LQLGLPKPGWRPLRGKADQLVGAGRQRAQMLPLHRHL 212
>gi|239741483 PREDICTED: hypothetical protein XP_002342212 [Homo
sapiens]
Length = 212
Score = 35.0 bits (79), Expect = 0.071
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 74 QALGLLLAQAAERLAQETVHVQHLLVRGVALHPL----HQRAARADALQHSI--QAAQPT 127
Q L L A A ++QE +QH ++ LHPL H AA A AL H +
Sbjct: 105 QGLRGLPAGAHTLISQEARGLQHPVLG--PLHPLQVNVHLLAAAAGALGHWCFRVTVALS 162
Query: 128 GHLLVVALVPRVHSLQQLALLSPHVSYHLAHALADQLLGLGTRAAQLADGRVHL 181
HL +VP+V +Q L L P + ADQL+G G + AQ+ HL
Sbjct: 163 SHL---PIVPKVQGVQ-LQLGLPKPGWRPLRGKADQLVGAGRQRAQMLPLHRHL 212
>gi|239754209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 32.3 bits (72), Expect = 0.46
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 49 LGDARAEVLQA---------HLELVEAIGAHGSLQALGLLLAQAAERLAQETVHVQHLLV 99
LGDA ++L HL+ AHG L +G L + A L +HV+HLLV
Sbjct: 72 LGDALEQLLDGRAVADEGGRHLQAAGRDVAHGRLHVVGDPLHEVAAVL---VLHVEHLLV 128
Query: 100 RGVALHPLHQRAARADALQHSIQA 123
H LH AA D + A
Sbjct: 129 -----HLLHGHAAPEDGSHRQVAA 147
>gi|239748740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 32.3 bits (72), Expect = 0.46
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 49 LGDARAEVLQA---------HLELVEAIGAHGSLQALGLLLAQAAERLAQETVHVQHLLV 99
LGDA ++L HL+ AHG L +G L + A L +HV+HLLV
Sbjct: 72 LGDALEQLLDGRAVADEGGRHLQAAGRDVAHGRLHVVGDPLHEVAAVL---VLHVEHLLV 128
Query: 100 RGVALHPLHQRAARADALQHSIQA 123
H LH AA D + A
Sbjct: 129 -----HLLHGHAAPEDGSHRQVAA 147
>gi|239787092 A20-binding inhibitor of NF-kappaB activation 2
isoform 1 [Homo sapiens]
Length = 429
Score = 32.0 bits (71), Expect = 0.60
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 50 GDARAEVLQAHLELVEAIGAHGSLQALGLLLAQA-------AERLAQETVHVQHLLVRGV 102
GDA ++ A LE V Q G AQ ERL ++ +Q LL +
Sbjct: 57 GDAAPSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQ-- 114
Query: 103 ALHPLHQRAARADALQHSI---QAAQPTGHLLVVALVPRVHSLQQLALLSPHVSYHLAHA 159
P H+R L+ S+ + A+ +L +L H L++ + H+ HLA
Sbjct: 115 ---PQHEREKEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKC 171
Query: 160 LADQ 163
L ++
Sbjct: 172 LDER 175
>gi|38569417 alanyl-tRNA synthetase 2, mitochondrial [Homo sapiens]
Length = 985
Score = 30.8 bits (68), Expect = 1.3
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 26/166 (15%)
Query: 46 TFPLGDARAEVLQAHLELVEAIGAHGSLQALGLLLAQA---AERLAQETVHVQHLLVRGV 102
++ G A+VLQ + E A+ + G Q GLLL + AE+ Q + RG
Sbjct: 525 SYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYAEQGGQAS-------DRGY 577
Query: 103 ALHPLHQRAARADALQHSIQAAQPTGHLLVVALVP-----------RVHSLQQLALLSPH 151
+ RA + D L +A G +L A+ P V +L ++ H
Sbjct: 578 LV-----RAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRLGCMAKH 632
Query: 152 VSYHLAHALADQLLGLGTRAAQLADGRVHLRVNRAKGTILLLQRLR 197
+ HL + Q LG GT LR++ T L ++LR
Sbjct: 633 TATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLR 678
>gi|25777602 proteasome 26S non-ATPase subunit 2 [Homo sapiens]
Length = 908
Score = 30.8 bits (68), Expect = 1.3
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 26/152 (17%)
Query: 67 IGAHGSLQALGLLLAQAAERLAQETV--HVQHLLVRGVALHPLHQRAARADALQHSIQAA 124
+GAH + LG+ L E + E HLL G + +++ A
Sbjct: 646 MGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYG----------------EPTLRRA 689
Query: 125 QPTGHLLVVALVPRVHSLQQLALLS----PHVSYHLAHALADQLLGLGTRAAQLADGRVH 180
P L+ PR++ L L+ S P VSY+ A+ ++G GT A+LA
Sbjct: 690 VPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMG--MVGSGTNNARLAAMLRQ 747
Query: 181 LRVNRAKG-TILLLQRLRHGV-QLLLSLLDLC 210
L AK L + RL G+ L L LC
Sbjct: 748 LAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLC 779
>gi|116235474 LKB1 interacting protein [Homo sapiens]
Length = 1099
Score = 30.4 bits (67), Expect = 1.7
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 94 VQHLLVRGVALHPLHQRAARADALQHSI--QAAQPTGHLLVVALVPRVHSLQQLALLSPH 151
++HL +RGV LH LH L+ I ++ Q LL +L LALLS +
Sbjct: 121 LRHLELRGVPLHCLHGLRGIYSQLETLICSRSLQALEELLSACGGDFCSALPWLALLSAN 180
Query: 152 VSYHLAHALADQLLGLGT-RAAQLADGRVHLRVNRAKGTILLLQRLRH 198
SY+ AL L L R L+ H +V +G ++ L L H
Sbjct: 181 FSYNALTALDSSLRLLSALRFLNLS----HNQVQDCQGFLMDLCELHH 224
>gi|50845418 WNK lysine deficient protein kinase 3 isoform 1 [Homo
sapiens]
Length = 1800
Score = 28.9 bits (63), Expect = 5.1
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 102 VALHPLHQRAARADAL-QHSIQAAQPTGHLLVVALV---PRVHSLQQLALLSPHVS 153
+ ++P HQ A++ADAL H ++ Q +G+ L P+ S+QQ A+ + +S
Sbjct: 1002 IPVYPCHQTASQADALMSHPGESTQTSGNSLTTLAFDQKPQTLSVQQPAMDAEFIS 1057
>gi|50845416 WNK lysine deficient protein kinase 3 isoform 2 [Homo
sapiens]
Length = 1743
Score = 28.9 bits (63), Expect = 5.1
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 102 VALHPLHQRAARADAL-QHSIQAAQPTGHLLVVALV---PRVHSLQQLALLSPHVS 153
+ ++P HQ A++ADAL H ++ Q +G+ L P+ S+QQ A+ + +S
Sbjct: 1002 IPVYPCHQTASQADALMSHPGESTQTSGNSLTTLAFDQKPQTLSVQQPAMDAEFIS 1057
>gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens]
Length = 1200
Score = 28.9 bits (63), Expect = 5.1
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 85 ERLAQETVHVQHLLVRGVA----LHPLHQRAARADALQHSIQAAQPTGHLLVVALVPRVH 140
E+L E V ++LLVRG++ +H L +R ++A LL VP V
Sbjct: 415 EKLKSEVVSPRYLLVRGISGEQRIHLLLERGIGEHQKTQGLRAIMNNRELLDQCQVPAVG 474
Query: 141 SLQQLAL 147
SL +AL
Sbjct: 475 SLICVAL 481
>gi|224922791 amidohydrolase domain containing 2 isoform 2 [Homo
sapiens]
Length = 594
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 105 HP-LHQRAARADALQHSIQAAQPTGHLLVVALVPRVHSLQQL--ALLSPHVSYHLAHALA 161
HP H R+ ADA Q + P ++ +V L P + ++ AL + + L H++A
Sbjct: 155 HPEAHLRSFEADAFQDLLATYGPLDNVRIVTLAPELGRSHEVIRALTARGICVSLGHSVA 214
Query: 162 D 162
D
Sbjct: 215 D 215
>gi|21361513 amidohydrolase domain containing 2 isoform 1 [Homo
sapiens]
Length = 439
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 105 HP-LHQRAARADALQHSIQAAQPTGHLLVVALVPRVHSLQQL--ALLSPHVSYHLAHALA 161
HP H R+ ADA Q + P ++ +V L P + ++ AL + + L H++A
Sbjct: 155 HPEAHLRSFEADAFQDLLATYGPLDNVRIVTLAPELGRSHEVIRALTARGICVSLGHSVA 214
Query: 162 D 162
D
Sbjct: 215 D 215
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 36 RPPRKVACVLTFPLGDARAEVLQAHLELVEAIGAHGSLQA 75
+PP + L LG++ A + QA L+L E GA GS +A
Sbjct: 486 QPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEA 525
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 36 RPPRKVACVLTFPLGDARAEVLQAHLELVEAIGAHGSLQA 75
+PP + L LG++ A + QA L+L E GA GS +A
Sbjct: 486 QPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEA 525
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 36 RPPRKVACVLTFPLGDARAEVLQAHLELVEAIGAHGSLQA 75
+PP + L LG++ A + QA L+L E GA GS +A
Sbjct: 486 QPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEA 525
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,698,272
Number of Sequences: 37866
Number of extensions: 391431
Number of successful extensions: 1466
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 21
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.