Guide to the Human Genome
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Name: LOC100287646 Sequence: fasta or formatted (274aa) NCBI GI: 239745232
Description:

PREDICTED: hypothetical protein XP_002343394

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         42           2
 C cysteine            1.1          3           1
 D aspartate           4.0         11           1
 E glutamate           3.6         10           1
 F phenylalanine       0.4          1           1
 G glycine             6.9         19           1
 H histidine           5.8         16           1
 I isoleucine          1.5          4           1
 K lysine              1.8          5           1
 L leucine            19.0         52           3
 M methionine          0.7          2           1
 N asparagine          0.4          1           1
 P proline             4.7         13           3
 Q glutamine           8.4         23           2
 R arginine            8.0         22           2
 S serine              3.3          9           2
 T threonine           2.9          8           1
 V valine             10.6         29           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343394 
LOC100292799          1.000   PREDICTED: hypothetical protein 
LOC100289819          0.870   PREDICTED: hypothetical protein XP_002347589 
HERC1                 0.022   guanine nucleotide exchange factor p532 
LOC100291804          0.020   PREDICTED: hypothetical protein XP_002345334 
LOC100287022          0.020   PREDICTED: hypothetical protein 
LOC100288204          0.020   PREDICTED: hypothetical protein XP_002342212 
LOC100133479          0.014   PREDICTED: hypothetical protein 
LOC100133479          0.014   PREDICTED: hypothetical protein 
TNIP2                 0.014   A20-binding inhibitor of NF-kappaB activation 2 iso...
AARS2                 0.012   alanyl-tRNA synthetase 2, mitochondrial 
PSMD2                 0.012   proteasome 26S non-ATPase subunit 2 
STK11IP               0.010   LKB1 interacting protein 
WNK3                  0.008   WNK lysine deficient protein kinase 3 isoform 1 [Hom...
WNK3                  0.008   WNK lysine deficient protein kinase 3 isoform 2 [Hom...
NLRP5                 0.008   NACHT, LRR and PYD containing protein 5 
AMDHD2                0.006   amidohydrolase domain containing 2 isoform 2 
AMDHD2                0.006   amidohydrolase domain containing 2 isoform 1 
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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