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Search of human proteins with 239756148
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756148 PREDICTED: hypothetical protein XP_002344839 [Homo
sapiens]
(174 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756148 PREDICTED: hypothetical protein XP_002344839 [Homo ... 353 5e-98
gi|239750695 PREDICTED: hypothetical protein [Homo sapiens] 157 6e-39
gi|239745003 PREDICTED: hypothetical protein XP_002343328 [Homo ... 157 6e-39
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.095
gi|169212138 PREDICTED: similar to hCG2040688 [Homo sapiens] 33 0.12
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 32 0.28
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens] 32 0.28
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ... 32 0.28
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 32 0.36
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 32 0.36
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 32 0.36
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 32 0.36
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 31 0.47
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 31 0.47
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 31 0.47
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 31 0.47
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens] 31 0.62
gi|169214821 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239754006 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169215021 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169211729 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239748537 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169214546 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169210847 PREDICTED: similar to hCG2040688 [Homo sapiens] 30 1.1
gi|239742520 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 30 1.1
gi|212274327 transmembrane protein 151B [Homo sapiens] 29 1.8
gi|122937259 solute carrier family 45, member 4 [Homo sapiens] 29 1.8
>gi|239756148 PREDICTED: hypothetical protein XP_002344839 [Homo
sapiens]
Length = 174
Score = 353 bits (905), Expect = 5e-98
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MATTVFHFMTVCKPPWEVPSILATTVAREEMDRRGVGVGAGAGGCPLVALLGWHTGAAAG 60
MATTVFHFMTVCKPPWEVPSILATTVAREEMDRRGVGVGAGAGGCPLVALLGWHTGAAAG
Sbjct: 1 MATTVFHFMTVCKPPWEVPSILATTVAREEMDRRGVGVGAGAGGCPLVALLGWHTGAAAG 60
Query: 61 TATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAIASGGLSPVERDCLAFLRQENKTS 120
TATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAIASGGLSPVERDCLAFLRQENKTS
Sbjct: 61 TATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAIASGGLSPVERDCLAFLRQENKTS 120
Query: 121 WRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRARVSAAQNLPGRSAPIVAPPL 174
WRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRARVSAAQNLPGRSAPIVAPPL
Sbjct: 121 WRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRARVSAAQNLPGRSAPIVAPPL 174
>gi|239750695 PREDICTED: hypothetical protein [Homo sapiens]
Length = 80
Score = 157 bits (396), Expect = 6e-39
Identities = 78/80 (97%), Positives = 78/80 (97%)
Query: 95 MAIASGGLSPVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 154
MAIASGGLS VERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA
Sbjct: 1 MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 60
Query: 155 RVSAAQNLPGRSAPIVAPPL 174
RVSAAQNLPG SAPIVAPPL
Sbjct: 61 RVSAAQNLPGWSAPIVAPPL 80
>gi|239745003 PREDICTED: hypothetical protein XP_002343328 [Homo
sapiens]
Length = 80
Score = 157 bits (396), Expect = 6e-39
Identities = 78/80 (97%), Positives = 78/80 (97%)
Query: 95 MAIASGGLSPVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 154
MAIASGGLS VERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA
Sbjct: 1 MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 60
Query: 155 RVSAAQNLPGRSAPIVAPPL 174
RVSAAQNLPG SAPIVAPPL
Sbjct: 61 RVSAAQNLPGWSAPIVAPPL 80
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.5 bits (75), Expect = 0.095
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 8/151 (5%)
Query: 25 TVAREEMDRRGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTSKKDAAPSG 84
T EE D+ G G G G GG A A+ +++ S +S ++ S
Sbjct: 2581 TEGEEEGDKNGDG-GCGTGGRNCSAASS--RAASPASSSSSSSSSSSSSSSSSSSSSSSS 2637
Query: 85 SVSLCAAATSMAIASGGLSPVERDCLAFLRQENKTSWRKVSLHS---PAPSRRPGLAATA 141
S S ++++S + +S S + + T+ S S AP+ G +A A
Sbjct: 2638 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQA 2697
Query: 142 SWVHSVAKRCYRARVSAAQNLPGRSAPIVAP 172
+ K+ +AR SA + PG+ P P
Sbjct: 2698 ALPTKATKQAGKARPSA--HSPGKKTPAPQP 2726
>gi|169212138 PREDICTED: similar to hCG2040688 [Homo sapiens]
Length = 247
Score = 33.1 bits (74), Expect = 0.12
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 87 SLCAAATSMAIASGGLSPV-----------ERDCLAFLRQENKTSWRKVSLHSPAPSRRP 135
SLC S+ + G + + E+D L + ++ +WR + LH PS RP
Sbjct: 79 SLCPVPLSLCLGPVGCARIQTYQAQEVGRMEKD----LGRSSRNTWRTLCLHLGHPSLRP 134
Query: 136 GLAATASWVHS 146
GL A A HS
Sbjct: 135 GLKAGAHHTHS 145
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 32.0 bits (71), Expect = 0.28
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 28 REEMDRRGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTSKKDAAPSGSVS 87
R E R+G+ + A AGG A+LG G AG E E S RE+ + S +
Sbjct: 28 RSEGRRKGL-LAAEAGG----AVLGG--GRRAGRRAEPPEPSYSRERRETMEGKGGWSAA 80
Query: 88 LCAAATSMAIASGGLSPVER--DCLAFLRQENKTSWRKVSLHSPAPSR 133
L + A A L P R C A L + S R+ LH R
Sbjct: 81 LGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGR 128
>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 32.0 bits (71), Expect = 0.28
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 28 REEMDRRGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTSKKDAAPSGSVS 87
R E R+G+ + A AGG A+LG G AG E E S RE+ + S +
Sbjct: 28 RSEGRRKGL-LAAEAGG----AVLGG--GRRAGRRAEPPEPSYSRERRETMEGKGGWSAA 80
Query: 88 LCAAATSMAIASGGLSPVER--DCLAFLRQENKTSWRKVSLHSPAPSR 133
L + A A L P R C A L + S R+ LH R
Sbjct: 81 LGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGR 128
>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
sapiens]
Length = 217
Score = 32.0 bits (71), Expect = 0.28
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 28 REEMDRRGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTSKKDAAPSGSVS 87
R E R+G+ + A AGG A+LG G AG E E S RE+ + S +
Sbjct: 28 RSEGRRKGL-LAAEAGG----AVLGG--GRRAGRRAEPPEPSYSRERRETMEGKGGWSAA 80
Query: 88 LCAAATSMAIASGGLSPVER--DCLAFLRQENKTSWRKVSLHSPAPSR 133
L + A A L P R C A L + S R+ LH R
Sbjct: 81 LGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGR 128
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 31.6 bits (70), Expect = 0.36
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 60 GTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAI--------ASGGLSPVERDCLA 111
G E E+ R+KT K+ +A SGS S + ++S + +S G S +
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 112 FLRQENKTSWRKVSLHSPAPSRR 134
+++S S SP+PSRR
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRR 129
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 31.6 bits (70), Expect = 0.36
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 60 GTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAI--------ASGGLSPVERDCLA 111
G E E+ R+KT K+ +A SGS S + ++S + +S G S +
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 112 FLRQENKTSWRKVSLHSPAPSRR 134
+++S S SP+PSRR
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRR 129
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 31.6 bits (70), Expect = 0.36
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 60 GTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAI--------ASGGLSPVERDCLA 111
G E E+ R+KT K+ +A SGS S + ++S + +S G S +
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 112 FLRQENKTSWRKVSLHSPAPSRR 134
+++S S SP+PSRR
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRR 129
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 31.6 bits (70), Expect = 0.36
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 60 GTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAI--------ASGGLSPVERDCLA 111
G E E+ R+KT K+ +A SGS S + ++S + +S G S +
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 112 FLRQENKTSWRKVSLHSPAPSRR 134
+++S S SP+PSRR
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRR 129
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 31.2 bits (69), Expect = 0.47
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 60 GTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAI--------ASGGLSPVERDCLA 111
G E E+ R+KT K+ +A SGS S + ++S + +S G S +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 112 FLRQENKTSWRKVSLHSPAPSRR 134
+++S S SP+PSRR
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRR 129
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 31.2 bits (69), Expect = 0.47
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 60 GTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAI--------ASGGLSPVERDCLA 111
G E E+ R+KT K+ +A SGS S + ++S + +S G S +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 112 FLRQENKTSWRKVSLHSPAPSRR 134
+++S S SP+PSRR
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRR 129
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 31.2 bits (69), Expect = 0.47
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 60 GTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAI--------ASGGLSPVERDCLA 111
G E E+ R+KT K+ +A SGS S + ++S + +S G S +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 112 FLRQENKTSWRKVSLHSPAPSRR 134
+++S S SP+PSRR
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRR 129
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 31.2 bits (69), Expect = 0.47
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 60 GTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAI--------ASGGLSPVERDCLA 111
G E E+ R+KT K+ +A SGS S + ++S + +S G S +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 112 FLRQENKTSWRKVSLHSPAPSRR 134
+++S S SP+PSRR
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRR 129
>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
Length = 492
Score = 30.8 bits (68), Expect = 0.62
Identities = 18/32 (56%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 35 GVGVGAGAGGCPLVALLGWHTGAAAGTATEEK 66
G G GAG GG PLVA GAA G T EK
Sbjct: 369 GAGGGAGGGGGPLVAAAA-AAGAAGGFLTAEK 399
>gi|169214821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 13 KPPWEVPS-ILATTVAREEMDR-RGVGVGAGAGGCPL 47
K PW PS L +T R E+ R RG G G G+GG L
Sbjct: 203 KTPWPFPSSCLPSTPLRSELRRQRGDGCGEGSGGISL 239
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 30.0 bits (66), Expect = 1.1
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 22 LATTVAREEMDR--RGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTSKKD 79
L T A+E+ D +G G G GAGG G GA E R R + + +
Sbjct: 36 LQPTSAKEDRDCDIKGGGGGGGAGGAE-----GGAGGAGRARERAESGRPCGRRRHPQAE 90
Query: 80 AAPSGSVSLCAAATSMAIASGGLSPVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAA 139
AP AAA + A+ +G + R E S R+ AP R PG +
Sbjct: 91 PAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERE---SERAPGRGPGARS 147
Query: 140 TA 141
+A
Sbjct: 148 SA 149
>gi|239754006 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 17 EVPSILATTVAREEMDRRGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTS 76
E P+ AR+ GV G GG V LLG GAA A ++R+ +
Sbjct: 101 EAPAAPKVAEARQGWGGSGVAPGGNRGGRGRVVLLGAQRGAAHELAVHAEQRA------A 154
Query: 77 KKDAAPSGSVSLCAAATSMAIASGGL 102
K A G + A + + GG+
Sbjct: 155 HKHVAEDGGENEEGAEARVHVGVGGV 180
>gi|169215021 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 13 KPPWEVPS-ILATTVAREEMDR-RGVGVGAGAGGCPL 47
K PW PS L +T R E+ R RG G G G+GG L
Sbjct: 203 KTPWPFPSSCLPSTPLRSELRRQRGDGCGEGSGGISL 239
>gi|169211729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 247
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 87 SLCAAATSMAIASGGLSPV-----------ERDCLAFLRQENKTSWRKVSLHSPAPSRRP 135
SLC S+ + G + + E+D L + ++ +WR + LH PS RP
Sbjct: 79 SLCPVPLSLCLGPVGCARIQTYQAQEVGRMEKD----LGRSSRNTWRTLCLHLGHPSLRP 134
Query: 136 GLAATASWVHS 146
GL A A S
Sbjct: 135 GLKAGAHHTRS 145
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 30.0 bits (66), Expect = 1.1
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 22 LATTVAREEMDR--RGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTSKKD 79
L T A+E+ D +G G G GAGG G GA E R R + + +
Sbjct: 36 LQPTSAKEDRDCDIKGGGGGGGAGGAE-----GGAGGAGRARERAESGRPCGRRRHPQAE 90
Query: 80 AAPSGSVSLCAAATSMAIASGGLSPVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAA 139
AP AAA + A+ +G + R E S R+ AP R PG +
Sbjct: 91 PAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERE---SERAPGRGPGARS 147
Query: 140 TA 141
+A
Sbjct: 148 SA 149
>gi|239748537 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 17 EVPSILATTVAREEMDRRGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTS 76
E P+ AR+ GV G GG V LLG GAA A ++R+ +
Sbjct: 101 EAPAAPKVAEARQGWGGSGVAPGGNRGGRGRVVLLGAQRGAAHELAVHAEQRA------A 154
Query: 77 KKDAAPSGSVSLCAAATSMAIASGGL 102
K A G + A + + GG+
Sbjct: 155 HKHVAEDGGENEEGAEARVHVGVGGV 180
>gi|169214546 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 13 KPPWEVPS-ILATTVAREEMDR-RGVGVGAGAGGCPL 47
K PW PS L +T R E+ R RG G G G+GG L
Sbjct: 203 KTPWPFPSSCLPSTPLRSELRRQRGDGCGEGSGGISL 239
>gi|169210847 PREDICTED: similar to hCG2040688 [Homo sapiens]
Length = 247
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 87 SLCAAATSMAIASGGLSPV-----------ERDCLAFLRQENKTSWRKVSLHSPAPSRRP 135
SLC S+ + G + + E+D L + ++ +WR + LH PS RP
Sbjct: 79 SLCPVPLSLCLGPVGCARIQTYQAQEVGRMEKD----LGRSSRNTWRTLCLHLGHPSLRP 134
Query: 136 GLAATASWVHS 146
GL A A S
Sbjct: 135 GLKAGAHHTRS 145
>gi|239742520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 17 EVPSILATTVAREEMDRRGVGVGAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTS 76
E P+ AR+ GV G GG V LLG GAA A ++R+ +
Sbjct: 101 EAPAAPKVAEARQGWGGSGVAPGGNRGGRGRVVLLGAQRGAAHELAVHAEQRA------A 154
Query: 77 KKDAAPSGSVSLCAAATSMAIASGGL 102
K A G + A + + GG+
Sbjct: 155 HKHVAEDGGENEEGAEARVHVGVGGV 180
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 44 GCPLVALLGWHTGAAAGTATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAIASGGLS 103
G P AL +H A + E L +K S A P G++ L AAA +G
Sbjct: 807 GAPAPALADYHECTACRVSFHSLEAYLAHKKYSCPAAPPPGALGLPAAACPYCPPNG--- 863
Query: 104 PVERDCLAFLR 114
PV D L R
Sbjct: 864 PVRGDLLEHFR 874
>gi|212274327 transmembrane protein 151B [Homo sapiens]
Length = 566
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 31 MDRRGVGV---GAGAGGCPLVALLGWHTGAAAGTATEEKERSLCREKTSKKDAAPSGSVS 87
MD G+G GAG G P G AAG A + C+ S ++S
Sbjct: 393 MDLAGLGTRCGGAGGGYAPSCRYGGVGGPGAAGVAPYRRSCEHCQRAVSSSSIFSRSALS 452
Query: 88 LCAAATSMAIASGG 101
+CA+ + GG
Sbjct: 453 ICASPRAGPGPGGG 466
>gi|122937259 solute carrier family 45, member 4 [Homo sapiens]
Length = 798
Score = 29.3 bits (64), Expect = 1.8
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 61 TATEEKERSLCREKTSKKDAAPSGSVSLCAAATSMAIASGGLSPVERDCLAFLRQENKTS 120
T+ E + L R T K+AA L + +G SP + + R + K S
Sbjct: 296 TSQELAKTKLPRLATFLKEAAKEDETLLDNHLNEAKVPNGSGSPTKDALGGYTRVDTKPS 355
Query: 121 WRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRARVSAAQNL--PGRS 166
S+ + R ++T S+ + CYR R + A L P RS
Sbjct: 356 ATSSSMRRRRHAFRRQASSTFSYYGKLGSHCYRYRRANAVVLIKPSRS 403
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.127 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,477,975
Number of Sequences: 37866
Number of extensions: 340531
Number of successful extensions: 1418
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 54
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.