Guide to the Human Genome
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Name: LOC100291759 Sequence: fasta or formatted (174aa) NCBI GI: 239756148
Description:

PREDICTED: hypothetical protein XP_002344839

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.1         28           3
 C cysteine            3.4          6           1
 D aspartate           1.7          3           1
 E glutamate           5.2          9           2
 F phenylalanine       1.7          3           1
 G glycine             8.0         14           2
 H histidine           2.3          4           1
 I isoleucine          1.7          3           1
 K lysine              4.6          8           2
 L leucine             7.5         13           2
 M methionine          2.3          4           1
 N asparagine          1.1          2           1
 P proline             7.5         13           2
 Q glutamine           1.1          2           1
 R arginine            8.0         14           2
 S serine              9.8         17           1
 T threonine           6.9         12           2
 V valine              8.0         14           1
 W tryptophan          2.3          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344839 
LOC100287861          0.402   PREDICTED: hypothetical protein 
LOC100287861          0.402   PREDICTED: hypothetical protein XP_002343328 
TNRC18                0.024   trinucleotide repeat containing 18 
LOC100128014          0.024   PREDICTED: similar to hCG2040688 
LOC100292591          0.021   PREDICTED: hypothetical protein 
LOC100287994          0.021   PREDICTED: hypothetical protein 
LOC100287994          0.021   PREDICTED: hypothetical protein XP_002342988 
LOC643446             0.021   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.021   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.021   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.021   PREDICTED: similar to ribonucleic acid binding prote...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
RNPS1                 0.018   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.018   RNA-binding protein S1, serine-rich domain 
NOVA2                 0.018   neuro-oncological ventral antigen 2 
LOC100128997          0.015   PREDICTED: hypothetical protein 
LOC100131851          0.015   PREDICTED: hypothetical protein 
LOC100127944          0.015   PREDICTED: hypothetical protein 
LOC100128997          0.015   PREDICTED: hypothetical protein 
LOC100128014          0.015   PREDICTED: hypothetical protein 
LOC100130751          0.015   PREDICTED: hypothetical protein 
LOC100127944          0.015   PREDICTED: hypothetical protein 
LOC100128997          0.015   PREDICTED: hypothetical protein 
LOC100128014          0.015   PREDICTED: similar to hCG2040688 
LOC100127944          0.015   PREDICTED: hypothetical protein 
ZFPM1                 0.015   zinc finger protein, multitype 1 
TMEM151B              0.012   transmembrane protein 151B 
SLC45A4               0.012   solute carrier family 45, member 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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