Guide to the Human Genome
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Name: LOC100128014 Sequence: fasta or formatted (247aa) NCBI GI: 169210847
Description:

PREDICTED: similar to hCG2040688

Not currently referenced in the text

Other entries for this name:
alt mRNA {247aa} PREDICTED: hypothetical protein
alt prot {247aa} PREDICTED: similar to hCG2040688
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         19           2
 C cysteine            5.7         14           2
 D aspartate           4.0         10           2
 E glutamate           3.2          8           1
 F phenylalanine       3.2          8           1
 G glycine             8.5         21           3
 H histidine           2.8          7           2
 I isoleucine          4.0         10           3
 K lysine              3.2          8           3
 L leucine            10.5         26           2
 M methionine          1.2          3           1
 N asparagine          2.8          7           1
 P proline             6.1         15           1
 Q glutamine           3.6          9           1
 R arginine            8.5         21           2
 S serine             10.9         27           2
 T threonine           6.1         15           1
 V valine              2.8          7           1
 W tryptophan          2.4          6           1
 Y tyrosine            2.4          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040688 
LOC100128014          1.000   PREDICTED: hypothetical protein 
LOC100128014          0.996   PREDICTED: similar to hCG2040688 
LOC100292754          0.018   PREDICTED: hypothetical protein 
LOC100290764          0.018   PREDICTED: hypothetical protein XP_002346421 
LOC100287607          0.018   PREDICTED: hypothetical protein XP_002342119 
MAST2                 0.016   microtubule associated serine/threonine kinase 2 [H...
LOC100131416          0.014   PREDICTED: hypothetical protein 
LOC100131416          0.014   PREDICTED: hypothetical protein 
SH3RF3                0.014   SH3 domain containing ring finger 3 
LOC100291759          0.010   PREDICTED: hypothetical protein XP_002344839 
LOC100287861          0.010   PREDICTED: hypothetical protein 
LOC100287861          0.010   PREDICTED: hypothetical protein XP_002343328 
C16orf11              0.010   hypothetical protein LOC146325 
LOC644794             0.008   PREDICTED: hypothetical protein 
LOC100291868          0.008   PREDICTED: hypothetical protein XP_002345322 
LOC644794             0.008   PREDICTED: hypothetical protein 
LOC100290196          0.008   PREDICTED: hypothetical protein XP_002347647 
LOC644794             0.008   PREDICTED: hypothetical protein 
LOC100289429          0.008   PREDICTED: hypothetical protein XP_002342197 
LOC644794             0.008   PREDICTED: hypothetical protein 
TXLNA                 0.008   taxilin 
CAMK1G                0.008   calcium/calmodulin-dependent protein kinase IG [Homo...
DCAF13                0.008   WD repeats and SOF1 domain containing 
ANKRD11               0.008   ankyrin repeat domain 11 
EMID2                 0.008   EMI domain containing 2 
C6orf174              0.006   hypothetical protein LOC387104 
FUT3                  0.006   fucosyltransferase 3 
FUT3                  0.006   fucosyltransferase 3 
FUT3                  0.006   fucosyltransferase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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