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Search of human proteins with 239756033
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756033 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756033 PREDICTED: hypothetical protein LOC283486 [Homo sap... 271 1e-73
gi|239750579 PREDICTED: hypothetical protein LOC283486 [Homo sap... 269 3e-73
gi|239744878 PREDICTED: hypothetical protein LOC283486 [Homo sap... 269 3e-73
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|239747201 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 32 0.12
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 30 0.35
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 30 0.35
gi|229577391 pyridine nucleotide-disulphide oxidoreductase domai... 30 0.46
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 30 0.46
gi|239757609 PREDICTED: hypothetical protein [Homo sapiens] 30 0.60
gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo ... 30 0.60
gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo ... 30 0.60
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 30 0.60
gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo ... 29 0.79
gi|7705708 hypothetical protein LOC51066 [Homo sapiens] 29 0.79
gi|31317307 proprotein convertase subtilisin/kexin type 9 prepro... 29 1.0
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ... 29 1.0
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 29 1.0
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ... 29 1.0
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 29 1.0
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 29 1.0
gi|153792074 proline rich 12 [Homo sapiens] 29 1.0
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 28 1.3
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 28 1.3
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 28 1.3
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 28 1.3
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 28 1.3
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 28 2.3
>gi|239756033 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 271 bits (692), Expect = 1e-73
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAG 60
MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAG
Sbjct: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAG 60
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC
Sbjct: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
Query: 121 GHG 123
GHG
Sbjct: 121 GHG 123
>gi|239750579 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 269 bits (688), Expect = 3e-73
Identities = 122/123 (99%), Positives = 122/123 (99%)
Query: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAG 60
MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRW SLGFAEGPGTHTAG
Sbjct: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG 60
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC
Sbjct: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
Query: 121 GHG 123
GHG
Sbjct: 121 GHG 123
>gi|239744878 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 269 bits (688), Expect = 3e-73
Identities = 122/123 (99%), Positives = 122/123 (99%)
Query: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAG 60
MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRW SLGFAEGPGTHTAG
Sbjct: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG 60
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC
Sbjct: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
Query: 121 GHG 123
GHG
Sbjct: 121 GHG 123
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 32.0 bits (71), Expect = 0.12
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 12 GPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEG--RARG 69
GP P P Q + E GL + S CV+ LG A+ PG L G RARG
Sbjct: 370 GPQPLP--QVSKEGSGLARPDPSCCVR-------AGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 70 V-------SARSWHCHACSGP 83
+ +R ACSGP
Sbjct: 421 LQLRPVGGQSRREAAPACSGP 441
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 32.0 bits (71), Expect = 0.12
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 12 GPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEG--RARG 69
GP P P Q + E GL + S CV+ LG A+ PG L G RARG
Sbjct: 370 GPQPLP--QVSKEGSGLARPDPSCCVR-------AGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 70 V-------SARSWHCHACSGP 83
+ +R ACSGP
Sbjct: 421 LQLRPVGGQSRREAAPACSGP 441
>gi|239747201 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 32.0 bits (71), Expect = 0.12
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 7 RCLRAGP-APAPAWQKAPES----RGLCPEEVSSCVKGPGRGRWVSLGFAEGPG-THTAG 60
RC AG A A + +K P + P +SSC+ GP G E P THT+
Sbjct: 31 RCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGP-------TGSLEPPSVTHTST 83
Query: 61 LAVEGRARGVSARS 74
L GRA SA S
Sbjct: 84 LGTPGRAPDASANS 97
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 32.0 bits (71), Expect = 0.12
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 12 GPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEG--RARG 69
GP P P Q + E GL + S CV+ LG A+ PG L G RARG
Sbjct: 370 GPQPLP--QVSKEGSGLARPDPSCCVR-------AGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 70 V-------SARSWHCHACSGP 83
+ +R ACSGP
Sbjct: 421 LQLRPVGGQSRREAAPACSGP 441
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 30.4 bits (67), Expect = 0.35
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 11 AGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGV 70
AGPAP A S S + G + G GPG+ +AG G G
Sbjct: 106 AGPAPVAFSSSAATSSSTSTPTSSCSMTAADFGGGAAAGAVGGPGSRSAG-GAGGTGTGS 164
Query: 71 SARSWHCHACSGPGTRECVGQAVGRQGAR 99
A C C G R GR+G R
Sbjct: 165 GASCCPCCCCCGCPDRP------GRRGRR 187
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 30.4 bits (67), Expect = 0.35
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 13 PAPAPAW---QKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARG 69
PA + AW +A + G + PGRGR + + PGT A RA G
Sbjct: 78 PARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGG 137
Query: 70 VSARSWHCHACSGPGTR---ECVGQAVGRQGARLRPWLQPTWASIPSS 114
+A S S P R C G ++G LR +P A++P S
Sbjct: 138 ATAAS-SAGTRSVPARRLPPPCGGTSLGAGSRALR---RPGSAALPRS 181
>gi|229577391 pyridine nucleotide-disulphide oxidoreductase domain
2 [Homo sapiens]
Length = 581
Score = 30.0 bits (66), Expect = 0.46
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 6 GRCLRAGPAPAPAWQKA-PESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTA 59
G C +P PAW++ E+RG E + V G G V+ + + G +TA
Sbjct: 7 GLCKAVAASPFPAWRRDNTEARGGLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTA 61
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 30.0 bits (66), Expect = 0.46
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 2 PVCGGRCLRAGP----APAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTH 57
P G RAGP +P +APE+ PEE + G S A PG
Sbjct: 342 PTGDGALTRAGPWGRGLTSPG--EAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGAE 399
Query: 58 TAGLAVEGRARGVS 71
AG + EG A S
Sbjct: 400 GAGSSAEGTAAAPS 413
>gi|239757609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 571
Score = 29.6 bits (65), Expect = 0.60
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 2 PVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKG-PGRGRWVSLGFAEGPGTHTAG 60
P RCL G AP+ +AP L + + S V G P SLG +G AG
Sbjct: 258 PQAHARCLETGGKGAPSLPRAPLPSTLACQHLHSFVHGFPMLVLQASLGQVDG---EHAG 314
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARL-RPWLQPTWASIPSSTALE 118
E + + C A +G G E G+ GR G+ + W PS T ++
Sbjct: 315 HPHEPCYTSID--EFGCDARTGGGQGEERGRGRGRLGSGCSQEWAGAQTVGNPSPTGVQ 371
>gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo
sapiens]
Length = 571
Score = 29.6 bits (65), Expect = 0.60
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 2 PVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKG-PGRGRWVSLGFAEGPGTHTAG 60
P RCL G AP+ +AP L + + S V G P SLG +G AG
Sbjct: 258 PQAHARCLETGGKGAPSLPRAPLPSTLACQHLHSFVHGFPMLVLQASLGQVDG---EHAG 314
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARL-RPWLQPTWASIPSSTALE 118
E + + C A +G G E G+ GR G+ + W PS T ++
Sbjct: 315 HPHEPCYTSID--EFGCDARTGGGQGEERGRGRGRLGSGCSQEWAGAQTVGNPSPTGVQ 371
>gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo
sapiens]
Length = 571
Score = 29.6 bits (65), Expect = 0.60
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 2 PVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKG-PGRGRWVSLGFAEGPGTHTAG 60
P RCL G AP+ +AP L + + S V G P SLG +G AG
Sbjct: 258 PQAHARCLETGGKGAPSLPRAPLPSTLACQHLHSFVHGFPMLVLQASLGQVDG---EHAG 314
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARL-RPWLQPTWASIPSSTALE 118
E + + C A +G G E G+ GR G+ + W PS T ++
Sbjct: 315 HPHEPCYTSID--EFGCDARTGGGQGEERGRGRGRLGSGCSQEWAGAQTVGNPSPTGVQ 371
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 29.6 bits (65), Expect = 0.60
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 5 GGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGR---GRWVSLGFAEGPGTHTAGL 61
G R L P+ P +K P +SS G G G+W S F EG G
Sbjct: 2022 GPRPLLELPSHPPQHRKDRWEEAGPPSALSSSAPGQGPEADGQWASADFREGKGHEYRNQ 2081
Query: 62 AVEGRAR 68
EGR R
Sbjct: 2082 TFEGRQR 2088
>gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo
sapiens]
Length = 262
Score = 29.3 bits (64), Expect = 0.79
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 15 PAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARS 74
PA + P+ G+C E ++ ++ PGRG G A T G A ++ARS
Sbjct: 8 PARSANPRPQFPGVCGREHAATLRAPGRG-----GGASPAQIGTRGRGGHNFAPNLTARS 62
Query: 75 WHCHACSGPGTRECVG 90
GP VG
Sbjct: 63 AVTSGLGGPPAAVMVG 78
>gi|7705708 hypothetical protein LOC51066 [Homo sapiens]
Length = 353
Score = 29.3 bits (64), Expect = 0.79
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 33 VSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSGPGTREC 88
V C K GRGR+ G G GT + + +R C C+G G R C
Sbjct: 152 VKECHKCHGRGRYKCSG-CHGAGTVRCPSCCGAKRKAKQSR--RCQLCAGSGRRRC 204
>gi|31317307 proprotein convertase subtilisin/kexin type 9
preproprotein [Homo sapiens]
Length = 692
Score = 28.9 bits (63), Expect = 1.0
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 55 GTHTAGLAVEGR----ARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQP 106
GTH AG+ V GR A+G S RS C G GT G +G + R +QP
Sbjct: 227 GTHLAGV-VSGRDAGVAKGASMRSLRVLNCQGKGT--VSGTLIGLEFIRKSQLVQP 279
>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
sapiens]
Length = 333
Score = 28.9 bits (63), Expect = 1.0
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 21/78 (26%)
Query: 5 GGRCLRAGP-------------APAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFA 51
G R + AGP AP WQ+A RG P +GP RG V
Sbjct: 188 GERNVPAGPGGSAAANDLRRSRVSAPVWQRA---RGRGPRRARRSGRGPRRGPEVWPRSE 244
Query: 52 EGPGTHTAGLA-VEGRAR 68
EGPG GLA V G AR
Sbjct: 245 EGPG----GLAEVRGGAR 258
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 28.9 bits (63), Expect = 1.0
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 18 AWQKAPESRGLCPE-EVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWH 76
A Q+ E+ GL E + ++G G LG A GP G GR RG R
Sbjct: 419 ALQQILEAVGLAGGIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGR--- 475
Query: 77 CHACSGPGTRECVGQA---VGRQGARLR 101
+G R QA GR ARLR
Sbjct: 476 ---VAGASGRRGASQARGGTGRAPARLR 500
>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
Length = 296
Score = 28.9 bits (63), Expect = 1.0
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 21/78 (26%)
Query: 5 GGRCLRAGP-------------APAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFA 51
G R + AGP AP WQ+A RG P +GP RG V
Sbjct: 151 GERNVPAGPGGSAAANDLRRSRVSAPVWQRA---RGRGPRRARRSGRGPRRGPEVWPRSE 207
Query: 52 EGPGTHTAGLA-VEGRAR 68
EGPG GLA V G AR
Sbjct: 208 EGPG----GLAEVRGGAR 221
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 28.9 bits (63), Expect = 1.0
Identities = 18/63 (28%), Positives = 23/63 (36%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 28.9 bits (63), Expect = 1.0
Identities = 18/63 (28%), Positives = 23/63 (36%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 28.9 bits (63), Expect = 1.0
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 6 GRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRW----VSLGFAEGPGTHTAGL 61
G +AGP+ A A R PE G G G + S G+ G G + G
Sbjct: 344 GEPSKAGPSGATA---GASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGY--GA 398
Query: 62 AVEGRARGVSARSW---HCHACSGPGTRECVGQAVGRQGA 98
A G R RS C + GP G+A G GA
Sbjct: 399 AAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGA 438
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 23/63 (36%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 23/63 (36%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 23/63 (36%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 23/63 (36%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 23/63 (36%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
Length = 2355
Score = 27.7 bits (60), Expect = 2.3
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 5 GGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAGLA-V 63
GG+ + G W++ E+ G E V C+ G G+G W AE H AG + V
Sbjct: 144 GGQSYKIGDT----WRRPHETGGYMLECV--CL-GNGKGEWTCKPIAEKCFDHAAGTSYV 196
Query: 64 EGRARGVSARSWHCHACSGPGTRECVGQAVGR 95
G + W C+ C+G+ GR
Sbjct: 197 VGETWEKPYQGWMMVDCT------CLGEGSGR 222
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,817,001
Number of Sequences: 37866
Number of extensions: 365328
Number of successful extensions: 1382
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 131
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.