Guide to the Human Genome
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Search of human proteins with 239756030

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756030 PREDICTED: hypothetical protein [Homo sapiens]
         (159 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756030 PREDICTED: hypothetical protein [Homo sapiens]           355   7e-99
gi|239750584 PREDICTED: hypothetical protein [Homo sapiens]           355   7e-99
gi|239744881 PREDICTED: hypothetical protein XP_002344129 [Homo ...   354   2e-98
gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo ...    33   0.13 
gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo ...    33   0.13 
gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo ...    33   0.13 
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo...    32   0.18 
gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]            32   0.30 
gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo ...    32   0.30 
gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo ...    32   0.30 
gi|31881785 Hermansky-Pudlak syndrome-6 [Homo sapiens]                 32   0.30 
gi|122937309 leucine rich repeat containing 4B [Homo sapiens]          32   0.30 
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]                   31   0.39 
gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]      31   0.51 
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    30   0.67 
gi|154759249 keratin associated protein 10-11 [Homo sapiens]           30   1.1  
gi|239756535 PREDICTED: hypothetical protein [Homo sapiens]            29   1.5  
gi|239751051 PREDICTED: hypothetical protein [Homo sapiens]            29   1.5  
gi|239745492 PREDICTED: hypothetical protein XP_002343473 [Homo ...    29   1.5  
gi|224548950 hypothetical protein LOC644844 [Homo sapiens]             29   1.5  
gi|150170725 zinc and ring finger 4 [Homo sapiens]                     29   1.9  
gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]    29   1.9  
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof...    28   2.5  
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap...    28   2.5  
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    28   2.5  
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [...    28   2.5  
gi|94536830 DMRT-like family C2 [Homo sapiens]                         28   2.5  
gi|28557723 hypothetical protein LOC283416 [Homo sapiens]              28   2.5  
gi|157674356 nexin-related serine protease inhibitor [Homo sapiens]    28   3.3  
gi|148833508 notch1 preproprotein [Homo sapiens]                       28   4.3  

>gi|239756030 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 159

 Score =  355 bits (912), Expect = 7e-99
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
           MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI
Sbjct: 1   MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60

Query: 61  KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
           KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC
Sbjct: 61  KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120

Query: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
           AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL
Sbjct: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159


>gi|239750584 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 159

 Score =  355 bits (912), Expect = 7e-99
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
           MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI
Sbjct: 1   MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60

Query: 61  KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
           KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC
Sbjct: 61  KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120

Query: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
           AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL
Sbjct: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159


>gi|239744881 PREDICTED: hypothetical protein XP_002344129 [Homo
           sapiens]
          Length = 159

 Score =  354 bits (908), Expect = 2e-98
 Identities = 158/159 (99%), Positives = 159/159 (100%)

Query: 1   MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
           MSGWKVCTGCGRSSQEGQGTCWPH+FMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI
Sbjct: 1   MSGWKVCTGCGRSSQEGQGTCWPHRFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60

Query: 61  KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
           KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC
Sbjct: 61  KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120

Query: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
           AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL
Sbjct: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159


>gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo
           sapiens]
          Length = 212

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 47  PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94
           PPS+ C C LL   KLP CW        RP    +  P   +A  G G
Sbjct: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201


>gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo
           sapiens]
          Length = 212

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 47  PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94
           PPS+ C C LL   KLP CW        RP    +  P   +A  G G
Sbjct: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201


>gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo
           sapiens]
          Length = 212

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 47  PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94
           PPS+ C C LL   KLP CW        RP    +  P   +A  G G
Sbjct: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201


>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
           sapiens]
          Length = 1242

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 6   VCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLW 59
           V T C  S + G G+    +  G    G P     GS PL PPS + GC  L W
Sbjct: 666 VLTHCSASPEPGPGSTGSSESPGSQGPGSPE----GSAPLEPPSQQ-GCRSLAW 714


>gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 545

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 63  PGCWPHWTGVAVRPCLGAWL---PPEVRAAQGGVGPGEGSGG 101
           PGC P  +     P L  WL    P+ R  +G  GPG G GG
Sbjct: 458 PGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGG 499


>gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo
           sapiens]
          Length = 291

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 63  PGCWPHWTGVAVRPCLGAWL---PPEVRAAQGGVGPGEGSGG 101
           PGC P  +     P L  WL    P+ R  +G  GPG G GG
Sbjct: 204 PGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGG 245


>gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo
           sapiens]
          Length = 291

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 63  PGCWPHWTGVAVRPCLGAWL---PPEVRAAQGGVGPGEGSGG 101
           PGC P  +     P L  WL    P+ R  +G  GPG G GG
Sbjct: 204 PGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGG 245


>gi|31881785 Hermansky-Pudlak syndrome-6 [Homo sapiens]
          Length = 775

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 24/93 (25%)

Query: 9   GCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPH 68
           G G+   +     W     G TA  +PP        LPP    C C+  L  +       
Sbjct: 531 GNGKLRSQAPPDVWKKVLGGITAGKEPPNGI-----LPPFELLCQCLCQLEPR------- 578

Query: 69  WTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGG 101
                       WLPP V  AQ   GPG G+GG
Sbjct: 579 ------------WLPPFVELAQQQGGPGWGAGG 599


>gi|122937309 leucine rich repeat containing 4B [Homo sapiens]
          Length = 713

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 44 PLPPP--SWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPP 84
          PLPP   SW  G +L LW+  P       GVAV    G   PP
Sbjct: 11 PLPPGRMSWPHGALLFLWLFSPPLGAGGGGVAVTSAAGGGSPP 53


>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
          Length = 398

 Score = 31.2 bits (69), Expect = 0.39
 Identities = 15/44 (34%), Positives = 17/44 (38%)

Query: 7   CTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSW 50
           CTG  R+    QG  W      DT    PP       PLP  +W
Sbjct: 325 CTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAW 368


>gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]
          Length = 2539

 Score = 30.8 bits (68), Expect = 0.51
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 118 CSCAFPSAWQIMQDCEPQLRARQGEAP 144
           C C     W++ Q C PQL+  QG+ P
Sbjct: 21  CECLRRGEWELAQACVPQLQEGQGDIP 47


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 30.4 bits (67), Expect = 0.67
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 33  GQPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQG- 91
           G PP S  G  P PPP+     V       P   P  +GV   P      PP   A  G 
Sbjct: 140 GAPPGSGPGPTPTPPPA-----VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGP 194

Query: 92  GVGPGEGSG 100
           G GP +G G
Sbjct: 195 GPGPKQGPG 203


>gi|154759249 keratin associated protein 10-11 [Homo sapiens]
          Length = 298

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 34  QPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRP-CLGAWLPP--EVRAAQ 90
           +PPCSA  SC  P PS    C  +  +  P C       A +  C  +  P   +  + Q
Sbjct: 28  EPPCSA-PSCCAPAPSLSLVCTPVSCVSSPCCQAACEPSACQSGCTSSCTPSCCQQSSCQ 86

Query: 91  GGVGPGEGSGGSCLQQICFSSLQVKVVC----SCAFPSAWQIMQDCEPQLRARQGEAPLV 146
                      +C   +C  ++  K VC     C   S+      C+P   A     P  
Sbjct: 87  PACCTSSPCQQACCVPVCCKTVCCKPVCCVPVCCGAASSCCRQSSCQPACCASSSCQPAC 146

Query: 147 SMP 149
            +P
Sbjct: 147 CVP 149


>gi|239756535 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 65  CWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGG 101
           C P W+G +     G  + P       GVGPG G GG
Sbjct: 14  CSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG 50


>gi|239751051 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 65  CWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGG 101
           C P W+G +     G  + P       GVGPG G GG
Sbjct: 14  CSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG 50


>gi|239745492 PREDICTED: hypothetical protein XP_002343473 [Homo
           sapiens]
          Length = 90

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 65  CWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGG 101
           C P W+G +     G  + P       GVGPG G GG
Sbjct: 14  CSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG 50


>gi|224548950 hypothetical protein LOC644844 [Homo sapiens]
          Length = 82

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 14/38 (36%), Positives = 14/38 (36%)

Query: 10 CGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPP 47
          CG     G G C P    G    G PP    G C  PP
Sbjct: 21 CGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP 58



 Score = 29.3 bits (64), Expect = 1.5
 Identities = 14/38 (36%), Positives = 14/38 (36%)

Query: 10 CGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPP 47
          CG     G G C P    G    G PP    G C  PP
Sbjct: 32 CGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPP 69


>gi|150170725 zinc and ring finger 4 [Homo sapiens]
          Length = 429

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 11/54 (20%)

Query: 35  PPCSAVGSCPLPPPSWECGCVLL-----------LWIKLPGCWPHWTGVAVRPC 77
           PPC  +G  P+   SW  GC L            LW+    C  H   V    C
Sbjct: 241 PPCHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTC 294


>gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]
          Length = 1585

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 4   WKVCT-GCGRSSQEGQGTCWPHQFMGDTALG---QPPCSAVGSCPL 45
           W +C+  CGR S+    TC P Q  G    G   Q    ++ +CP+
Sbjct: 373 WSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPV 418


>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
           a [Homo sapiens]
          Length = 578

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 79  GAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSCA-FPSAWQIMQDCEPQLR 137
           GA   P  R+A G  G G GSG SC    C         C C   P      + C P  R
Sbjct: 144 GAVGGPGSRSAGGAGGTGTGSGASCCPCCC--------CCGCPDRPGRRGRRRGCAPSPR 195

Query: 138 ARQG 141
            R G
Sbjct: 196 CRWG 199


>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
           sapiens]
          Length = 328

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 33  GQPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGG 92
           G P   A+G+ P P P            K+PG +      +  PCL   L    RA   G
Sbjct: 56  GPPHTPALGATPSPDPQQGSP---ERPFKVPGVF------STLPCLSTALT--FRAGGRG 104

Query: 93  VGPGEGSGGSCLQQICFSSL 112
            G GEG GG  L  + F +L
Sbjct: 105 RGGGEGGGGERLLFLLFRAL 124


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
           sapiens]
          Length = 1751

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 32  LGQPPCSAVGSC-PLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAW 81
           LG  P +  G C PLPP    CG + +    LP    H +G  VR    AW
Sbjct: 323 LGADPEAPAGRCLPLPPSLPVCGHLGISRFWLPNHLHHESGEQVRAGARAW 373


>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor
           [Homo sapiens]
          Length = 1584

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 2   SGWKVCTG-CGRSSQEGQGTCWPHQFMGDTALG---QPPCSAVGSCP 44
           S W +C+  CGR  ++   TC P QF G+   G   Q     +  CP
Sbjct: 416 SPWSLCSSTCGRGFRDRTRTCRPPQFGGNPCEGPEKQTKFCNIALCP 462


>gi|94536830 DMRT-like family C2 [Homo sapiens]
          Length = 367

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 34  QPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWP-HWTGVAVRPCL-GAWLPP 84
           Q P  AV   P PP    CG +LL     P   P  WT V   P + G WLPP
Sbjct: 134 QTPHGAVLLAPTPPGKNSCGPLLL--SHPPEASPLSWTPVPPGPWVPGHWLPP 184


>gi|28557723 hypothetical protein LOC283416 [Homo sapiens]
          Length = 131

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 44  PLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSC 103
           P P P W  GC     ++ PG  P     AV P  G    P +     G  P E + GS 
Sbjct: 44  PAPSPRWGLGCGR---VRYPGPHPR---RAVEPAAGPLSAPII----AGGHPAEAAAGSA 93

Query: 104 LQQ 106
            QQ
Sbjct: 94  KQQ 96


>gi|157674356 nexin-related serine protease inhibitor [Homo sapiens]
          Length = 424

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 92  GVGPGEGSGGSCLQQICFSSLQVKVVCSCAFPSAWQ 127
           G GP EG GG   +Q+  +  Q+ +V + +F   W+
Sbjct: 164 GGGPSEGPGGWPWEQVSAAFAQLVLVSTMSFQGTWR 199


>gi|148833508 notch1 preproprotein [Homo sapiens]
          Length = 2555

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 29/98 (29%)

Query: 36  PCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGP 95
           PC   G+C      ++C C+L            +TG      L    P   R        
Sbjct: 799 PCLNQGTCIDDVAGYKCNCLL-----------PYTGATCEVVLAPCAPSPCR-------- 839

Query: 96  GEGSGGSCLQQICFSSLQVKVVCSCAFPSAWQIMQDCE 133
              +GG C Q   + S       SC  P+ WQ  Q CE
Sbjct: 840 ---NGGECRQSEDYESF------SCVCPTGWQ-GQTCE 867


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,560,186
Number of Sequences: 37866
Number of extensions: 454021
Number of successful extensions: 1542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 101
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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