Guide to the Human Genome
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Name: LOC100293788 Sequence: fasta or formatted (159aa) NCBI GI: 239756030
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         10           2
 C cysteine            8.8         14           1
 D aspartate           1.3          2           1
 E glutamate           3.8          6           1
 F phenylalanine       1.9          3           1
 G glycine            12.6         20           2
 H histidine           1.3          2           1
 I isoleucine          1.9          3           1
 K lysine              2.5          4           1
 L leucine            10.7         17           3
 M methionine          2.5          4           1
 N asparagine          0.0          0           0
 P proline            11.3         18           3
 Q glutamine           8.2         13           2
 R arginine            4.4          7           1
 S serine              8.2         13           2
 T threonine           2.5          4           1
 V valine              6.9         11           2
 W tryptophan          5.0          8           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287321          1.000   PREDICTED: hypothetical protein 
LOC100287321          0.997   PREDICTED: hypothetical protein XP_002344129 
LOC100291657          0.024   PREDICTED: hypothetical protein XP_002346151 
LOC100289805          0.024   PREDICTED: hypothetical protein XP_002347040 
LOC100287313          0.024   PREDICTED: hypothetical protein XP_002342892 
VWA5B2                0.021   von Willebrand factor A domain containing 5B2 [Homo...
LOC100293892          0.021   PREDICTED: hypothetical protein 
LOC100289756          0.021   PREDICTED: hypothetical protein XP_002348004 
LOC100286981          0.021   PREDICTED: hypothetical protein XP_002343724 
HPS6                  0.021   Hermansky-Pudlak syndrome-6 
LRRC4B                0.021   leucine rich repeat containing 4B 
PAX8                  0.018   paired box 8 isoform PAX8C 
ZFYVE26               0.018   zinc finger, FYVE domain containing 26 
SFPQ                  0.015   splicing factor proline/glutamine rich (polypyrimidin...
KRTAP10-11            0.015   keratin associated protein 10-11 
LOC100292859          0.012   PREDICTED: hypothetical protein 
LOC100289031          0.012   PREDICTED: hypothetical protein 
LOC100289031          0.012   PREDICTED: hypothetical protein XP_002343473 
LOC644844             0.012   hypothetical protein LOC644844 
ZNRF4                 0.012   zinc and ring finger 4 
BAI2                  0.012   brain-specific angiogenesis inhibitor 2 
CECR6                 0.009   cat eye syndrome chromosome region, candidate 6 isof...
LOC644246             0.009   PREDICTED: hypothetical protein LOC644246 
COL18A1               0.009   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
BAI1                  0.009   brain-specific angiogenesis inhibitor 1 precursor [...
DMRTC2                0.009   DMRT-like family C2 
C12orf61              0.009   hypothetical protein LOC283416 
SERPINE3              0.009   nexin-related serine protease inhibitor 
NOTCH1                0.009   notch1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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