Guide to the Human Genome
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Name: LOC100289805 Sequence: fasta or formatted (212aa) NCBI GI: 239749421
Description:

PREDICTED: hypothetical protein XP_002347040

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8          6           1
 C cysteine            5.7         12           3
 D aspartate           4.2          9           2
 E glutamate           2.8          6           1
 F phenylalanine       3.8          8           1
 G glycine             6.6         14           3
 H histidine           4.7         10           1
 I isoleucine          2.8          6           1
 K lysine              6.1         13           2
 L leucine             9.0         19           2
 M methionine          1.4          3           1
 N asparagine          2.4          5           1
 P proline            10.4         22           2
 Q glutamine           3.8          8           1
 R arginine            6.1         13           2
 S serine             10.4         22           2
 T threonine           7.1         15           1
 V valine              6.1         13           1
 W tryptophan          2.8          6           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347040 
LOC100291657          1.000   PREDICTED: hypothetical protein XP_002346151 
LOC100287313          1.000   PREDICTED: hypothetical protein XP_002342892 
LOC100293788          0.018   PREDICTED: hypothetical protein 
LOC100287321          0.018   PREDICTED: hypothetical protein 
LOC100287321          0.018   PREDICTED: hypothetical protein XP_002344129 
YLPM1                 0.014   YLP motif containing 1 
GFI1                  0.014   growth factor independent 1 
GFI1                  0.014   growth factor independent 1 
GFI1                  0.014   growth factor independent 1 
PER2                  0.011   period 2 
TRAK2                 0.009   trafficking protein, kinesin binding 2 
C1orf158              0.007   hypothetical protein LOC93190 
NKX6-2                0.007   NK6 transcription factor related, locus 2 
NKX3-2                0.007   NK3 homeobox 2 
SCARF1                0.007   scavenger receptor class F, member 1 isoform 3 precu...
LOC728351             0.007   PREDICTED: hypothetical protein 
FHDC1                 0.007   FH2 domain containing 1 
SFPQ                  0.007   splicing factor proline/glutamine rich (polypyrimidin...
ZNF280D               0.007   suppressor of hairy wing homolog 4 isoform 2 
ZNF280D               0.007   suppressor of hairy wing homolog 4 isoform 1 
SUPT16H               0.005   chromatin-specific transcription elongation factor la...
C11orf30              0.005   EMSY protein 
USP29                 0.005   ubiquitin specific peptidase 29 
GLTSCR1               0.005   glioma tumor suppressor candidate region gene 1 [Ho...
SLAIN2                0.005   SLAIN motif family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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