Guide to the Human Genome
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Search of human proteins with 239755871

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755871 PREDICTED: hypothetical protein [Homo sapiens]
         (282 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755871 PREDICTED: hypothetical protein [Homo sapiens]           596   e-171
gi|239750347 PREDICTED: hypothetical protein XP_002347376 [Homo ...   596   e-171
gi|239744651 PREDICTED: hypothetical protein XP_002343214 [Homo ...   596   e-171
gi|60097902 filaggrin [Homo sapiens]                                   39   0.004
gi|40807452 peroxisome proliferator-activated receptor gamma, co...    39   0.007
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             37   0.025
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ...    35   0.057
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        35   0.097
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]            34   0.13 
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]            34   0.13 
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            33   0.22 
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso...    33   0.28 
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso...    33   0.28 
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]     33   0.37 
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            32   0.48 
gi|239757248 PREDICTED: similar to OVO homolog-like 1 [Homo sapi...    32   0.63 
gi|239751756 PREDICTED: similar to OVO homolog-like 1 [Homo sapi...    32   0.63 
gi|239746256 PREDICTED: similar to OVO homolog-like 1 [Homo sapi...    32   0.63 
gi|31742505 Rho family guanine-nucleotide exchange factor [Homo ...    32   0.63 
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]    32   0.82 
gi|225703102 major facilitator superfamily domain containing 10 ...    31   1.1  
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]           31   1.1  
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]            31   1.1  
gi|225703104 major facilitator superfamily domain containing 10 ...    31   1.1  
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            31   1.4  
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            31   1.4  
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]            31   1.4  
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            31   1.4  
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]            31   1.4  
gi|7706457 A-kinase anchor protein 11 [Homo sapiens]                   30   1.8  

>gi|239755871 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 282

 Score =  596 bits (1536), Expect = e-171
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
           MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC
Sbjct: 1   MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60

Query: 61  VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
           VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG
Sbjct: 61  VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120

Query: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
           HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL
Sbjct: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180

Query: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
           CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS
Sbjct: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240

Query: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
           HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE
Sbjct: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282


>gi|239750347 PREDICTED: hypothetical protein XP_002347376 [Homo
           sapiens]
          Length = 282

 Score =  596 bits (1536), Expect = e-171
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
           MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC
Sbjct: 1   MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60

Query: 61  VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
           VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG
Sbjct: 61  VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120

Query: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
           HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL
Sbjct: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180

Query: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
           CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS
Sbjct: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240

Query: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
           HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE
Sbjct: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282


>gi|239744651 PREDICTED: hypothetical protein XP_002343214 [Homo
           sapiens]
          Length = 282

 Score =  596 bits (1536), Expect = e-171
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
           MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC
Sbjct: 1   MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60

Query: 61  VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
           VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG
Sbjct: 61  VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120

Query: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
           HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL
Sbjct: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180

Query: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
           CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS
Sbjct: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240

Query: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
           HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE
Sbjct: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 46/195 (23%), Positives = 66/195 (33%), Gaps = 24/195 (12%)

Query: 96   SAEAAPGPRHKVAQPVGHRHGQQ------RGHK----------HRAHSADEGLRVGWHLS 139
            S     G RH+ AQ        Q      RGH           H  HS D     G H S
Sbjct: 2758 STRGRQGSRHEQAQDSSRHSASQDGQDTIRGHPGSSRGGRQGYHHEHSVDSSGHSGSHHS 2817

Query: 140  LQAAQARAEQNRGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQAR 195
               +Q R++ +RG + S   +         G G R SG+R   +  H+  S    + Q +
Sbjct: 2818 HTTSQGRSDASRGQSGSRSASRTTRNEEQSGDGSRHSGSRHHEASTHADISRHSQAVQGQ 2877

Query: 196  WR-QRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG---PKCAAPCT 251
                RR   QG  + +          S   +G+A+       +     G   P+      
Sbjct: 2878 SEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHHGSAQEQLRDGSRHPRSHQEDR 2937

Query: 252  WGSGHSGHLDTWAGT 266
             G GHS      +GT
Sbjct: 2938 AGHGHSADSSRQSGT 2952



 Score = 36.6 bits (83), Expect = 0.025
 Identities = 44/184 (23%), Positives = 67/184 (36%), Gaps = 15/184 (8%)

Query: 98   EAAPGPRHKVAQPV-----GHRHGQQRGHK--HRAHSADEGLRVGWHLSLQAAQARAEQN 150
            +A    RH  +Q       GH    +RG +  H   S D     G H S   +Q R++ +
Sbjct: 824  QARDNSRHSASQDGQDTIRGHPGSSRRGRQGSHHEQSVDRSGHSGSHHSHTTSQGRSDAS 883

Query: 151  RGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCS-VQG 205
            RG + S   +           G R SG+R   +  H+  S    + Q +    R S  QG
Sbjct: 884  RGQSGSRSASRTTRNEEQSRDGSRHSGSRHHEASSHADISRHSQAGQGQSEGSRTSRRQG 943

Query: 206  EKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG---PKCAAPCTWGSGHSGHLDT 262
              + +          S   +G+A+   R   +  S  G   P+       G GHS     
Sbjct: 944  SSVSQDSDSEGHSEDSERWSGSASRNHRGSAQEQSRHGSRHPRSHHEDRAGHGHSADSSR 1003

Query: 263  WAGT 266
             +GT
Sbjct: 1004 QSGT 1007



 Score = 36.6 bits (83), Expect = 0.025
 Identities = 46/195 (23%), Positives = 66/195 (33%), Gaps = 24/195 (12%)

Query: 96   SAEAAPGPRHKVAQPVGHRHGQQ------RGHK----------HRAHSADEGLRVGWHLS 139
            S     G RH+ AQ        Q      RGH           H  HS D     G H S
Sbjct: 3082 STRGRQGSRHEQAQDSSRHSASQYGQDTIRGHPGSSRGGRQGYHHEHSVDSSGHSGSHHS 3141

Query: 140  LQAAQARAEQNRGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQAR 195
               +Q R++ +RG + S   +         G   R S +R   +  H+  S    + Q +
Sbjct: 3142 HTTSQGRSDASRGQSGSRSASRTTRNEEQSGDSSRHSVSRHHEASTHADISRHSQAVQGQ 3201

Query: 196  WR-QRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG---PKCAAPCT 251
                RR   QG  + +          S   +G+A+   R   +  S  G   P+      
Sbjct: 3202 SEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHRGSVQEQSRHGSRHPRSHHEDR 3261

Query: 252  WGSGHSGHLDTWAGT 266
             G GHS      +GT
Sbjct: 3262 AGHGHSADRSRQSGT 3276



 Score = 32.3 bits (72), Expect = 0.48
 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 15/184 (8%)

Query: 98   EAAPGPRHKVAQPV-----GHRHGQQRGHK--HRAHSADEGLRVGWHLSLQAAQARAEQN 150
            +A    RH  +Q       GH    +RG +  H   S D     G H S   +Q R++ +
Sbjct: 3417 QARDSSRHSASQEGQDTIRGHPGSSRRGRQGSHYEQSVDRSGHSGSHHSHTTSQGRSDAS 3476

Query: 151  RGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCS-VQG 205
            RG + S   + +       G G R S +    +   +  S    S Q +    R S  QG
Sbjct: 3477 RGQSGSRSASRQTRNDEQSGDGSRHSWSHHHEASTQADSSRHSQSGQGQSAGPRTSRNQG 3536

Query: 206  EKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG---PKCAAPCTWGSGHSGHLDT 262
              + +          S   +G+A+   R   +  S  G   P        G GHS     
Sbjct: 3537 SSVSQDSDSQGHSEDSERWSGSASRNHRGSAQEQSRDGSRHPTSHHEDRAGHGHSAESSR 3596

Query: 263  WAGT 266
             +GT
Sbjct: 3597 QSGT 3600



 Score = 29.3 bits (64), Expect = 4.1
 Identities = 40/146 (27%), Positives = 54/146 (36%), Gaps = 21/146 (14%)

Query: 98   EAAPGPRHKVAQP----VGHRHGQQRGHKHRAH---SADEGLRVGWHLSLQAAQARAEQN 150
            +A    RH  +Q     +    G  RG +  +H   S D     G H S   +Q R++ +
Sbjct: 1796 QARDSSRHSASQEGQDTIRGHPGSSRGGRQGSHYEQSVDSSGHSGSHHSHTTSQERSDVS 1855

Query: 151  RGDALSGGGAV------RVPGGSGRRRSGAR------RLRSLCHSSPSLQVSSPQARWRQ 198
            RG   SG  +V          G G R SG+R      R  S  HS      SS     R 
Sbjct: 1856 RGQ--SGSRSVSRQTRNEKQSGDGSRHSGSRHHEASSRADSSRHSQVGQGQSSGPRTSRN 1913

Query: 199  RRCSVQGEKLQRSGRGPSCRSSSSTS 224
            +  SV  +   +     S R S S S
Sbjct: 1914 QGSSVSQDSDSQGHSEDSERWSGSAS 1939



 Score = 29.3 bits (64), Expect = 4.1
 Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 31/192 (16%)

Query: 98   EAAPGPRHKVAQP----VGHRHGQQRGHK---HRAHSADEGLRVGWHLSLQAAQARAEQN 150
            +A    RH  +Q     +    G  RG +   H+  S D     G H S   +Q R++ +
Sbjct: 2121 QAQDSSRHSASQEGQDTIRGHPGPSRGGRQGSHQEQSVDRSGHSGSHHSHTTSQGRSDAS 2180

Query: 151  RGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGE 206
            RG + S   + +       G G R SG+       H + S   SS  +   Q + S  G 
Sbjct: 2181 RGQSGSRSASRKTYDKEQSGDGSRHSGSHH-----HEASSWADSSRHSLVGQGQSS--GP 2233

Query: 207  KLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG------------PKCAAPCTWGS 254
            +  R  RG S    S +   +     R+     +H G            P+       G 
Sbjct: 2234 RTSRP-RGSSVSQDSDSEGHSEDSERRSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGH 2292

Query: 255  GHSGHLDTWAGT 266
            GHS      +GT
Sbjct: 2293 GHSAESSRQSGT 2304


>gi|40807452 peroxisome proliferator-activated receptor gamma,
            coactivator-related 1 [Homo sapiens]
          Length = 1664

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 139  SLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQ 198
            S Q  Q R  +N     SG         S    S + R RS         +S P  RWR+
Sbjct: 1415 SSQGWQGRRGRNSRSVSSGSNRTSEASSSSSSSSSSSRSRSR-------SLSPPHKRWRR 1467

Query: 199  RRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRT 234
              CS  G   + S    S  SSSS+S+ +++   R+
Sbjct: 1468 SSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRS 1503


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 122 KHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSLC 181
           KHR    DEG + G   S +++ +R+    G   SG G+ +  GGSG+R SGA   R   
Sbjct: 281 KHR----DEGRKTG---SQRSSGSRSPSPSGG--SGWGSPQRNGGSGQR-SGAHGGRPGS 330

Query: 182 HSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSST 223
             SP  + SSP  R R +  +       R    PS RS+ S+
Sbjct: 331 AHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSS 372



 Score = 28.9 bits (63), Expect = 5.3
 Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 15/126 (11%)

Query: 112 GHRHGQQRGHKHRAHSADEG-------LRVGWHLSLQAAQARAEQN---RGDALSGGGAV 161
           G R G   G    AHS  +        +R     +     AR +++   R    S G   
Sbjct: 318 GQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG 377

Query: 162 RVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSS 221
           R  GG+GRRR   RR R    S+     S+P+ R R+R          RS       S S
Sbjct: 378 RAAGGAGRRRRRRRRRRRSRSSA-----SAPRRRGRRRPRPAPPRGSSRSLSRARSSSDS 432

Query: 222 STSAGA 227
            +  GA
Sbjct: 433 GSGRGA 438


>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
           sapiens]
          Length = 306

 Score = 35.4 bits (80), Expect = 0.057
 Identities = 49/180 (27%), Positives = 67/180 (37%), Gaps = 30/180 (16%)

Query: 97  AEAAPGPRHKVAQPVGHRHGQQRGHKHRAH-SADEGLRVGWHLSLQAAQARAEQNRGDAL 155
           A AAP P        GHR  +++  + +   +A  G R G   S  A Q RA+    +A 
Sbjct: 124 AAAAPAPTSS-----GHRTEKRKPQQPQCRPAAGTGQRRGSGCSPSADQQRAQDREEEAT 178

Query: 156 SGGGAVRVPGGSGRRRSGARRLRSLC------------HSSPSLQVSSPQARWRQRRCSV 203
               A  VP  SG R    +RL+  C             SSPS Q +    + R  R S 
Sbjct: 179 ----AAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSRQPAGGTGQRRGSRSSP 234

Query: 204 QGEKLQRSGR-----GPSCRSSSSTS--AGAATYTVRTVPKLASHTGPKCA-APCTWGSG 255
             ++ +   R      P  R +  T    G A   V T        G   A AP + G+G
Sbjct: 235 SADQQRAQDREEEAAQPQRRPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAPAPTSTGTG 294


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 34.7 bits (78), Expect = 0.097
 Identities = 41/143 (28%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 94  PVSAEAAPGP---RHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQN 150
           P S + AP P   R   + P        R  + ++HS     R+G   S   A+    ++
Sbjct: 438 PESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRS 497

Query: 151 RGDALSGGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQG----E 206
           R     G    R P    R RS  R  RS           SPQ R R R     G     
Sbjct: 498 RTPTKRGHSRSRSPQWR-RSRSAQRWGRS----------RSPQRRGRSRSPQRPGWSRSR 546

Query: 207 KLQRSGRGPSCRSSSSTSAGAAT 229
             QR GR  S R   S S   AT
Sbjct: 547 NTQRRGRSRSARRGRSHSRSPAT 569


>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 737

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 36/129 (27%), Positives = 45/129 (34%), Gaps = 19/129 (14%)

Query: 146 RAEQNRGDALSGGG------------AVRVPGGSG-----RRRSGARRLRSLCHSSPSLQ 188
           RA Q RG  L GGG            A R PG        RRR+   R + L        
Sbjct: 392 RASQQRGVRLEGGGRQQLVPSQVAWRAARAPGRHQAAVLRRRRARVARAQQLARLRVGHA 451

Query: 189 VSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTGPKC-A 247
           V +PQA   Q    +   + + S   PS +    T A +            +  GP   A
Sbjct: 452 VQAPQALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAAREAARLRGARPGPAASA 511

Query: 248 APCTW-GSG 255
           A   W GSG
Sbjct: 512 ATRMWQGSG 520


>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 737

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 36/129 (27%), Positives = 45/129 (34%), Gaps = 19/129 (14%)

Query: 146 RAEQNRGDALSGGG------------AVRVPGGSG-----RRRSGARRLRSLCHSSPSLQ 188
           RA Q RG  L GGG            A R PG        RRR+   R + L        
Sbjct: 392 RASQQRGVRLEGGGRQQLVPSQVAWRAARAPGRHQAAVLRRRRARVARAQQLARLRVGHA 451

Query: 189 VSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTGPKC-A 247
           V +PQA   Q    +   + + S   PS +    T A +            +  GP   A
Sbjct: 452 VQAPQALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAAREAARLRGARPGPAASA 511

Query: 248 APCTW-GSG 255
           A   W GSG
Sbjct: 512 ATRMWQGSG 520


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 16/132 (12%)

Query: 94  PVSAEAAPGPRHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQNRGD 153
           P        P  +V +P G   G  R  + R+ +A      G     +A+++RA    G 
Sbjct: 207 PAPQPGPTAPPARVREP-GRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265

Query: 154 ALSGG---GAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQR 210
              GG    A R PGG G R  GA            L  ++P +R RQ    + G     
Sbjct: 266 GFHGGEKAAAPRAPGGGGGRNPGA------------LGRAAPPSRARQDAWGLSGCATVG 313

Query: 211 SGRGPSCRSSSS 222
             RG   R+ SS
Sbjct: 314 LRRGDCDRAGSS 325


>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3p [Homo sapiens]
          Length = 476

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 104 RHKVAQPVGHRHGQQRGHKHRAHSADEGL------RVGWHLSLQAAQARAEQNRGDALSG 157
           R +  +    R+    G +HRAH   E L         W       Q R ++   D+ + 
Sbjct: 350 RSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKG--PGQDRGKKGSQDSGAP 407

Query: 158 GGAVRVPGGSGR--RRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGE--KLQRSGR 213
           G A+   G + R       R+ R      P+LQ+  P AR+R R C       K + SG 
Sbjct: 408 GEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGT 467

Query: 214 GPSCRSSS 221
           GP  R  +
Sbjct: 468 GPEKREEA 475


>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3pdelta [Homo sapiens]
          Length = 443

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 104 RHKVAQPVGHRHGQQRGHKHRAHSADEGL------RVGWHLSLQAAQARAEQNRGDALSG 157
           R +  +    R+    G +HRAH   E L         W       Q R ++   D+ + 
Sbjct: 317 RSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKG--PGQDRGKKGSQDSGAP 374

Query: 158 GGAVRVPGGSGR--RRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGE--KLQRSGR 213
           G A+   G + R       R+ R      P+LQ+  P AR+R R C       K + SG 
Sbjct: 375 GEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGT 434

Query: 214 GPSCRSSS 221
           GP  R  +
Sbjct: 435 GPEKREEA 442


>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
          Length = 1812

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 63   RRHVNTSLPLDSFTFPHFHLD-LCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHG--QQR 119
            +R  NTS P      P  H+D     + K +VP      P    KV+Q +  R G    R
Sbjct: 1641 QRKQNTSRP------PSMHVDDFVAAESKEVVPQDGIPPPKRPLKVSQKISSRGGFSGNR 1694

Query: 120  GHKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRS 179
            G +   HS +         +  A++    +  G   S   A   P G+     G +   +
Sbjct: 1695 GGRGAFHSQNR------FFTPPASKGNYSRREGTRGSSWSAQNTPRGNYNESRGGQSNFN 1748

Query: 180  LCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGA 227
                 P   +SS   R   R  + +G    R G GPS  S++S S G+
Sbjct: 1749 RGPLPPLRPLSSTGYRPSPRDRASRG----RGGLGPSWASANSGSGGS 1792


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 42/147 (28%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 142 AAQARAEQNRGDALSGGGAVR-------VPGGSGRRRSGARRLRSLCHSSPSLQVSSPQA 194
           A+  R    + DA  GGG           PGG    R+GARR   L      L+  S   
Sbjct: 139 ASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGS--- 195

Query: 195 RWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGA--ATYTVRTVPKLA---SHTGPKCAAP 249
               RRC   G     SG  P  R+  +   GA  A   VR   K A   S   P     
Sbjct: 196 ---SRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLA 252

Query: 250 CTWGSGHSGHLDTWAGTFSLTCAHAKG 276
              G+   GH       FS   +H+ G
Sbjct: 253 GCVGTRARGHGGVQRQRFSAPSSHSTG 279


>gi|239757248 PREDICTED: similar to OVO homolog-like 1 [Homo
           sapiens]
          Length = 246

 Score = 32.0 bits (71), Expect = 0.63
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 148 EQNRGDALSGGGAVRVPGGSGRRRSGAR--RLRSLCHS---SPSLQVSSPQARWRQR 199
           +Q RGDA   GG + VPGG G+ R         S C S    P+ Q SS +  W  R
Sbjct: 83  DQLRGDAYIPGGPLTVPGGKGQERRSVTIWLFSSDCSSLGGPPAQQSSSVRDPWTAR 139


>gi|239751756 PREDICTED: similar to OVO homolog-like 1 [Homo
           sapiens]
          Length = 234

 Score = 32.0 bits (71), Expect = 0.63
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 148 EQNRGDALSGGGAVRVPGGSGRRRSGAR--RLRSLCHS---SPSLQVSSPQARWRQR 199
           +Q RGDA   GG + VPGG G+ R         S C S    P+ Q SS +  W  R
Sbjct: 71  DQLRGDAYIPGGPLTVPGGKGQERRSVTIWLFSSDCSSLGGPPAQQSSSVRDPWTAR 127


>gi|239746256 PREDICTED: similar to OVO homolog-like 1 [Homo
           sapiens]
          Length = 185

 Score = 32.0 bits (71), Expect = 0.63
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 148 EQNRGDALSGGGAVRVPGGSGRRRSGAR--RLRSLCHS---SPSLQVSSPQARWRQR 199
           +Q RGDA   GG + VPGG G+ R         S C S    P+ Q SS +  W  R
Sbjct: 22  DQLRGDAYIPGGPLTVPGGKGQERRSVTIWLFSSDCSSLGGPPAQQSSSVRDPWTAR 78


>gi|31742505 Rho family guanine-nucleotide exchange factor [Homo
            sapiens]
          Length = 1114

 Score = 32.0 bits (71), Expect = 0.63
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 170  RRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAAT 229
            + S A  L  L  S  S +  S ++ + +R  S QGEK +R     + RS+    AGA+T
Sbjct: 1029 KESSALSLAGLFQSDDSHETCSSKSAFLERGESSQGEKEERDEEETATRSTEEERAGAST 1088


>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
          Length = 1462

 Score = 31.6 bits (70), Expect = 0.82
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 161 VRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSS 220
           + +P      +S  RR++S C    S + SS  +    +R   + +K  +S    S R S
Sbjct: 459 ILIPSDIESSKSSTRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDS 518

Query: 221 SSTSAGAATYT-----VRTVPKLASHTGPKCAAPCTWGSGH 256
             + + + +Y+      RT  K +SH+  +  +  +  SGH
Sbjct: 519 YRSKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGH 559


>gi|225703102 major facilitator superfamily domain containing 10
           [Homo sapiens]
          Length = 455

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 226 GAATYTVRTVPKLASHTGPKCAAPCTWGSGHSGHLDTWAGTFSL 269
           G    T+R++  LA   GP  AA   W +G      TW+G F L
Sbjct: 394 GTVMGTLRSLGALARAAGPLVAASVYWLAGAQACFTTWSGLFLL 437


>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
          Length = 195

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 14/83 (16%)

Query: 95  VSAEAAPGPRHKVA--QPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQNRG 152
           + AE   G RH+ A   P    H  +     R H              Q  Q +AE  R 
Sbjct: 84  IGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQ------------QQQQDQAEARRR 131

Query: 153 DALSGGGAVRVPGGSGRRRSGAR 175
           +   G G    PGGS R R G R
Sbjct: 132 ERCGGSGVRVAPGGSRRGRHGRR 154


>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 141

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 148 EQNRGDALSGGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEK 207
           +Q RG A  GG +     G+G RR GAR+ R    S P      PQA        V G  
Sbjct: 25  QQRRGSAPRGGESPDPGAGAGDRRGGARQ-RPQRLSEP----RQPQA------VPVPGAA 73

Query: 208 LQRSGRGPSCRSSSSTSAGAATYTVR 233
             R G  P+  S SS+  G A+   R
Sbjct: 74  SYRLGLPPTLTSLSSSVPGRASPAAR 99



 Score = 29.6 bits (65), Expect = 3.1
 Identities = 36/109 (33%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 98  EAAPGPRHKVAQPVGHRHGQQRGHKHRA-HSADEGLRVGWHLSLQAAQARAEQNRGDALS 156
           E  PGP    ++   H+  Q+RG   R   S D G   G     +   AR    R     
Sbjct: 9   EETPGPASTASRTRVHQ--QRRGSAPRGGESPDPGAGAGD----RRGGARQRPQRLSEPR 62

Query: 157 GGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRR--CSV 203
              AV VPG +  R      L SL  S P    +SP AR R RR  CS+
Sbjct: 63  QPQAVPVPGAASYRLGLPPTLTSLSSSVPGR--ASPAARLRNRRPGCSL 109


>gi|225703104 major facilitator superfamily domain containing 10
           [Homo sapiens]
          Length = 455

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 226 GAATYTVRTVPKLASHTGPKCAAPCTWGSGHSGHLDTWAGTFSL 269
           G    T+R++  LA   GP  AA   W +G      TW+G F L
Sbjct: 394 GTVMGTLRSLGALARAAGPLVAASVYWLAGAQACFTTWSGLFLL 437


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 34/142 (23%), Positives = 50/142 (35%), Gaps = 13/142 (9%)

Query: 104 RHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRV 163
           R K A   G +  + RG K     A +  R  W    +AA A   +NRG       A   
Sbjct: 61  RQKAA--AGGKKARLRGQKGAV--AGKEARQHWQ---KAAGAGGAENRGGGEQKAAAAGT 113

Query: 164 PGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSST 223
               GR R   RR         +    S + RWR ++ +  G K + +G   +  ++   
Sbjct: 114 KSLGGRGRKPRRR------GQKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVK 167

Query: 224 SAGAATYTVRTVPKLASHTGPK 245
           S G             S +G K
Sbjct: 168 SQGGEKPQKAAAAGAKSRSGKK 189


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 15/86 (17%)

Query: 90  KHLVPVSAEAAPGPRHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQ 149
           +HL P +A AA       AQ  G R  Q R H+  A  A        H     A+ R  +
Sbjct: 901 RHLAPAAAAAA-------AQ--GVRAAQGRAHRPGAQGAPS------HRHRPGARGRRSR 945

Query: 150 NRGDALSGGGAVRVPGGSGRRRSGAR 175
            R      GGA       GRRR G +
Sbjct: 946 RRAAVALAGGAHPARAALGRRRGGGQ 971


>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 142 AAQARAEQNRGDALSGGGA-------VRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQA 194
           A+  R    + DA  GGG           PGG    R+GARR   L      L+  S   
Sbjct: 139 ASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGS--- 195

Query: 195 RWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAA 228
               RRC   G     SG  P  R+  +   GAA
Sbjct: 196 ---SRRCQGLGSSWGGSGTPPPPRALWNRHGGAA 226


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 15/86 (17%)

Query: 90  KHLVPVSAEAAPGPRHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQ 149
           +HL P +A AA       AQ  G R  Q R H+  A  A        H     A+ R  +
Sbjct: 901 RHLAPAAAAAA-------AQ--GVRAAQGRAHRPGAQGAPS------HRHRPGARGRRSR 945

Query: 150 NRGDALSGGGAVRVPGGSGRRRSGAR 175
            R      GGA       GRRR G +
Sbjct: 946 RRAAVALAGGAHPARAALGRRRGGGQ 971


>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 142 AAQARAEQNRGDALSGGGA-------VRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQA 194
           A+  R    + DA  GGG           PGG    R+GARR   L      L+  S   
Sbjct: 139 ASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGS--- 195

Query: 195 RWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAA 228
               RRC   G     SG  P  R+  +   GAA
Sbjct: 196 ---SRRCQGLGSSWGGSGTPPPPRALWNRHGGAA 226


>gi|7706457 A-kinase anchor protein 11 [Homo sapiens]
          Length = 1901

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 136 WHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQAR 195
           +H+S  A QA+A  +  D+ S G + +V   +  R   A  LR++C   PS      Q  
Sbjct: 792 YHISSTACQAKAHLSSDDSNSNGDSAQVHIATKNREEKAACLRNIC--LPSEHNPGNQND 849

Query: 196 WRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTV 232
           ++     ++   +Q S + P+  +  S  + A  +T+
Sbjct: 850 FKPTNDDIE---MQSSSKLPNDPAIISNFSAAVVHTI 883


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,185,490
Number of Sequences: 37866
Number of extensions: 668022
Number of successful extensions: 2403
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 146
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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