Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239755871
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755871 PREDICTED: hypothetical protein [Homo sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755871 PREDICTED: hypothetical protein [Homo sapiens] 596 e-171
gi|239750347 PREDICTED: hypothetical protein XP_002347376 [Homo ... 596 e-171
gi|239744651 PREDICTED: hypothetical protein XP_002343214 [Homo ... 596 e-171
gi|60097902 filaggrin [Homo sapiens] 39 0.004
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 39 0.007
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.025
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 35 0.057
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.097
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso... 33 0.28
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso... 33 0.28
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 33 0.37
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|239757248 PREDICTED: similar to OVO homolog-like 1 [Homo sapi... 32 0.63
gi|239751756 PREDICTED: similar to OVO homolog-like 1 [Homo sapi... 32 0.63
gi|239746256 PREDICTED: similar to OVO homolog-like 1 [Homo sapi... 32 0.63
gi|31742505 Rho family guanine-nucleotide exchange factor [Homo ... 32 0.63
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 32 0.82
gi|225703102 major facilitator superfamily domain containing 10 ... 31 1.1
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens] 31 1.1
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|225703104 major facilitator superfamily domain containing 10 ... 31 1.1
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|7706457 A-kinase anchor protein 11 [Homo sapiens] 30 1.8
>gi|239755871 PREDICTED: hypothetical protein [Homo sapiens]
Length = 282
Score = 596 bits (1536), Expect = e-171
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC
Sbjct: 1 MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
Query: 61 VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG
Sbjct: 61 VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
Query: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL
Sbjct: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
Query: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS
Sbjct: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
Query: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE
Sbjct: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
>gi|239750347 PREDICTED: hypothetical protein XP_002347376 [Homo
sapiens]
Length = 282
Score = 596 bits (1536), Expect = e-171
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC
Sbjct: 1 MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
Query: 61 VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG
Sbjct: 61 VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
Query: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL
Sbjct: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
Query: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS
Sbjct: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
Query: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE
Sbjct: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
>gi|239744651 PREDICTED: hypothetical protein XP_002343214 [Homo
sapiens]
Length = 282
Score = 596 bits (1536), Expect = e-171
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC
Sbjct: 1 MNVFVWDTRISRYHRDGLGRQLFPEQEVGQVRPRLQVLLGLSSVPHGCLCLSPLHVPLSC 60
Query: 61 VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG
Sbjct: 61 VGRRHVNTSLPLDSFTFPHFHLDLCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHGQQRG 120
Query: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL
Sbjct: 121 HKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSL 180
Query: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS
Sbjct: 181 CHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLAS 240
Query: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE
Sbjct: 241 HTGPKCAAPCTWGSGHSGHLDTWAGTFSLTCAHAKGVDWAWE 282
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 39.3 bits (90), Expect = 0.004
Identities = 46/195 (23%), Positives = 66/195 (33%), Gaps = 24/195 (12%)
Query: 96 SAEAAPGPRHKVAQPVGHRHGQQ------RGHK----------HRAHSADEGLRVGWHLS 139
S G RH+ AQ Q RGH H HS D G H S
Sbjct: 2758 STRGRQGSRHEQAQDSSRHSASQDGQDTIRGHPGSSRGGRQGYHHEHSVDSSGHSGSHHS 2817
Query: 140 LQAAQARAEQNRGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQAR 195
+Q R++ +RG + S + G G R SG+R + H+ S + Q +
Sbjct: 2818 HTTSQGRSDASRGQSGSRSASRTTRNEEQSGDGSRHSGSRHHEASTHADISRHSQAVQGQ 2877
Query: 196 WR-QRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG---PKCAAPCT 251
RR QG + + S +G+A+ + G P+
Sbjct: 2878 SEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHHGSAQEQLRDGSRHPRSHQEDR 2937
Query: 252 WGSGHSGHLDTWAGT 266
G GHS +GT
Sbjct: 2938 AGHGHSADSSRQSGT 2952
Score = 36.6 bits (83), Expect = 0.025
Identities = 44/184 (23%), Positives = 67/184 (36%), Gaps = 15/184 (8%)
Query: 98 EAAPGPRHKVAQPV-----GHRHGQQRGHK--HRAHSADEGLRVGWHLSLQAAQARAEQN 150
+A RH +Q GH +RG + H S D G H S +Q R++ +
Sbjct: 824 QARDNSRHSASQDGQDTIRGHPGSSRRGRQGSHHEQSVDRSGHSGSHHSHTTSQGRSDAS 883
Query: 151 RGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCS-VQG 205
RG + S + G R SG+R + H+ S + Q + R S QG
Sbjct: 884 RGQSGSRSASRTTRNEEQSRDGSRHSGSRHHEASSHADISRHSQAGQGQSEGSRTSRRQG 943
Query: 206 EKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG---PKCAAPCTWGSGHSGHLDT 262
+ + S +G+A+ R + S G P+ G GHS
Sbjct: 944 SSVSQDSDSEGHSEDSERWSGSASRNHRGSAQEQSRHGSRHPRSHHEDRAGHGHSADSSR 1003
Query: 263 WAGT 266
+GT
Sbjct: 1004 QSGT 1007
Score = 36.6 bits (83), Expect = 0.025
Identities = 46/195 (23%), Positives = 66/195 (33%), Gaps = 24/195 (12%)
Query: 96 SAEAAPGPRHKVAQPVGHRHGQQ------RGHK----------HRAHSADEGLRVGWHLS 139
S G RH+ AQ Q RGH H HS D G H S
Sbjct: 3082 STRGRQGSRHEQAQDSSRHSASQYGQDTIRGHPGSSRGGRQGYHHEHSVDSSGHSGSHHS 3141
Query: 140 LQAAQARAEQNRGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQAR 195
+Q R++ +RG + S + G R S +R + H+ S + Q +
Sbjct: 3142 HTTSQGRSDASRGQSGSRSASRTTRNEEQSGDSSRHSVSRHHEASTHADISRHSQAVQGQ 3201
Query: 196 WR-QRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG---PKCAAPCT 251
RR QG + + S +G+A+ R + S G P+
Sbjct: 3202 SEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHRGSVQEQSRHGSRHPRSHHEDR 3261
Query: 252 WGSGHSGHLDTWAGT 266
G GHS +GT
Sbjct: 3262 AGHGHSADRSRQSGT 3276
Score = 32.3 bits (72), Expect = 0.48
Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 15/184 (8%)
Query: 98 EAAPGPRHKVAQPV-----GHRHGQQRGHK--HRAHSADEGLRVGWHLSLQAAQARAEQN 150
+A RH +Q GH +RG + H S D G H S +Q R++ +
Sbjct: 3417 QARDSSRHSASQEGQDTIRGHPGSSRRGRQGSHYEQSVDRSGHSGSHHSHTTSQGRSDAS 3476
Query: 151 RGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCS-VQG 205
RG + S + + G G R S + + + S S Q + R S QG
Sbjct: 3477 RGQSGSRSASRQTRNDEQSGDGSRHSWSHHHEASTQADSSRHSQSGQGQSAGPRTSRNQG 3536
Query: 206 EKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG---PKCAAPCTWGSGHSGHLDT 262
+ + S +G+A+ R + S G P G GHS
Sbjct: 3537 SSVSQDSDSQGHSEDSERWSGSASRNHRGSAQEQSRDGSRHPTSHHEDRAGHGHSAESSR 3596
Query: 263 WAGT 266
+GT
Sbjct: 3597 QSGT 3600
Score = 29.3 bits (64), Expect = 4.1
Identities = 40/146 (27%), Positives = 54/146 (36%), Gaps = 21/146 (14%)
Query: 98 EAAPGPRHKVAQP----VGHRHGQQRGHKHRAH---SADEGLRVGWHLSLQAAQARAEQN 150
+A RH +Q + G RG + +H S D G H S +Q R++ +
Sbjct: 1796 QARDSSRHSASQEGQDTIRGHPGSSRGGRQGSHYEQSVDSSGHSGSHHSHTTSQERSDVS 1855
Query: 151 RGDALSGGGAV------RVPGGSGRRRSGAR------RLRSLCHSSPSLQVSSPQARWRQ 198
RG SG +V G G R SG+R R S HS SS R
Sbjct: 1856 RGQ--SGSRSVSRQTRNEKQSGDGSRHSGSRHHEASSRADSSRHSQVGQGQSSGPRTSRN 1913
Query: 199 RRCSVQGEKLQRSGRGPSCRSSSSTS 224
+ SV + + S R S S S
Sbjct: 1914 QGSSVSQDSDSQGHSEDSERWSGSAS 1939
Score = 29.3 bits (64), Expect = 4.1
Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 31/192 (16%)
Query: 98 EAAPGPRHKVAQP----VGHRHGQQRGHK---HRAHSADEGLRVGWHLSLQAAQARAEQN 150
+A RH +Q + G RG + H+ S D G H S +Q R++ +
Sbjct: 2121 QAQDSSRHSASQEGQDTIRGHPGPSRGGRQGSHQEQSVDRSGHSGSHHSHTTSQGRSDAS 2180
Query: 151 RGDALSGGGAVRV----PGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGE 206
RG + S + + G G R SG+ H + S SS + Q + S G
Sbjct: 2181 RGQSGSRSASRKTYDKEQSGDGSRHSGSHH-----HEASSWADSSRHSLVGQGQSS--GP 2233
Query: 207 KLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTG------------PKCAAPCTWGS 254
+ R RG S S + + R+ +H G P+ G
Sbjct: 2234 RTSRP-RGSSVSQDSDSEGHSEDSERRSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGH 2292
Query: 255 GHSGHLDTWAGT 266
GHS +GT
Sbjct: 2293 GHSAESSRQSGT 2304
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 38.5 bits (88), Expect = 0.007
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 139 SLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQ 198
S Q Q R +N SG S S + R RS +S P RWR+
Sbjct: 1415 SSQGWQGRRGRNSRSVSSGSNRTSEASSSSSSSSSSSRSRSR-------SLSPPHKRWRR 1467
Query: 199 RRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRT 234
CS G + S S SSSS+S+ +++ R+
Sbjct: 1468 SSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRS 1503
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.6 bits (83), Expect = 0.025
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 122 KHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSLC 181
KHR DEG + G S +++ +R+ G SG G+ + GGSG+R SGA R
Sbjct: 281 KHR----DEGRKTG---SQRSSGSRSPSPSGG--SGWGSPQRNGGSGQR-SGAHGGRPGS 330
Query: 182 HSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSST 223
SP + SSP R R + + R PS RS+ S+
Sbjct: 331 AHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSS 372
Score = 28.9 bits (63), Expect = 5.3
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 15/126 (11%)
Query: 112 GHRHGQQRGHKHRAHSADEG-------LRVGWHLSLQAAQARAEQN---RGDALSGGGAV 161
G R G G AHS + +R + AR +++ R S G
Sbjct: 318 GQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG 377
Query: 162 RVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSS 221
R GG+GRRR RR R S+ S+P+ R R+R RS S S
Sbjct: 378 RAAGGAGRRRRRRRRRRRSRSSA-----SAPRRRGRRRPRPAPPRGSSRSLSRARSSSDS 432
Query: 222 STSAGA 227
+ GA
Sbjct: 433 GSGRGA 438
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 35.4 bits (80), Expect = 0.057
Identities = 49/180 (27%), Positives = 67/180 (37%), Gaps = 30/180 (16%)
Query: 97 AEAAPGPRHKVAQPVGHRHGQQRGHKHRAH-SADEGLRVGWHLSLQAAQARAEQNRGDAL 155
A AAP P GHR +++ + + +A G R G S A Q RA+ +A
Sbjct: 124 AAAAPAPTSS-----GHRTEKRKPQQPQCRPAAGTGQRRGSGCSPSADQQRAQDREEEAT 178
Query: 156 SGGGAVRVPGGSGRRRSGARRLRSLC------------HSSPSLQVSSPQARWRQRRCSV 203
A VP SG R +RL+ C SSPS Q + + R R S
Sbjct: 179 ----AAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSRQPAGGTGQRRGSRSSP 234
Query: 204 QGEKLQRSGR-----GPSCRSSSSTS--AGAATYTVRTVPKLASHTGPKCA-APCTWGSG 255
++ + R P R + T G A V T G A AP + G+G
Sbjct: 235 SADQQRAQDREEEAAQPQRRPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAPAPTSTGTG 294
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.097
Identities = 41/143 (28%), Positives = 50/143 (34%), Gaps = 18/143 (12%)
Query: 94 PVSAEAAPGP---RHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQN 150
P S + AP P R + P R + ++HS R+G S A+ ++
Sbjct: 438 PESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRS 497
Query: 151 RGDALSGGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQG----E 206
R G R P R RS R RS SPQ R R R G
Sbjct: 498 RTPTKRGHSRSRSPQWR-RSRSAQRWGRS----------RSPQRRGRSRSPQRPGWSRSR 546
Query: 207 KLQRSGRGPSCRSSSSTSAGAAT 229
QR GR S R S S AT
Sbjct: 547 NTQRRGRSRSARRGRSHSRSPAT 569
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.13
Identities = 36/129 (27%), Positives = 45/129 (34%), Gaps = 19/129 (14%)
Query: 146 RAEQNRGDALSGGG------------AVRVPGGSG-----RRRSGARRLRSLCHSSPSLQ 188
RA Q RG L GGG A R PG RRR+ R + L
Sbjct: 392 RASQQRGVRLEGGGRQQLVPSQVAWRAARAPGRHQAAVLRRRRARVARAQQLARLRVGHA 451
Query: 189 VSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTGPKC-A 247
V +PQA Q + + + S PS + T A + + GP A
Sbjct: 452 VQAPQALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAAREAARLRGARPGPAASA 511
Query: 248 APCTW-GSG 255
A W GSG
Sbjct: 512 ATRMWQGSG 520
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.13
Identities = 36/129 (27%), Positives = 45/129 (34%), Gaps = 19/129 (14%)
Query: 146 RAEQNRGDALSGGG------------AVRVPGGSG-----RRRSGARRLRSLCHSSPSLQ 188
RA Q RG L GGG A R PG RRR+ R + L
Sbjct: 392 RASQQRGVRLEGGGRQQLVPSQVAWRAARAPGRHQAAVLRRRRARVARAQQLARLRVGHA 451
Query: 189 VSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTVRTVPKLASHTGPKC-A 247
V +PQA Q + + + S PS + T A + + GP A
Sbjct: 452 VQAPQALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAAREAARLRGARPGPAASA 511
Query: 248 APCTW-GSG 255
A W GSG
Sbjct: 512 ATRMWQGSG 520
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 33.5 bits (75), Expect = 0.22
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 94 PVSAEAAPGPRHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQNRGD 153
P P +V +P G G R + R+ +A G +A+++RA G
Sbjct: 207 PAPQPGPTAPPARVREP-GRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
Query: 154 ALSGG---GAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQR 210
GG A R PGG G R GA L ++P +R RQ + G
Sbjct: 266 GFHGGEKAAAPRAPGGGGGRNPGA------------LGRAAPPSRARQDAWGLSGCATVG 313
Query: 211 SGRGPSCRSSSS 222
RG R+ SS
Sbjct: 314 LRRGDCDRAGSS 325
>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3p [Homo sapiens]
Length = 476
Score = 33.1 bits (74), Expect = 0.28
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 104 RHKVAQPVGHRHGQQRGHKHRAHSADEGL------RVGWHLSLQAAQARAEQNRGDALSG 157
R + + R+ G +HRAH E L W Q R ++ D+ +
Sbjct: 350 RSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKG--PGQDRGKKGSQDSGAP 407
Query: 158 GGAVRVPGGSGR--RRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGE--KLQRSGR 213
G A+ G + R R+ R P+LQ+ P AR+R R C K + SG
Sbjct: 408 GEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGT 467
Query: 214 GPSCRSSS 221
GP R +
Sbjct: 468 GPEKREEA 475
>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3pdelta [Homo sapiens]
Length = 443
Score = 33.1 bits (74), Expect = 0.28
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 104 RHKVAQPVGHRHGQQRGHKHRAHSADEGL------RVGWHLSLQAAQARAEQNRGDALSG 157
R + + R+ G +HRAH E L W Q R ++ D+ +
Sbjct: 317 RSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKG--PGQDRGKKGSQDSGAP 374
Query: 158 GGAVRVPGGSGR--RRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGE--KLQRSGR 213
G A+ G + R R+ R P+LQ+ P AR+R R C K + SG
Sbjct: 375 GEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGT 434
Query: 214 GPSCRSSS 221
GP R +
Sbjct: 435 GPEKREEA 442
>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
Length = 1812
Score = 32.7 bits (73), Expect = 0.37
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 19/168 (11%)
Query: 63 RRHVNTSLPLDSFTFPHFHLD-LCLTKCKHLVPVSAEAAPGPRHKVAQPVGHRHG--QQR 119
+R NTS P P H+D + K +VP P KV+Q + R G R
Sbjct: 1641 QRKQNTSRP------PSMHVDDFVAAESKEVVPQDGIPPPKRPLKVSQKISSRGGFSGNR 1694
Query: 120 GHKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRS 179
G + HS + + A++ + G S A P G+ G + +
Sbjct: 1695 GGRGAFHSQNR------FFTPPASKGNYSRREGTRGSSWSAQNTPRGNYNESRGGQSNFN 1748
Query: 180 LCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGA 227
P +SS R R + +G R G GPS S++S S G+
Sbjct: 1749 RGPLPPLRPLSSTGYRPSPRDRASRG----RGGLGPSWASANSGSGGS 1792
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 32.3 bits (72), Expect = 0.48
Identities = 42/147 (28%), Positives = 51/147 (34%), Gaps = 18/147 (12%)
Query: 142 AAQARAEQNRGDALSGGGAVR-------VPGGSGRRRSGARRLRSLCHSSPSLQVSSPQA 194
A+ R + DA GGG PGG R+GARR L L+ S
Sbjct: 139 ASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGS--- 195
Query: 195 RWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGA--ATYTVRTVPKLA---SHTGPKCAAP 249
RRC G SG P R+ + GA A VR K A S P
Sbjct: 196 ---SRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLA 252
Query: 250 CTWGSGHSGHLDTWAGTFSLTCAHAKG 276
G+ GH FS +H+ G
Sbjct: 253 GCVGTRARGHGGVQRQRFSAPSSHSTG 279
>gi|239757248 PREDICTED: similar to OVO homolog-like 1 [Homo
sapiens]
Length = 246
Score = 32.0 bits (71), Expect = 0.63
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 148 EQNRGDALSGGGAVRVPGGSGRRRSGAR--RLRSLCHS---SPSLQVSSPQARWRQR 199
+Q RGDA GG + VPGG G+ R S C S P+ Q SS + W R
Sbjct: 83 DQLRGDAYIPGGPLTVPGGKGQERRSVTIWLFSSDCSSLGGPPAQQSSSVRDPWTAR 139
>gi|239751756 PREDICTED: similar to OVO homolog-like 1 [Homo
sapiens]
Length = 234
Score = 32.0 bits (71), Expect = 0.63
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 148 EQNRGDALSGGGAVRVPGGSGRRRSGAR--RLRSLCHS---SPSLQVSSPQARWRQR 199
+Q RGDA GG + VPGG G+ R S C S P+ Q SS + W R
Sbjct: 71 DQLRGDAYIPGGPLTVPGGKGQERRSVTIWLFSSDCSSLGGPPAQQSSSVRDPWTAR 127
>gi|239746256 PREDICTED: similar to OVO homolog-like 1 [Homo
sapiens]
Length = 185
Score = 32.0 bits (71), Expect = 0.63
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 148 EQNRGDALSGGGAVRVPGGSGRRRSGAR--RLRSLCHS---SPSLQVSSPQARWRQR 199
+Q RGDA GG + VPGG G+ R S C S P+ Q SS + W R
Sbjct: 22 DQLRGDAYIPGGPLTVPGGKGQERRSVTIWLFSSDCSSLGGPPAQQSSSVRDPWTAR 78
>gi|31742505 Rho family guanine-nucleotide exchange factor [Homo
sapiens]
Length = 1114
Score = 32.0 bits (71), Expect = 0.63
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 170 RRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAAT 229
+ S A L L S S + S ++ + +R S QGEK +R + RS+ AGA+T
Sbjct: 1029 KESSALSLAGLFQSDDSHETCSSKSAFLERGESSQGEKEERDEEETATRSTEEERAGAST 1088
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 31.6 bits (70), Expect = 0.82
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 161 VRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSS 220
+ +P +S RR++S C S + SS + +R + +K +S S R S
Sbjct: 459 ILIPSDIESSKSSTRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDS 518
Query: 221 SSTSAGAATYT-----VRTVPKLASHTGPKCAAPCTWGSGH 256
+ + + +Y+ RT K +SH+ + + + SGH
Sbjct: 519 YRSKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGH 559
>gi|225703102 major facilitator superfamily domain containing 10
[Homo sapiens]
Length = 455
Score = 31.2 bits (69), Expect = 1.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 226 GAATYTVRTVPKLASHTGPKCAAPCTWGSGHSGHLDTWAGTFSL 269
G T+R++ LA GP AA W +G TW+G F L
Sbjct: 394 GTVMGTLRSLGALARAAGPLVAASVYWLAGAQACFTTWSGLFLL 437
>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 1.1
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 95 VSAEAAPGPRHKVA--QPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQNRG 152
+ AE G RH+ A P H + R H Q Q +AE R
Sbjct: 84 IGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQ------------QQQQDQAEARRR 131
Query: 153 DALSGGGAVRVPGGSGRRRSGAR 175
+ G G PGGS R R G R
Sbjct: 132 ERCGGSGVRVAPGGSRRGRHGRR 154
>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 31.2 bits (69), Expect = 1.1
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 148 EQNRGDALSGGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEK 207
+Q RG A GG + G+G RR GAR+ R S P PQA V G
Sbjct: 25 QQRRGSAPRGGESPDPGAGAGDRRGGARQ-RPQRLSEP----RQPQA------VPVPGAA 73
Query: 208 LQRSGRGPSCRSSSSTSAGAATYTVR 233
R G P+ S SS+ G A+ R
Sbjct: 74 SYRLGLPPTLTSLSSSVPGRASPAAR 99
Score = 29.6 bits (65), Expect = 3.1
Identities = 36/109 (33%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 98 EAAPGPRHKVAQPVGHRHGQQRGHKHRA-HSADEGLRVGWHLSLQAAQARAEQNRGDALS 156
E PGP ++ H+ Q+RG R S D G G + AR R
Sbjct: 9 EETPGPASTASRTRVHQ--QRRGSAPRGGESPDPGAGAGD----RRGGARQRPQRLSEPR 62
Query: 157 GGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRR--CSV 203
AV VPG + R L SL S P +SP AR R RR CS+
Sbjct: 63 QPQAVPVPGAASYRLGLPPTLTSLSSSVPGR--ASPAARLRNRRPGCSL 109
>gi|225703104 major facilitator superfamily domain containing 10
[Homo sapiens]
Length = 455
Score = 31.2 bits (69), Expect = 1.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 226 GAATYTVRTVPKLASHTGPKCAAPCTWGSGHSGHLDTWAGTFSL 269
G T+R++ LA GP AA W +G TW+G F L
Sbjct: 394 GTVMGTLRSLGALARAAGPLVAASVYWLAGAQACFTTWSGLFLL 437
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 30.8 bits (68), Expect = 1.4
Identities = 34/142 (23%), Positives = 50/142 (35%), Gaps = 13/142 (9%)
Query: 104 RHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQNRGDALSGGGAVRV 163
R K A G + + RG K A + R W +AA A +NRG A
Sbjct: 61 RQKAA--AGGKKARLRGQKGAV--AGKEARQHWQ---KAAGAGGAENRGGGEQKAAAAGT 113
Query: 164 PGGSGRRRSGARRLRSLCHSSPSLQVSSPQARWRQRRCSVQGEKLQRSGRGPSCRSSSST 223
GR R RR + S + RWR ++ + G K + +G + ++
Sbjct: 114 KSLGGRGRKPRRR------GQKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVK 167
Query: 224 SAGAATYTVRTVPKLASHTGPK 245
S G S +G K
Sbjct: 168 SQGGEKPQKAAAAGAKSRSGKK 189
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 30.8 bits (68), Expect = 1.4
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 90 KHLVPVSAEAAPGPRHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQ 149
+HL P +A AA AQ G R Q R H+ A A H A+ R +
Sbjct: 901 RHLAPAAAAAA-------AQ--GVRAAQGRAHRPGAQGAPS------HRHRPGARGRRSR 945
Query: 150 NRGDALSGGGAVRVPGGSGRRRSGAR 175
R GGA GRRR G +
Sbjct: 946 RRAAVALAGGAHPARAALGRRRGGGQ 971
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 142 AAQARAEQNRGDALSGGGA-------VRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQA 194
A+ R + DA GGG PGG R+GARR L L+ S
Sbjct: 139 ASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGS--- 195
Query: 195 RWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAA 228
RRC G SG P R+ + GAA
Sbjct: 196 ---SRRCQGLGSSWGGSGTPPPPRALWNRHGGAA 226
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 30.8 bits (68), Expect = 1.4
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 90 KHLVPVSAEAAPGPRHKVAQPVGHRHGQQRGHKHRAHSADEGLRVGWHLSLQAAQARAEQ 149
+HL P +A AA AQ G R Q R H+ A A H A+ R +
Sbjct: 901 RHLAPAAAAAA-------AQ--GVRAAQGRAHRPGAQGAPS------HRHRPGARGRRSR 945
Query: 150 NRGDALSGGGAVRVPGGSGRRRSGAR 175
R GGA GRRR G +
Sbjct: 946 RRAAVALAGGAHPARAALGRRRGGGQ 971
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 142 AAQARAEQNRGDALSGGGA-------VRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQA 194
A+ R + DA GGG PGG R+GARR L L+ S
Sbjct: 139 ASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGS--- 195
Query: 195 RWRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAA 228
RRC G SG P R+ + GAA
Sbjct: 196 ---SRRCQGLGSSWGGSGTPPPPRALWNRHGGAA 226
>gi|7706457 A-kinase anchor protein 11 [Homo sapiens]
Length = 1901
Score = 30.4 bits (67), Expect = 1.8
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 136 WHLSLQAAQARAEQNRGDALSGGGAVRVPGGSGRRRSGARRLRSLCHSSPSLQVSSPQAR 195
+H+S A QA+A + D+ S G + +V + R A LR++C PS Q
Sbjct: 792 YHISSTACQAKAHLSSDDSNSNGDSAQVHIATKNREEKAACLRNIC--LPSEHNPGNQND 849
Query: 196 WRQRRCSVQGEKLQRSGRGPSCRSSSSTSAGAATYTV 232
++ ++ +Q S + P+ + S + A +T+
Sbjct: 850 FKPTNDDIE---MQSSSKLPNDPAIISNFSAAVVHTI 883
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,185,490
Number of Sequences: 37866
Number of extensions: 668022
Number of successful extensions: 2403
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 146
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.