Guide to the Human Genome
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Name: LOC728361 Sequence: fasta or formatted (246aa) NCBI GI: 239757248
Description:

PREDICTED: similar to OVO homolog-like 1

Not currently referenced in the text

Other entries for this name:
alt prot {185aa} PREDICTED: similar to OVO homolog-like 1
alt prot {234aa} PREDICTED: similar to OVO homolog-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         19           2
 C cysteine            4.9         12           2
 D aspartate           3.7          9           1
 E glutamate           3.7          9           1
 F phenylalanine       3.3          8           1
 G glycine             8.1         20           2
 H histidine           5.3         13           1
 I isoleucine          2.0          5           1
 K lysine              3.3          8           1
 L leucine             9.3         23           1
 M methionine          1.6          4           1
 N asparagine          0.8          2           1
 P proline             8.9         22           2
 Q glutamine           5.3         13           2
 R arginine           10.6         26           2
 S serine              9.3         23           3
 T threonine           5.3         13           1
 V valine              3.7          9           1
 W tryptophan          1.6          4           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to OVO homolog-like 1 
LOC728361             0.892   PREDICTED: similar to OVO homolog-like 1 
LOC728361             0.754   PREDICTED: similar to OVO homolog-like 1 
OVOL1                 0.282   OVO-like 1 binding protein 
OVOL2                 0.280   zinc finger protein 339 
ZNF562                0.116   zinc finger protein 562 isoform b 
ZNF562                0.116   zinc finger protein 562 isoform a 
ZNF562                0.116   zinc finger protein 562 isoform a 
MYNN                  0.114   myoneurin 
ZNF749                0.114   zinc finger protein 749 
ZNF594                0.112   zinc finger protein 594 
ZNF623                0.108   zinc finger protein 623 isoform 1 
ZSCAN10               0.108   zinc finger and SCAN domain containing 10 
ZNF623                0.108   zinc finger protein 623 isoform 2 
ZNF121                0.106   zinc finger protein 121 
ZNF257                0.106   zinc finger protein 257 
ZNF429                0.104   zinc finger protein 429 
ZNF577                0.104   zinc finger protein 577 isoform b 
ZNF577                0.104   zinc finger protein 577 isoform a 
ZNF680                0.104   zinc finger protein 680 isoform 1 
ZNF716                0.104   PREDICTED: zinc finger protein 716 
ZNF716                0.104   PREDICTED: zinc finger protein 716 
ZNF716                0.104   PREDICTED: zinc finger protein 716 
ZNF716                0.104   PREDICTED: zinc finger protein 716 
LOC344065             0.104   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.104   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.104   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF678                0.104   zinc finger protein 678 
ZNF211                0.104   zinc finger protein 211 isoform 2 
ZNF211                0.104   zinc finger protein 211 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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